Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:55467266-57257285

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117 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hdlk 6 50864934 to 55556043 4691109 heritable phenotypic marker hypodactyly like
Adcyap1r1 6 55451978 to 55501451 49473 + protein coding gene adenylate cyclase activating polypeptide 1 receptor 1
Tssr56670 6 55467440 to 55467441 1 + TSS region transcription start site region 56670
Tssr56671 6 55484608 to 55484613 5 + TSS region transcription start site region 56671
Tssr56672 6 55491230 to 55491243 13 + TSS region transcription start site region 56672
Gm44352 6 55533506 to 55533615 109 + miRNA gene predicted gene, 44352
Gm34441 6 55537043 to 55651785 114742 + lncRNA gene predicted gene, 34441
D6Dcr11 6 55555944 to 55556044 100 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 11
D6Mit316 6 55555949 to 55556043 94 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 316
Gm3729 6 55625079 to 55625607 528 + pseudogene predicted gene 3729
Cpgi17475 6 55676856 to 55677339 483 CpG island CpG island 17475
Neurod6 6 55677822 to 55681263 3441 - protein coding gene neurogenic differentiation 6
Tssr61116 6 55678525 to 55678539 14 - TSS region transcription start site region 61116
Tssr61117 6 55678548 to 55678569 21 - TSS region transcription start site region 61117
Tssr61118 6 55679058 to 55679072 14 - TSS region transcription start site region 61118
Tssr61119 6 55679317 to 55679344 27 - TSS region transcription start site region 61119
Tssr61120 6 55679614 to 55679634 20 - TSS region transcription start site region 61120
Tssr61121 6 55681048 to 55681108 60 - TSS region transcription start site region 61121
Tssr56673 6 55681187 to 55681201 14 + TSS region transcription start site region 56673
Tssr56674 6 55681208 to 55681239 31 + TSS region transcription start site region 56674
Tssr61122 6 55681257 to 55681271 14 - TSS region transcription start site region 61122
Tssr56675 6 55681288 to 55681305 17 + TSS region transcription start site region 56675
Tssr61123 6 55681330 to 55681341 11 - TSS region transcription start site region 61123
Gm3279 6 55684571 to 55694574 10003 + lincRNA gene predicted gene 3279
D0Nds23 6 55690862 to 55690935 73 DNA segment DNA segment, Nuffield Department of Surgery 23
Gm34676 6 55700566 to 55705885 5319 + lncRNA gene predicted gene, 34676
Gm38820 6 55789594 to 55804700 15106 - lncRNA gene predicted gene, 38820
Tssr56676 6 55836878 to 55836900 22 + TSS region transcription start site region 56676
Itprid1 6 55836895 to 55978735 141840 + protein coding gene ITPR interacting domain containing 1
D6Mit278 6 55972928 to 55973049 121 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 278
Tssr56677 6 56017489 to 56017517 28 + TSS region transcription start site region 56677
Ppp1r17 6 56017515 to 56032688 15173 + protein coding gene protein phosphatase 1, regulatory subunit 17
Gm18099 6 56060940 to 56061480 540 - pseudogene predicted gene, 18099
Pde1c 6 56069804 to 56569103 499299 - protein coding gene phosphodiesterase 1C
Tssr56678 6 56125083 to 56125088 5 + TSS region transcription start site region 56678
Tssr61124 6 56157167 to 56157206 39 - TSS region transcription start site region 61124
Gm44413 6 56172928 to 56173031 103 - miRNA gene predicted gene, 44413
D6Mit1001 6 56302626 to 56302796 170 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 1001
Tssr61125 6 56311155 to 56311157 2 - TSS region transcription start site region 61125
Tssr61126 6 56361856 to 56361870 14 - TSS region transcription start site region 61126
Tssr61127 6 56361873 to 56361891 18 - TSS region transcription start site region 61127
Tssr61128 6 56362108 to 56362125 17 - TSS region transcription start site region 61128
Tssr61129 6 56362241 to 56362255 14 - TSS region transcription start site region 61129
Tssr61130 6 56362266 to 56362285 19 - TSS region transcription start site region 61130
Tssr61131 6 56362356 to 56362386 30 - TSS region transcription start site region 61131
Tssr61132 6 56369575 to 56369586 11 - TSS region transcription start site region 61132
Tssr61133 6 56369625 to 56369639 14 - TSS region transcription start site region 61133
Tssr56679 6 56369702 to 56369717 15 + TSS region transcription start site region 56679
Cpgi17476 6 56568424 to 56569086 662 CpG island CpG island 17476
Tssr61134 6 56568921 to 56568932 11 - TSS region transcription start site region 61134
Tssr61135 6 56568942 to 56568995 53 - TSS region transcription start site region 61135
Tssr61136 6 56569108 to 56569122 14 - TSS region transcription start site region 61136
Tssr1858 6 56569151 to 56569181 30 - TSS region transcription start site region 1858
Tssr61137 6 56569183 to 56569203 20 - TSS region transcription start site region 61137
D6Mit241 6 56573699 to 56573817 118 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 241
Gm8239 6 56581203 to 56652487 71284 - lincRNA gene predicted gene 8239
Gm24709 6 56583715 to 56583846 131 - snoRNA gene predicted gene, 24709
Gm22493 6 56600818 to 56600949 131 - snoRNA gene predicted gene, 22493
Cpgi17477 6 56652093 to 56652548 455 CpG island CpG island 17477
Lsm5 6 56701063 to 56704699 3636 - protein coding gene LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated
Cpgi17478 6 56704182 to 56704858 676 CpG island CpG island 17478
Tssr61138 6 56704673 to 56704712 39 - TSS region transcription start site region 61138
4933427C19Rik 6 56714499 to 56715731 1232 unclassified gene RIKEN cDNA 4933427C19 gene
Cpgi17479 6 56714581 to 56715588 1007 CpG island CpG island 17479
Tssr56680 6 56714821 to 56714853 32 + TSS region transcription start site region 56680
Tssr56681 6 56714866 to 56714883 17 + TSS region transcription start site region 56681
Tssr56682 6 56714891 to 56714951 60 + TSS region transcription start site region 56682
Avl9 6 56714905 to 56761912 47007 + protein coding gene AVL9 cell migration associated
Tssr56683 6 56714958 to 56714971 13 + TSS region transcription start site region 56683
Tssr1859 6 56715006 to 56715015 9 + TSS region transcription start site region 1859
Tssr61139 6 56715452 to 56715468 16 - TSS region transcription start site region 61139
Tssr56684 6 56746548 to 56746559 11 + TSS region transcription start site region 56684
3110035G12Rik 6 56775823 to 56777345 1522 unclassified gene RIKEN cDNA 3110035G12 gene
Kbtbd2 6 56777524 to 56797813 20289 - protein coding gene kelch repeat and BTB (POZ) domain containing 2
Tssr61140 6 56784423 to 56784426 3 - TSS region transcription start site region 61140
Tssr61141 6 56796721 to 56796751 30 - TSS region transcription start site region 61141
Cpgi17480 6 56796970 to 56798289 1319 CpG island CpG island 17480
Tssr61142 6 56797495 to 56797553 58 - TSS region transcription start site region 61142
Gm10209 6 56797591 to 56799197 1606 + protein coding gene predicted gene 10209
Tssr61143 6 56797637 to 56797757 120 - TSS region transcription start site region 61143
Tssr61144 6 56797761 to 56797786 25 - TSS region transcription start site region 61144
Tssr61145 6 56800230 to 56800236 6 - TSS region transcription start site region 61145
Tssr61146 6 56804314 to 56804315 1 - TSS region transcription start site region 61146
Cpgi17481 6 56831866 to 56832659 793 CpG island CpG island 17481
Fkbp9 6 56832059 to 56879358 47299 + protein coding gene FK506 binding protein 9
Tssr56685 6 56832099 to 56832160 61 + TSS region transcription start site region 56685
Tssr56686 6 56832163 to 56832175 12 + TSS region transcription start site region 56686
Tssr56687 6 56832898 to 56832901 3 + TSS region transcription start site region 56687
Tssr61147 6 56837347 to 56837362 15 - TSS region transcription start site region 61147
Tssr56688 6 56857731 to 56857740 9 + TSS region transcription start site region 56688
Tssr56689 6 56868841 to 56868854 13 + TSS region transcription start site region 56689
Nt5c3 6 56882400 to 56923932 41532 - protein coding gene 5'-nucleotidase, cytosolic III
Tssr61148 6 56888697 to 56888713 16 - TSS region transcription start site region 61148
Tssr61149 6 56901821 to 56901838 17 - TSS region transcription start site region 61149
Tssr61150 6 56901870 to 56901891 21 - TSS region transcription start site region 61150
Tssr61151 6 56901916 to 56901919 3 - TSS region transcription start site region 61151
Tssr1860 6 56902099 to 56902144 45 - TSS region transcription start site region 1860
Gm3793 6 56905911 to 56906582 671 - unclassified gene predicted gene 3793
Cpgi17482 6 56923419 to 56924343 924 CpG island CpG island 17482
Tssr61152 6 56923486 to 56923495 9 - TSS region transcription start site region 61152
Tssr61153 6 56923804 to 56923815 11 - TSS region transcription start site region 61153
Tssr61154 6 56923821 to 56923926 105 - TSS region transcription start site region 61154
Tssr61155 6 56923927 to 56923950 23 - TSS region transcription start site region 61155
Vmn1r4 6 56924058 to 56957608 33550 + protein coding gene vomeronasal 1 receptor 4
D6Dcr12 6 56931179 to 56931289 110 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 12
Gm44049 6 56941841 to 56944824 2983 - unclassified gene predicted gene, 44049
Vmn1r5 6 56985342 to 56986289 947 + protein coding gene vomeronasal 1 receptor 5
Vmn1r6 6 57002355 to 57003266 911 + protein coding gene vomeronasal 1 receptor 6
Vmn1r7 6 57024338 to 57025273 935 - protein coding gene vomeronasal 1 receptor 7
Vmn1r8 6 57032341 to 57037125 4784 + protein coding gene vomeronasal 1 receptor 8
Vmn1r9 6 57070895 to 57071945 1050 + protein coding gene vomeronasal 1 receptor 9
Vmn1r10 6 57113425 to 57114360 935 + protein coding gene vomeronasal 1 receptor 10
Vmn1r11 6 57137353 to 57138252 899 + protein coding gene vomeronasal 1 receptor 11
Vmn1r12 6 57158920 to 57159843 923 + protein coding gene vomeronasal 1 receptor 12
Vmn1r-ps8 6 57188507 to 57189344 837 + pseudogene vomeronasal 1 receptor, pseudogene 8
Vmn1r13 6 57200904 to 57210760 9856 + protein coding gene vomeronasal 1 receptor 13
Vmn1r14 6 57226155 to 57234350 8195 + protein coding gene vomeronasal 1 receptor 14