Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:55891856-56831870

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56 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Itprid1 6 55836895 to 55978735 141840 + protein coding gene ITPR interacting domain containing 1
D6Mit278 6 55972928 to 55973049 121 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 278
Tssr56677 6 56017489 to 56017517 28 + TSS region transcription start site region 56677
Ppp1r17 6 56017515 to 56032688 15173 + protein coding gene protein phosphatase 1, regulatory subunit 17
Gm18099 6 56060940 to 56061480 540 - pseudogene predicted gene, 18099
Pde1c 6 56069804 to 56569103 499299 - protein coding gene phosphodiesterase 1C
Tssr56678 6 56125083 to 56125088 5 + TSS region transcription start site region 56678
Tssr61124 6 56157167 to 56157206 39 - TSS region transcription start site region 61124
Gm44413 6 56172928 to 56173031 103 - miRNA gene predicted gene, 44413
D6Mit1001 6 56302626 to 56302796 170 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 1001
Tssr61125 6 56311155 to 56311157 2 - TSS region transcription start site region 61125
Tssr61126 6 56361856 to 56361870 14 - TSS region transcription start site region 61126
Tssr61127 6 56361873 to 56361891 18 - TSS region transcription start site region 61127
Tssr61128 6 56362108 to 56362125 17 - TSS region transcription start site region 61128
Tssr61129 6 56362241 to 56362255 14 - TSS region transcription start site region 61129
Tssr61130 6 56362266 to 56362285 19 - TSS region transcription start site region 61130
Tssr61131 6 56362356 to 56362386 30 - TSS region transcription start site region 61131
Tssr61132 6 56369575 to 56369586 11 - TSS region transcription start site region 61132
Tssr61133 6 56369625 to 56369639 14 - TSS region transcription start site region 61133
Tssr56679 6 56369702 to 56369717 15 + TSS region transcription start site region 56679
Cpgi17476 6 56568424 to 56569086 662 CpG island CpG island 17476
Tssr61134 6 56568921 to 56568932 11 - TSS region transcription start site region 61134
Tssr61135 6 56568942 to 56568995 53 - TSS region transcription start site region 61135
Tssr61136 6 56569108 to 56569122 14 - TSS region transcription start site region 61136
Tssr1858 6 56569151 to 56569181 30 - TSS region transcription start site region 1858
Tssr61137 6 56569183 to 56569203 20 - TSS region transcription start site region 61137
D6Mit241 6 56573699 to 56573817 118 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 241
Gm8239 6 56581203 to 56652487 71284 - lincRNA gene predicted gene 8239
Gm24709 6 56583715 to 56583846 131 - snoRNA gene predicted gene, 24709
Gm22493 6 56600818 to 56600949 131 - snoRNA gene predicted gene, 22493
Cpgi17477 6 56652093 to 56652548 455 CpG island CpG island 17477
Lsm5 6 56701063 to 56704699 3636 - protein coding gene LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated
Cpgi17478 6 56704182 to 56704858 676 CpG island CpG island 17478
Tssr61138 6 56704673 to 56704712 39 - TSS region transcription start site region 61138
4933427C19Rik 6 56714499 to 56715731 1232 unclassified gene RIKEN cDNA 4933427C19 gene
Cpgi17479 6 56714581 to 56715588 1007 CpG island CpG island 17479
Tssr56680 6 56714821 to 56714853 32 + TSS region transcription start site region 56680
Tssr56681 6 56714866 to 56714883 17 + TSS region transcription start site region 56681
Tssr56682 6 56714891 to 56714951 60 + TSS region transcription start site region 56682
Avl9 6 56714905 to 56761912 47007 + protein coding gene AVL9 cell migration associated
Tssr56683 6 56714958 to 56714971 13 + TSS region transcription start site region 56683
Tssr1859 6 56715006 to 56715015 9 + TSS region transcription start site region 1859
Tssr61139 6 56715452 to 56715468 16 - TSS region transcription start site region 61139
Tssr56684 6 56746548 to 56746559 11 + TSS region transcription start site region 56684
3110035G12Rik 6 56775823 to 56777345 1522 unclassified gene RIKEN cDNA 3110035G12 gene
Kbtbd2 6 56777524 to 56797813 20289 - protein coding gene kelch repeat and BTB (POZ) domain containing 2
Tssr61140 6 56784423 to 56784426 3 - TSS region transcription start site region 61140
Tssr61141 6 56796721 to 56796751 30 - TSS region transcription start site region 61141
Cpgi17480 6 56796970 to 56798289 1319 CpG island CpG island 17480
Tssr61142 6 56797495 to 56797553 58 - TSS region transcription start site region 61142
Gm10209 6 56797591 to 56799197 1606 + protein coding gene predicted gene 10209
Tssr61143 6 56797637 to 56797757 120 - TSS region transcription start site region 61143
Tssr61144 6 56797761 to 56797786 25 - TSS region transcription start site region 61144
Tssr61145 6 56800230 to 56800236 6 - TSS region transcription start site region 61145
Tssr61146 6 56804314 to 56804315 1 - TSS region transcription start site region 61146
Cpgi17481 6 56831866 to 56832659 793 CpG island CpG island 17481