Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:57427321-58959765

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154 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vmn1r20 6 57431691 to 57432602 911 + protein coding gene vomeronasal 1 receptor 20
Vmn1r-ps11 6 57447356 to 57448208 852 - pseudogene vomeronasal 1 receptor, pseudogene 11
4930533I22Rik 6 57476697 to 57497671 20974 + antisense lncRNA gene RIKEN cDNA 4930533I22 gene
Tssr1861 6 57485114 to 57485125 11 + TSS region transcription start site region 1861
Gm45193 6 57485121 to 57626030 140909 + unclassified non-coding RNA gene predicted gene 45193
Ppm1k 6 57506502 to 57535468 28966 - protein coding gene protein phosphatase 1K (PP2C domain containing)
Cpgi17483 6 57534755 to 57535260 505 CpG island CpG island 17483
Tssr61156 6 57535368 to 57535395 27 - TSS region transcription start site region 61156
Tssr61157 6 57535410 to 57535421 11 - TSS region transcription start site region 61157
Tssr61158 6 57535422 to 57535447 25 - TSS region transcription start site region 61158
Tssr61159 6 57535477 to 57535497 20 - TSS region transcription start site region 61159
Tssr61160 6 57535499 to 57535513 14 - TSS region transcription start site region 61160
Cpgi17484 6 57535531 to 57535867 336 CpG island CpG island 17484
Tssr61161 6 57541088 to 57541092 4 - TSS region transcription start site region 61161
Gm27896 6 57565793 to 57566109 316 + unclassified non-coding RNA gene predicted gene, 27896
Tssr56691 6 57580971 to 57580985 14 + TSS region transcription start site region 56691
Tssr56692 6 57580994 to 57581015 21 + TSS region transcription start site region 56692
Herc6 6 57581000 to 57664632 83632 + protein coding gene hect domain and RLD 6
Tssr56693 6 57581060 to 57581115 55 + TSS region transcription start site region 56693
Tssr56694 6 57581125 to 57581138 13 + TSS region transcription start site region 56694
Tssr56695 6 57581308 to 57581316 8 + TSS region transcription start site region 56695
Tssr56696 6 57581540 to 57581556 16 + TSS region transcription start site region 56696
Tssr56697 6 57581581 to 57581593 12 + TSS region transcription start site region 56697
Tssr56698 6 57581622 to 57581636 14 + TSS region transcription start site region 56698
Tssr56699 6 57581702 to 57581728 26 + TSS region transcription start site region 56699
Tssr56700 6 57581780 to 57581794 14 + TSS region transcription start site region 56700
Tssr56701 6 57582594 to 57582608 14 + TSS region transcription start site region 56701
Tssr56702 6 57582624 to 57582635 11 + TSS region transcription start site region 56702
Tssr56703 6 57582654 to 57582665 11 + TSS region transcription start site region 56703
Tssr56704 6 57582702 to 57582718 16 + TSS region transcription start site region 56704
Tssr56705 6 57582775 to 57582790 15 + TSS region transcription start site region 56705
Tssr56706 6 57582801 to 57582826 25 + TSS region transcription start site region 56706
Tssr56707 6 57582833 to 57582852 19 + TSS region transcription start site region 56707
Tssr56708 6 57582854 to 57582863 9 + TSS region transcription start site region 56708
Tssr56709 6 57598604 to 57598617 13 + TSS region transcription start site region 56709
Tssr56710 6 57602838 to 57602857 19 + TSS region transcription start site region 56710
Tssr56711 6 57602867 to 57602879 12 + TSS region transcription start site region 56711
Tssr56712 6 57604450 to 57604455 5 + TSS region transcription start site region 56712
Tssr56713 6 57605403 to 57605416 13 + TSS region transcription start site region 56713
Tssr56714 6 57605703 to 57605714 11 + TSS region transcription start site region 56714
Tssr56715 6 57606116 to 57606124 8 + TSS region transcription start site region 56715
Tssr56716 6 57606878 to 57606896 18 + TSS region transcription start site region 56716
Tssr56717 6 57608113 to 57608156 43 + TSS region transcription start site region 56717
Tssr56718 6 57608915 to 57608936 21 + TSS region transcription start site region 56718
Tssr56719 6 57609802 to 57609826 24 + TSS region transcription start site region 56719
Gm19244 6 57617025 to 57617277 252 - pseudogene predicted gene, 19244
Tssr56720 6 57636623 to 57636631 8 + TSS region transcription start site region 56720
Tssr56721 6 57640495 to 57640498 3 + TSS region transcription start site region 56721
Tssr56722 6 57654423 to 57654466 43 + TSS region transcription start site region 56722
Tssr56723 6 57663000 to 57663025 25 + TSS region transcription start site region 56723
Tssr56724 6 57663257 to 57663273 16 + TSS region transcription start site region 56724
Tssr56725 6 57667321 to 57667340 19 + TSS region transcription start site region 56725
Gm37397 6 57684739 to 57687580 2841 - unclassified gene predicted gene, 37397
D6Mit317 6 57685239 to 57685363 124 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 317
Pyurf 6 57686576 to 57692078 5502 - protein coding gene Pigy upstream reading frame
Gm26712 6 57689433 to 57689649 216 - pseudogene predicted gene, 26712
Cpgi17485 6 57691649 to 57692286 637 CpG island CpG island 17485
Tssr61162 6 57692007 to 57692084 77 - TSS region transcription start site region 61162
Tssr56726 6 57702472 to 57702523 51 + TSS region transcription start site region 56726
Lancl2 6 57702540 to 57739439 36899 + protein coding gene LanC (bacterial lantibiotic synthetase component C)-like 2
Tssr56727 6 57702546 to 57702558 12 + TSS region transcription start site region 56727
Cpgi17486 6 57702565 to 57703580 1015 CpG island CpG island 17486
Tssr56728 6 57702647 to 57702658 11 + TSS region transcription start site region 56728
Tssr56729 6 57702914 to 57702925 11 + TSS region transcription start site region 56729
Tssr56730 6 57702927 to 57702940 13 + TSS region transcription start site region 56730
Tssr56731 6 57703060 to 57703093 33 + TSS region transcription start site region 56731
Tssr56732 6 57703378 to 57703445 67 + TSS region transcription start site region 56732
Tssr61163 6 57703856 to 57703903 47 - TSS region transcription start site region 61163
Tssr56733 6 57707416 to 57707446 30 + TSS region transcription start site region 56733
Vopp1 6 57752264 to 57825374 73110 - protein coding gene vesicular, overexpressed in cancer, prosurvival protein 1
Tssr56734 6 57823712 to 57823723 11 + TSS region transcription start site region 56734
Cpgi17487 6 57824428 to 57825711 1283 CpG island CpG island 17487
Tssr56735 6 57824485 to 57824498 13 + TSS region transcription start site region 56735
Tssr56736 6 57824537 to 57824557 20 + TSS region transcription start site region 56736
Tssr61164 6 57824633 to 57824663 30 - TSS region transcription start site region 61164
Tssr56737 6 57824645 to 57824649 4 + TSS region transcription start site region 56737
Tssr61165 6 57825055 to 57825141 86 - TSS region transcription start site region 61165
Tssr61166 6 57825144 to 57825166 22 - TSS region transcription start site region 61166
Tssr61167 6 57825282 to 57825305 23 - TSS region transcription start site region 61167
Tssr61168 6 57839915 to 57839922 7 - TSS region transcription start site region 61168
Vmn1r21 6 57843564 to 57844457 893 - protein coding gene vomeronasal 1 receptor 21
Gm44114 6 57845586 to 57848312 2726 + unclassified gene predicted gene, 44114
Gm25726 6 57859820 to 57859948 128 - snoRNA gene predicted gene, 25726
Vmn1r-ps12 6 57872416 to 57872916 500 - pseudogene vomeronasal 1 receptor, pseudogene 12
D6Mit385 6 57874076 to 57874158 82 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 385
Vmn1r22 6 57900082 to 57900990 908 - protein coding gene vomeronasal 1 receptor 22
Vmn1r23 6 57925883 to 57926791 908 - protein coding gene vomeronasal 1 receptor 23
Gm20660 6 57949683 to 57949971 288 - pseudogene predicted gene 20660
Gm3382 6 57950075 to 57950469 394 + pseudogene predicted gene 3382
Vmn1r24 6 57955641 to 57956531 890 - protein coding gene vomeronasal 1 receptor 24
Vmn1r25 6 57978394 to 57979302 908 - protein coding gene vomeronasal 1 receptor 25
Vmn1r-ps13 6 57993448 to 57993581 133 - pseudogene vomeronasal 1 receptor, pseudogene 13
Vmn1r26 6 58008183 to 58009202 1019 - protein coding gene vomeronasal 1 receptor 26
Rps15-ps2 6 58017477 to 58017757 280 + pseudogene ribosomal protein S15, pseudogene 2
Tssr56738 6 58017481 to 58017483 2 + TSS region transcription start site region 56738
Vmn1r-ps14 6 58048939 to 58049847 908 - pseudogene vomeronasal 1 receptor, pseudogene 14
Vmn1r-ps15 6 58077173 to 58078082 909 - pseudogene vomeronasal 1 receptor, pseudogene 15
Gm6695 6 58091076 to 58092247 1171 + pseudogene predicted gene 6695
Vmn1r-ps16 6 58108063 to 58108167 104 - pseudogene vomeronasal 1 receptor, pseudogene 16
Vmn1r-ps17 6 58115737 to 58116630 893 - pseudogene vomeronasal 1 receptor, pseudogene 17
Gm20718 6 58135885 to 58136143 258 + pseudogene predicted gene 20718
Gm43994 6 58192321 to 58194765 2444 + lincRNA gene predicted gene, 43994
Vmn1r-ps18 6 58206047 to 58206997 950 + pseudogene vomeronasal 1 receptor, pseudogene 18
Vmn1r27 6 58215106 to 58216017 911 - protein coding gene vomeronasal 1 receptor 27
Vmn1r-ps19 6 58256643 to 58257547 904 - pseudogene vomeronasal 1 receptor, pseudogene 19
Vmn1r28 6 58262294 to 58266082 3788 + protein coding gene vomeronasal 1 receptor 28
Vmn1r29 6 58307297 to 58308208 911 + protein coding gene vomeronasal 1 receptor 29
Gm20674 6 58394054 to 58394422 368 + pseudogene predicted gene 20674
Vmn1r-ps20 6 58406413 to 58407327 914 - pseudogene vomeronasal 1 receptor, pseudogene 20
Vmn1r30 6 58434848 to 58443624 8776 - protein coding gene vomeronasal 1 receptor 30
Gm44016 6 58438695 to 58438858 163 - pseudogene predicted gene, 44016
Vmn1r-ps21 6 58455097 to 58455993 896 - pseudogene vomeronasal 1 receptor, pseudogene 21
Gm20673 6 58461107 to 58461536 429 + pseudogene predicted gene 20673
Vmn1r31 6 58471967 to 58472878 911 - protein coding gene vomeronasal 1 receptor 31
Vmn1r-ps22 6 58494348 to 58495247 899 - pseudogene vomeronasal 1 receptor, pseudogene 22
Gm35077 6 58497956 to 58533690 35734 - lincRNA gene predicted gene, 35077
Vmn1r-ps23 6 58504483 to 58504695 212 - pseudogene vomeronasal 1 receptor, pseudogene 23
Gm20672 6 58512271 to 58512531 260 + pseudogene predicted gene 20672
Tssr61169 6 58533613 to 58533640 27 - TSS region transcription start site region 61169
Gm45943 6 58533975 to 58584255 50280 - protein coding gene predicted gene, 45943
Abcg2 6 58584491 to 58692451 107960 + protein coding gene ATP binding cassette subfamily G member 2 (Junior blood group)
Tssr56739 6 58596584 to 58596615 31 + TSS region transcription start site region 56739
Tssr56740 6 58596698 to 58596710 12 + TSS region transcription start site region 56740
V25Dq4 6 58600000 to 58600000 0 QTL vitamin D inactive form serum level QTL 4
Cpgi17488 6 58640273 to 58640909 636 CpG island CpG island 17488
Tssr56741 6 58640536 to 58640596 60 + TSS region transcription start site region 56741
Tssr56742 6 58640598 to 58640610 12 + TSS region transcription start site region 56742
Tssr56743 6 58643996 to 58644007 11 + TSS region transcription start site region 56743
Tssr56744 6 58644010 to 58644056 46 + TSS region transcription start site region 56744
Tssr56745 6 58644212 to 58644217 5 + TSS region transcription start site region 56745
2310061B05Rik 6 58679710 to 58680634 924 unclassified gene RIKEN cDNA 2310061B05 gene
Gm38822 6 58758909 to 58813748 54839 - lncRNA gene predicted gene, 38822
Tssr61170 6 58780511 to 58780526 15 - TSS region transcription start site region 61170
Tssr61171 6 58780535 to 58780567 32 - TSS region transcription start site region 61171
Gm43899 6 58781692 to 58781937 245 - pseudogene predicted gene, 43899
Cpgi17489 6 58831015 to 58832063 1048 CpG island CpG island 17489
Tssr56746 6 58831456 to 58831504 48 + TSS region transcription start site region 56746
Herc3 6 58831465 to 58920398 88933 + protein coding gene hect domain and RLD 3
Tssr56747 6 58831513 to 58831529 16 + TSS region transcription start site region 56747
Tssr56748 6 58831551 to 58831566 15 + TSS region transcription start site region 56748
Tssr56749 6 58831880 to 58831898 18 + TSS region transcription start site region 56749
Tssr56750 6 58833689 to 58833734 45 + TSS region transcription start site region 56750
Tssr56751 6 58862879 to 58862910 31 + TSS region transcription start site region 56751
Tssr56752 6 58862964 to 58862976 12 + TSS region transcription start site region 56752
Nap1l5 6 58905233 to 58907076 1843 - protein coding gene nucleosome assembly protein 1-like 5
Tssr61172 6 58906250 to 58906261 11 - TSS region transcription start site region 61172
Cpgi17490 6 58906502 to 58907297 795 CpG island CpG island 17490
Tssr56753 6 58906544 to 58906579 35 + TSS region transcription start site region 56753
Tssr61173 6 58907025 to 58907042 17 - TSS region transcription start site region 61173
Tssr61174 6 58907053 to 58907098 45 - TSS region transcription start site region 61174
Tssr61175 6 58907101 to 58907119 18 - TSS region transcription start site region 61175
Tssr61176 6 58907120 to 58907131 11 - TSS region transcription start site region 61176
Tssr56754 6 58909175 to 58909179 4 + TSS region transcription start site region 56754
Fam13a 6 58933536 to 59024502 90966 - protein coding gene family with sequence similarity 13, member A