Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:56487355-57518266

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pde1c 6 56069804 to 56569103 499299 - protein coding gene phosphodiesterase 1C
Cpgi17476 6 56568424 to 56569086 662 CpG island CpG island 17476
Tssr61134 6 56568921 to 56568932 11 - TSS region transcription start site region 61134
Tssr61135 6 56568942 to 56568995 53 - TSS region transcription start site region 61135
Tssr61136 6 56569108 to 56569122 14 - TSS region transcription start site region 61136
Tssr1858 6 56569151 to 56569181 30 - TSS region transcription start site region 1858
Tssr61137 6 56569183 to 56569203 20 - TSS region transcription start site region 61137
D6Mit241 6 56573699 to 56573817 118 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 241
Gm8239 6 56581203 to 56652487 71284 - lincRNA gene predicted gene 8239
Gm24709 6 56583715 to 56583846 131 - snoRNA gene predicted gene, 24709
Gm22493 6 56600818 to 56600949 131 - snoRNA gene predicted gene, 22493
Cpgi17477 6 56652093 to 56652548 455 CpG island CpG island 17477
Lsm5 6 56701063 to 56704699 3636 - protein coding gene LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated
Cpgi17478 6 56704182 to 56704858 676 CpG island CpG island 17478
Tssr61138 6 56704673 to 56704712 39 - TSS region transcription start site region 61138
4933427C19Rik 6 56714499 to 56715731 1232 unclassified gene RIKEN cDNA 4933427C19 gene
Cpgi17479 6 56714581 to 56715588 1007 CpG island CpG island 17479
Tssr56680 6 56714821 to 56714853 32 + TSS region transcription start site region 56680
Tssr56681 6 56714866 to 56714883 17 + TSS region transcription start site region 56681
Tssr56682 6 56714891 to 56714951 60 + TSS region transcription start site region 56682
Avl9 6 56714905 to 56761912 47007 + protein coding gene AVL9 cell migration associated
Tssr56683 6 56714958 to 56714971 13 + TSS region transcription start site region 56683
Tssr1859 6 56715006 to 56715015 9 + TSS region transcription start site region 1859
Tssr61139 6 56715452 to 56715468 16 - TSS region transcription start site region 61139
Tssr56684 6 56746548 to 56746559 11 + TSS region transcription start site region 56684
3110035G12Rik 6 56775823 to 56777345 1522 unclassified gene RIKEN cDNA 3110035G12 gene
Kbtbd2 6 56777524 to 56797813 20289 - protein coding gene kelch repeat and BTB (POZ) domain containing 2
Tssr61140 6 56784423 to 56784426 3 - TSS region transcription start site region 61140
Tssr61141 6 56796721 to 56796751 30 - TSS region transcription start site region 61141
Cpgi17480 6 56796970 to 56798289 1319 CpG island CpG island 17480
Tssr61142 6 56797495 to 56797553 58 - TSS region transcription start site region 61142
Gm10209 6 56797591 to 56799197 1606 + protein coding gene predicted gene 10209
Tssr61143 6 56797637 to 56797757 120 - TSS region transcription start site region 61143
Tssr61144 6 56797761 to 56797786 25 - TSS region transcription start site region 61144
Tssr61145 6 56800230 to 56800236 6 - TSS region transcription start site region 61145
Tssr61146 6 56804314 to 56804315 1 - TSS region transcription start site region 61146
Cpgi17481 6 56831866 to 56832659 793 CpG island CpG island 17481
Fkbp9 6 56832059 to 56879358 47299 + protein coding gene FK506 binding protein 9
Tssr56685 6 56832099 to 56832160 61 + TSS region transcription start site region 56685
Tssr56686 6 56832163 to 56832175 12 + TSS region transcription start site region 56686
Tssr56687 6 56832898 to 56832901 3 + TSS region transcription start site region 56687
Tssr61147 6 56837347 to 56837362 15 - TSS region transcription start site region 61147
Tssr56688 6 56857731 to 56857740 9 + TSS region transcription start site region 56688
Tssr56689 6 56868841 to 56868854 13 + TSS region transcription start site region 56689
Nt5c3 6 56882400 to 56923932 41532 - protein coding gene 5'-nucleotidase, cytosolic III
Tssr61148 6 56888697 to 56888713 16 - TSS region transcription start site region 61148
Tssr61149 6 56901821 to 56901838 17 - TSS region transcription start site region 61149
Tssr61150 6 56901870 to 56901891 21 - TSS region transcription start site region 61150
Tssr61151 6 56901916 to 56901919 3 - TSS region transcription start site region 61151
Tssr1860 6 56902099 to 56902144 45 - TSS region transcription start site region 1860
Gm3793 6 56905911 to 56906582 671 - unclassified gene predicted gene 3793
Cpgi17482 6 56923419 to 56924343 924 CpG island CpG island 17482
Tssr61152 6 56923486 to 56923495 9 - TSS region transcription start site region 61152
Tssr61153 6 56923804 to 56923815 11 - TSS region transcription start site region 61153
Tssr61154 6 56923821 to 56923926 105 - TSS region transcription start site region 61154
Tssr61155 6 56923927 to 56923950 23 - TSS region transcription start site region 61155
Vmn1r4 6 56924058 to 56957608 33550 + protein coding gene vomeronasal 1 receptor 4
D6Dcr12 6 56931179 to 56931289 110 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 12
Gm44049 6 56941841 to 56944824 2983 - unclassified gene predicted gene, 44049
Vmn1r5 6 56985342 to 56986289 947 + protein coding gene vomeronasal 1 receptor 5
Vmn1r6 6 57002355 to 57003266 911 + protein coding gene vomeronasal 1 receptor 6
Vmn1r7 6 57024338 to 57025273 935 - protein coding gene vomeronasal 1 receptor 7
Vmn1r8 6 57032341 to 57037125 4784 + protein coding gene vomeronasal 1 receptor 8
Vmn1r9 6 57070895 to 57071945 1050 + protein coding gene vomeronasal 1 receptor 9
Vmn1r10 6 57113425 to 57114360 935 + protein coding gene vomeronasal 1 receptor 10
Vmn1r11 6 57137353 to 57138252 899 + protein coding gene vomeronasal 1 receptor 11
Vmn1r12 6 57158920 to 57159843 923 + protein coding gene vomeronasal 1 receptor 12
Vmn1r-ps8 6 57188507 to 57189344 837 + pseudogene vomeronasal 1 receptor, pseudogene 8
Vmn1r13 6 57200904 to 57210760 9856 + protein coding gene vomeronasal 1 receptor 13
Vmn1r14 6 57226155 to 57234350 8195 + protein coding gene vomeronasal 1 receptor 14
Vmn1r15 6 57258149 to 57259048 899 + protein coding gene vomeronasal 1 receptor 15
Vmn1r-ps9 6 57278022 to 57278379 357 + pseudogene vomeronasal 1 receptor, pseudogene 9
Vmn1r-ps10 6 57312940 to 57313658 718 + pseudogene vomeronasal 1 receptor, pseudogene 10
Vmn1r16 6 57320739 to 57323635 2896 - protein coding gene vomeronasal 1 receptor 16
Vmn1r17 6 57360467 to 57361378 911 - protein coding gene vomeronasal 1 receptor 17
Tssr56690 6 57366112 to 57366141 29 + TSS region transcription start site region 56690
Vmn1r18 6 57389668 to 57390567 899 - protein coding gene vomeronasal 1 receptor 18
Vmn1r19 6 57404464 to 57405390 926 + protein coding gene vomeronasal 1 receptor 19
Vmn1r20 6 57431691 to 57432602 911 + protein coding gene vomeronasal 1 receptor 20
Vmn1r-ps11 6 57447356 to 57448208 852 - pseudogene vomeronasal 1 receptor, pseudogene 11
4930533I22Rik 6 57476697 to 57497671 20974 + antisense lncRNA gene RIKEN cDNA 4930533I22 gene
Tssr1861 6 57485114 to 57485125 11 + TSS region transcription start site region 1861
Gm45193 6 57485121 to 57626030 140909 + unclassified non-coding RNA gene predicted gene 45193
Ppm1k 6 57506502 to 57535468 28966 - protein coding gene protein phosphatase 1K (PP2C domain containing)