Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:56793507-57584344

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Kbtbd2 6 56777524 to 56797813 20289 - protein coding gene kelch repeat and BTB (POZ) domain containing 2
Tssr61141 6 56796721 to 56796751 30 - TSS region transcription start site region 61141
Cpgi17480 6 56796970 to 56798289 1319 CpG island CpG island 17480
Tssr61142 6 56797495 to 56797553 58 - TSS region transcription start site region 61142
Gm10209 6 56797591 to 56799197 1606 + protein coding gene predicted gene 10209
Tssr61143 6 56797637 to 56797757 120 - TSS region transcription start site region 61143
Tssr61144 6 56797761 to 56797786 25 - TSS region transcription start site region 61144
Tssr61145 6 56800230 to 56800236 6 - TSS region transcription start site region 61145
Tssr61146 6 56804314 to 56804315 1 - TSS region transcription start site region 61146
Cpgi17481 6 56831866 to 56832659 793 CpG island CpG island 17481
Fkbp9 6 56832059 to 56879358 47299 + protein coding gene FK506 binding protein 9
Tssr56685 6 56832099 to 56832160 61 + TSS region transcription start site region 56685
Tssr56686 6 56832163 to 56832175 12 + TSS region transcription start site region 56686
Tssr56687 6 56832898 to 56832901 3 + TSS region transcription start site region 56687
Tssr61147 6 56837347 to 56837362 15 - TSS region transcription start site region 61147
Tssr56688 6 56857731 to 56857740 9 + TSS region transcription start site region 56688
Tssr56689 6 56868841 to 56868854 13 + TSS region transcription start site region 56689
Nt5c3 6 56882400 to 56923932 41532 - protein coding gene 5'-nucleotidase, cytosolic III
Tssr61148 6 56888697 to 56888713 16 - TSS region transcription start site region 61148
Tssr61149 6 56901821 to 56901838 17 - TSS region transcription start site region 61149
Tssr61150 6 56901870 to 56901891 21 - TSS region transcription start site region 61150
Tssr61151 6 56901916 to 56901919 3 - TSS region transcription start site region 61151
Tssr1860 6 56902099 to 56902144 45 - TSS region transcription start site region 1860
Gm3793 6 56905911 to 56906582 671 - unclassified gene predicted gene 3793
Cpgi17482 6 56923419 to 56924343 924 CpG island CpG island 17482
Tssr61152 6 56923486 to 56923495 9 - TSS region transcription start site region 61152
Tssr61153 6 56923804 to 56923815 11 - TSS region transcription start site region 61153
Tssr61154 6 56923821 to 56923926 105 - TSS region transcription start site region 61154
Tssr61155 6 56923927 to 56923950 23 - TSS region transcription start site region 61155
Vmn1r4 6 56924058 to 56957608 33550 + protein coding gene vomeronasal 1 receptor 4
D6Dcr12 6 56931179 to 56931289 110 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 12
Gm44049 6 56941841 to 56944824 2983 - unclassified gene predicted gene, 44049
Vmn1r5 6 56985342 to 56986289 947 + protein coding gene vomeronasal 1 receptor 5
Vmn1r6 6 57002355 to 57003266 911 + protein coding gene vomeronasal 1 receptor 6
Vmn1r7 6 57024338 to 57025273 935 - protein coding gene vomeronasal 1 receptor 7
Vmn1r8 6 57032341 to 57037125 4784 + protein coding gene vomeronasal 1 receptor 8
Vmn1r9 6 57070895 to 57071945 1050 + protein coding gene vomeronasal 1 receptor 9
Vmn1r10 6 57113425 to 57114360 935 + protein coding gene vomeronasal 1 receptor 10
Vmn1r11 6 57137353 to 57138252 899 + protein coding gene vomeronasal 1 receptor 11
Vmn1r12 6 57158920 to 57159843 923 + protein coding gene vomeronasal 1 receptor 12
Vmn1r-ps8 6 57188507 to 57189344 837 + pseudogene vomeronasal 1 receptor, pseudogene 8
Vmn1r13 6 57200904 to 57210760 9856 + protein coding gene vomeronasal 1 receptor 13
Vmn1r14 6 57226155 to 57234350 8195 + protein coding gene vomeronasal 1 receptor 14
Vmn1r15 6 57258149 to 57259048 899 + protein coding gene vomeronasal 1 receptor 15
Vmn1r-ps9 6 57278022 to 57278379 357 + pseudogene vomeronasal 1 receptor, pseudogene 9
Vmn1r-ps10 6 57312940 to 57313658 718 + pseudogene vomeronasal 1 receptor, pseudogene 10
Vmn1r16 6 57320739 to 57323635 2896 - protein coding gene vomeronasal 1 receptor 16
Vmn1r17 6 57360467 to 57361378 911 - protein coding gene vomeronasal 1 receptor 17
Tssr56690 6 57366112 to 57366141 29 + TSS region transcription start site region 56690
Vmn1r18 6 57389668 to 57390567 899 - protein coding gene vomeronasal 1 receptor 18
Vmn1r19 6 57404464 to 57405390 926 + protein coding gene vomeronasal 1 receptor 19
Vmn1r20 6 57431691 to 57432602 911 + protein coding gene vomeronasal 1 receptor 20
Vmn1r-ps11 6 57447356 to 57448208 852 - pseudogene vomeronasal 1 receptor, pseudogene 11
4930533I22Rik 6 57476697 to 57497671 20974 + antisense lncRNA gene RIKEN cDNA 4930533I22 gene
Tssr1861 6 57485114 to 57485125 11 + TSS region transcription start site region 1861
Gm45193 6 57485121 to 57626030 140909 + unclassified non-coding RNA gene predicted gene 45193
Ppm1k 6 57506502 to 57535468 28966 - protein coding gene protein phosphatase 1K (PP2C domain containing)
Cpgi17483 6 57534755 to 57535260 505 CpG island CpG island 17483
Tssr61156 6 57535368 to 57535395 27 - TSS region transcription start site region 61156
Tssr61157 6 57535410 to 57535421 11 - TSS region transcription start site region 61157
Tssr61158 6 57535422 to 57535447 25 - TSS region transcription start site region 61158
Tssr61159 6 57535477 to 57535497 20 - TSS region transcription start site region 61159
Tssr61160 6 57535499 to 57535513 14 - TSS region transcription start site region 61160
Cpgi17484 6 57535531 to 57535867 336 CpG island CpG island 17484
Tssr61161 6 57541088 to 57541092 4 - TSS region transcription start site region 61161
Gm27896 6 57565793 to 57566109 316 + unclassified non-coding RNA gene predicted gene, 27896
Tssr56691 6 57580971 to 57580985 14 + TSS region transcription start site region 56691
Tssr56692 6 57580994 to 57581015 21 + TSS region transcription start site region 56692
Herc6 6 57581000 to 57664632 83632 + protein coding gene hect domain and RLD 6
Tssr56693 6 57581060 to 57581115 55 + TSS region transcription start site region 56693
Tssr56694 6 57581125 to 57581138 13 + TSS region transcription start site region 56694
Tssr56695 6 57581308 to 57581316 8 + TSS region transcription start site region 56695
Tssr56696 6 57581540 to 57581556 16 + TSS region transcription start site region 56696
Tssr56697 6 57581581 to 57581593 12 + TSS region transcription start site region 56697
Tssr56698 6 57581622 to 57581636 14 + TSS region transcription start site region 56698
Tssr56699 6 57581702 to 57581728 26 + TSS region transcription start site region 56699
Tssr56700 6 57581780 to 57581794 14 + TSS region transcription start site region 56700
Tssr56701 6 57582594 to 57582608 14 + TSS region transcription start site region 56701
Tssr56702 6 57582624 to 57582635 11 + TSS region transcription start site region 56702
Tssr56703 6 57582654 to 57582665 11 + TSS region transcription start site region 56703
Tssr56704 6 57582702 to 57582718 16 + TSS region transcription start site region 56704
Tssr56705 6 57582775 to 57582790 15 + TSS region transcription start site region 56705
Tssr56706 6 57582801 to 57582826 25 + TSS region transcription start site region 56706
Tssr56707 6 57582833 to 57582852 19 + TSS region transcription start site region 56707
Tssr56708 6 57582854 to 57582863 9 + TSS region transcription start site region 56708