Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:57579470-60469511

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188 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm45193 6 57485121 to 57626030 140909 + unclassified non-coding RNA gene predicted gene 45193
Tssr56691 6 57580971 to 57580985 14 + TSS region transcription start site region 56691
Tssr56692 6 57580994 to 57581015 21 + TSS region transcription start site region 56692
Herc6 6 57581000 to 57664632 83632 + protein coding gene hect domain and RLD 6
Tssr56693 6 57581060 to 57581115 55 + TSS region transcription start site region 56693
Tssr56694 6 57581125 to 57581138 13 + TSS region transcription start site region 56694
Tssr56695 6 57581308 to 57581316 8 + TSS region transcription start site region 56695
Tssr56696 6 57581540 to 57581556 16 + TSS region transcription start site region 56696
Tssr56697 6 57581581 to 57581593 12 + TSS region transcription start site region 56697
Tssr56698 6 57581622 to 57581636 14 + TSS region transcription start site region 56698
Tssr56699 6 57581702 to 57581728 26 + TSS region transcription start site region 56699
Tssr56700 6 57581780 to 57581794 14 + TSS region transcription start site region 56700
Tssr56701 6 57582594 to 57582608 14 + TSS region transcription start site region 56701
Tssr56702 6 57582624 to 57582635 11 + TSS region transcription start site region 56702
Tssr56703 6 57582654 to 57582665 11 + TSS region transcription start site region 56703
Tssr56704 6 57582702 to 57582718 16 + TSS region transcription start site region 56704
Tssr56705 6 57582775 to 57582790 15 + TSS region transcription start site region 56705
Tssr56706 6 57582801 to 57582826 25 + TSS region transcription start site region 56706
Tssr56707 6 57582833 to 57582852 19 + TSS region transcription start site region 56707
Tssr56708 6 57582854 to 57582863 9 + TSS region transcription start site region 56708
Tssr56709 6 57598604 to 57598617 13 + TSS region transcription start site region 56709
Tssr56710 6 57602838 to 57602857 19 + TSS region transcription start site region 56710
Tssr56711 6 57602867 to 57602879 12 + TSS region transcription start site region 56711
Tssr56712 6 57604450 to 57604455 5 + TSS region transcription start site region 56712
Tssr56713 6 57605403 to 57605416 13 + TSS region transcription start site region 56713
Tssr56714 6 57605703 to 57605714 11 + TSS region transcription start site region 56714
Tssr56715 6 57606116 to 57606124 8 + TSS region transcription start site region 56715
Tssr56716 6 57606878 to 57606896 18 + TSS region transcription start site region 56716
Tssr56717 6 57608113 to 57608156 43 + TSS region transcription start site region 56717
Tssr56718 6 57608915 to 57608936 21 + TSS region transcription start site region 56718
Tssr56719 6 57609802 to 57609826 24 + TSS region transcription start site region 56719
Gm19244 6 57617025 to 57617277 252 - pseudogene predicted gene, 19244
Tssr56720 6 57636623 to 57636631 8 + TSS region transcription start site region 56720
Tssr56721 6 57640495 to 57640498 3 + TSS region transcription start site region 56721
Tssr56722 6 57654423 to 57654466 43 + TSS region transcription start site region 56722
Tssr56723 6 57663000 to 57663025 25 + TSS region transcription start site region 56723
Tssr56724 6 57663257 to 57663273 16 + TSS region transcription start site region 56724
Tssr56725 6 57667321 to 57667340 19 + TSS region transcription start site region 56725
Gm37397 6 57684739 to 57687580 2841 - unclassified gene predicted gene, 37397
D6Mit317 6 57685239 to 57685363 124 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 317
Pyurf 6 57686576 to 57692078 5502 - protein coding gene Pigy upstream reading frame
Gm26712 6 57689433 to 57689649 216 - pseudogene predicted gene, 26712
Cpgi17485 6 57691649 to 57692286 637 CpG island CpG island 17485
Tssr61162 6 57692007 to 57692084 77 - TSS region transcription start site region 61162
Tssr56726 6 57702472 to 57702523 51 + TSS region transcription start site region 56726
Lancl2 6 57702540 to 57739439 36899 + protein coding gene LanC (bacterial lantibiotic synthetase component C)-like 2
Tssr56727 6 57702546 to 57702558 12 + TSS region transcription start site region 56727
Cpgi17486 6 57702565 to 57703580 1015 CpG island CpG island 17486
Tssr56728 6 57702647 to 57702658 11 + TSS region transcription start site region 56728
Tssr56729 6 57702914 to 57702925 11 + TSS region transcription start site region 56729
Tssr56730 6 57702927 to 57702940 13 + TSS region transcription start site region 56730
Tssr56731 6 57703060 to 57703093 33 + TSS region transcription start site region 56731
Tssr56732 6 57703378 to 57703445 67 + TSS region transcription start site region 56732
Tssr61163 6 57703856 to 57703903 47 - TSS region transcription start site region 61163
Tssr56733 6 57707416 to 57707446 30 + TSS region transcription start site region 56733
Vopp1 6 57752264 to 57825374 73110 - protein coding gene vesicular, overexpressed in cancer, prosurvival protein 1
Tssr56734 6 57823712 to 57823723 11 + TSS region transcription start site region 56734
Cpgi17487 6 57824428 to 57825711 1283 CpG island CpG island 17487
Tssr56735 6 57824485 to 57824498 13 + TSS region transcription start site region 56735
Tssr56736 6 57824537 to 57824557 20 + TSS region transcription start site region 56736
Tssr61164 6 57824633 to 57824663 30 - TSS region transcription start site region 61164
Tssr56737 6 57824645 to 57824649 4 + TSS region transcription start site region 56737
Tssr61165 6 57825055 to 57825141 86 - TSS region transcription start site region 61165
Tssr61166 6 57825144 to 57825166 22 - TSS region transcription start site region 61166
Tssr61167 6 57825282 to 57825305 23 - TSS region transcription start site region 61167
Tssr61168 6 57839915 to 57839922 7 - TSS region transcription start site region 61168
Vmn1r21 6 57843564 to 57844457 893 - protein coding gene vomeronasal 1 receptor 21
Gm44114 6 57845586 to 57848312 2726 + unclassified gene predicted gene, 44114
Gm25726 6 57859820 to 57859948 128 - snoRNA gene predicted gene, 25726
Vmn1r-ps12 6 57872416 to 57872916 500 - pseudogene vomeronasal 1 receptor, pseudogene 12
D6Mit385 6 57874076 to 57874158 82 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 385
Vmn1r22 6 57900082 to 57900990 908 - protein coding gene vomeronasal 1 receptor 22
Vmn1r23 6 57925883 to 57926791 908 - protein coding gene vomeronasal 1 receptor 23
Gm20660 6 57949683 to 57949971 288 - pseudogene predicted gene 20660
Gm3382 6 57950075 to 57950469 394 + pseudogene predicted gene 3382
Vmn1r24 6 57955641 to 57956531 890 - protein coding gene vomeronasal 1 receptor 24
Vmn1r25 6 57978394 to 57979302 908 - protein coding gene vomeronasal 1 receptor 25
Vmn1r-ps13 6 57993448 to 57993581 133 - pseudogene vomeronasal 1 receptor, pseudogene 13
Vmn1r26 6 58008183 to 58009202 1019 - protein coding gene vomeronasal 1 receptor 26
Rps15-ps2 6 58017477 to 58017757 280 + pseudogene ribosomal protein S15, pseudogene 2
Tssr56738 6 58017481 to 58017483 2 + TSS region transcription start site region 56738
Vmn1r-ps14 6 58048939 to 58049847 908 - pseudogene vomeronasal 1 receptor, pseudogene 14
Vmn1r-ps15 6 58077173 to 58078082 909 - pseudogene vomeronasal 1 receptor, pseudogene 15
Gm6695 6 58091076 to 58092247 1171 + pseudogene predicted gene 6695
Vmn1r-ps16 6 58108063 to 58108167 104 - pseudogene vomeronasal 1 receptor, pseudogene 16
Vmn1r-ps17 6 58115737 to 58116630 893 - pseudogene vomeronasal 1 receptor, pseudogene 17
Gm20718 6 58135885 to 58136143 258 + pseudogene predicted gene 20718
Gm43994 6 58192321 to 58194765 2444 + lincRNA gene predicted gene, 43994
Vmn1r-ps18 6 58206047 to 58206997 950 + pseudogene vomeronasal 1 receptor, pseudogene 18
Vmn1r27 6 58215106 to 58216017 911 - protein coding gene vomeronasal 1 receptor 27
Vmn1r-ps19 6 58256643 to 58257547 904 - pseudogene vomeronasal 1 receptor, pseudogene 19
Vmn1r28 6 58262294 to 58266082 3788 + protein coding gene vomeronasal 1 receptor 28
Vmn1r29 6 58307297 to 58308208 911 + protein coding gene vomeronasal 1 receptor 29
Gm20674 6 58394054 to 58394422 368 + pseudogene predicted gene 20674
Vmn1r-ps20 6 58406413 to 58407327 914 - pseudogene vomeronasal 1 receptor, pseudogene 20
Vmn1r30 6 58434848 to 58443624 8776 - protein coding gene vomeronasal 1 receptor 30
Gm44016 6 58438695 to 58438858 163 - pseudogene predicted gene, 44016
Vmn1r-ps21 6 58455097 to 58455993 896 - pseudogene vomeronasal 1 receptor, pseudogene 21
Gm20673 6 58461107 to 58461536 429 + pseudogene predicted gene 20673
Vmn1r31 6 58471967 to 58472878 911 - protein coding gene vomeronasal 1 receptor 31
Vmn1r-ps22 6 58494348 to 58495247 899 - pseudogene vomeronasal 1 receptor, pseudogene 22
Gm35077 6 58497956 to 58533690 35734 - lincRNA gene predicted gene, 35077
Vmn1r-ps23 6 58504483 to 58504695 212 - pseudogene vomeronasal 1 receptor, pseudogene 23
Gm20672 6 58512271 to 58512531 260 + pseudogene predicted gene 20672
Tssr61169 6 58533613 to 58533640 27 - TSS region transcription start site region 61169
Gm45943 6 58533975 to 58584255 50280 - protein coding gene predicted gene, 45943
Abcg2 6 58584491 to 58692451 107960 + protein coding gene ATP binding cassette subfamily G member 2 (Junior blood group)
Tssr56739 6 58596584 to 58596615 31 + TSS region transcription start site region 56739
Tssr56740 6 58596698 to 58596710 12 + TSS region transcription start site region 56740
V25Dq4 6 58600000 to 58600000 0 QTL vitamin D inactive form serum level QTL 4
Cpgi17488 6 58640273 to 58640909 636 CpG island CpG island 17488
Tssr56741 6 58640536 to 58640596 60 + TSS region transcription start site region 56741
Tssr56742 6 58640598 to 58640610 12 + TSS region transcription start site region 56742
Tssr56743 6 58643996 to 58644007 11 + TSS region transcription start site region 56743
Tssr56744 6 58644010 to 58644056 46 + TSS region transcription start site region 56744
Tssr56745 6 58644212 to 58644217 5 + TSS region transcription start site region 56745
2310061B05Rik 6 58679710 to 58680634 924 unclassified gene RIKEN cDNA 2310061B05 gene
Gm38822 6 58758909 to 58813748 54839 - lncRNA gene predicted gene, 38822
Tssr61170 6 58780511 to 58780526 15 - TSS region transcription start site region 61170
Tssr61171 6 58780535 to 58780567 32 - TSS region transcription start site region 61171
Gm43899 6 58781692 to 58781937 245 - pseudogene predicted gene, 43899
Cpgi17489 6 58831015 to 58832063 1048 CpG island CpG island 17489
Tssr56746 6 58831456 to 58831504 48 + TSS region transcription start site region 56746
Herc3 6 58831465 to 58920398 88933 + protein coding gene hect domain and RLD 3
Tssr56747 6 58831513 to 58831529 16 + TSS region transcription start site region 56747
Tssr56748 6 58831551 to 58831566 15 + TSS region transcription start site region 56748
Tssr56749 6 58831880 to 58831898 18 + TSS region transcription start site region 56749
Tssr56750 6 58833689 to 58833734 45 + TSS region transcription start site region 56750
Tssr56751 6 58862879 to 58862910 31 + TSS region transcription start site region 56751
Tssr56752 6 58862964 to 58862976 12 + TSS region transcription start site region 56752
Nap1l5 6 58905233 to 58907076 1843 - protein coding gene nucleosome assembly protein 1-like 5
Tssr61172 6 58906250 to 58906261 11 - TSS region transcription start site region 61172
Cpgi17490 6 58906502 to 58907297 795 CpG island CpG island 17490
Tssr56753 6 58906544 to 58906579 35 + TSS region transcription start site region 56753
Tssr61173 6 58907025 to 58907042 17 - TSS region transcription start site region 61173
Tssr61174 6 58907053 to 58907098 45 - TSS region transcription start site region 61174
Tssr61175 6 58907101 to 58907119 18 - TSS region transcription start site region 61175
Tssr61176 6 58907120 to 58907131 11 - TSS region transcription start site region 61176
Tssr56754 6 58909175 to 58909179 4 + TSS region transcription start site region 56754
Fam13a 6 58933536 to 59024502 90966 - protein coding gene family with sequence similarity 13, member A
Gm45060 6 58964874 to 58972234 7360 + antisense lncRNA gene predicted gene 45060
8430415O14Rik 6 58965215 to 58992308 27093 + lncRNA gene RIKEN cDNA 8430415O14 gene
Tssr61177 6 58965499 to 58965523 24 - TSS region transcription start site region 61177
BB365896 6 58965655 to 59002083 36428 + antisense lncRNA gene expressed sequence BB365896
Gm45061 6 58973197 to 58975291 2094 + unclassified gene predicted gene 45061
Tssr61178 6 59016833 to 59016878 45 - TSS region transcription start site region 61178
Tssr61179 6 59016942 to 59016954 12 - TSS region transcription start site region 61179
Tssr61180 6 59017070 to 59017108 38 - TSS region transcription start site region 61180
Cpgi17491 6 59024133 to 59024623 490 CpG island CpG island 17491
Tssr61181 6 59024429 to 59024450 21 - TSS region transcription start site region 61181
Tssr61182 6 59024453 to 59024465 12 - TSS region transcription start site region 61182
Tssr61183 6 59024470 to 59024511 41 - TSS region transcription start site region 61183
Gm19165 6 59036889 to 59039322 2433 + pseudogene predicted gene, 19165
Gm22367 6 59099253 to 59099384 131 + snoRNA gene predicted gene, 22367
Lmr4 6 59116373 to 59116515 142 QTL leishmaniasis resistance 4
Lmr4c 6 59116373 to 59116515 142 QTL leishmaniasis resistance 4c
Lmr4a 6 59116373 to 59116515 142 QTL leishmaniasis resistance 4a
D6Mit122 6 59116373 to 59116515 142 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 122
Mts4 6 59116373 to 59116515 142 QTL mammary tumor susceptibility 4
Gm43905 6 59193050 to 59193253 203 - pseudogene predicted gene, 43905
Cpgi17492 6 59208688 to 59209511 823 CpG island CpG island 17492
Tssr56755 6 59208861 to 59208878 17 + TSS region transcription start site region 56755
Tigd2 6 59208870 to 59212033 3163 + protein coding gene tigger transposable element derived 2
Tssr56756 6 59208888 to 59208958 70 + TSS region transcription start site region 56756
Tssr56757 6 59209064 to 59209075 11 + TSS region transcription start site region 56757
Tssr56758 6 59233462 to 59233486 24 + TSS region transcription start site region 56758
Gprin3 6 59347226 to 59426294 79068 - protein coding gene GPRIN family member 3
Tssr56759 6 59408759 to 59408762 3 + TSS region transcription start site region 56759
Cpgi17493 6 59426021 to 59426577 556 CpG island CpG island 17493
Tssr61184 6 59426279 to 59426345 66 - TSS region transcription start site region 61184
Gm35195 6 59698167 to 59705903 7736 + lncRNA gene predicted gene, 35195
Gm22622 6 59705746 to 59705874 128 - snoRNA gene predicted gene, 22622
Tssr56760 6 59710716 to 59710736 20 + TSS region transcription start site region 56760
D6Mit120 6 59878547 to 59878694 147 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 120
Gm18012 6 59942351 to 59943308 957 + pseudogene predicted gene, 18012
Gm22723 6 60071058 to 60071186 128 - snoRNA gene predicted gene, 22723
Gm5570 6 60078019 to 60150045 72026 + lincRNA gene predicted gene 5570
Tssr56761 6 60177654 to 60177678 24 + TSS region transcription start site region 56761
Gm46985 6 60179142 to 60181776 2634 + protein coding gene predicted gene, 46985
n-R5s162 6 60250792 to 60250910 118 + rRNA gene nuclear encoded rRNA 5S 162
A530053G22Rik 6 60279043 to 60403707 124664 - lncRNA gene RIKEN cDNA A530053G22 gene
Gm35335 6 60339805 to 60374268 34463 + lncRNA gene predicted gene, 35335
D6Slab2 6 60393081 to 60393287 206 DNA segment DNA segment, Chr 6, Schoepfer Lab 2
Tssr61185 6 60403667 to 60403681 14 - TSS region transcription start site region 61185
Tssr61186 6 60403692 to 60403712 20 - TSS region transcription start site region 61186
Gm38823 6 60411196 to 60449685 38489 + lncRNA gene predicted gene, 38823
Gm44389 6 60461933 to 60462114 181 - pseudogene predicted gene, 44389
Tssr61187 6 60462209 to 60462212 3 - TSS region transcription start site region 61187