Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:54905049-55318016

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46 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm44185 6 54902422 to 54905728 3306 + unclassified gene predicted gene, 44185
Nod1 6 54923949 to 54972612 48663 - protein coding gene nucleotide-binding oligomerization domain containing 1
Tssr61097 6 54934459 to 54934475 16 - TSS region transcription start site region 61097
Cpgi17467 6 54943218 to 54943393 175 CpG island CpG island 17467
Cpgi17468 6 54943752 to 54944808 1056 CpG island CpG island 17468
Tssr61098 6 54964702 to 54964708 6 - TSS region transcription start site region 61098
Tssr61099 6 54967230 to 54967232 2 - TSS region transcription start site region 61099
Cpgi17469 6 54972223 to 54972739 516 CpG island CpG island 17469
Tssr61100 6 54972396 to 54972424 28 - TSS region transcription start site region 61100
Tssr61101 6 54972428 to 54972466 38 - TSS region transcription start site region 61101
Tssr61102 6 54972560 to 54972583 23 - TSS region transcription start site region 61102
Tssr61103 6 54972603 to 54972626 23 - TSS region transcription start site region 61103
Tssr61104 6 54972628 to 54972643 15 - TSS region transcription start site region 61104
Gm24230 6 54974651 to 54974779 128 + snoRNA gene predicted gene, 24230
Ggct 6 54985095 to 54992961 7866 - protein coding gene gamma-glutamyl cyclotransferase
Cpgi17470 6 54992439 to 54993348 909 CpG island CpG island 17470
Tssr61105 6 54992858 to 54992878 20 - TSS region transcription start site region 61105
Tssr61106 6 54992882 to 54992907 25 - TSS region transcription start site region 61106
Tssr61107 6 54992910 to 54992921 11 - TSS region transcription start site region 61107
Tssr61108 6 54992925 to 54992936 11 - TSS region transcription start site region 61108
Tssr61109 6 54992946 to 54992957 11 - TSS region transcription start site region 61109
Gm38539 6 55002120 to 55003998 1878 + lncRNA gene predicted gene, 38539
Cpgi17471 6 55037487 to 55038597 1110 CpG island CpG island 17471
Tssr56648 6 55037955 to 55037980 25 + TSS region transcription start site region 56648
Tssr56649 6 55037988 to 55038091 103 + TSS region transcription start site region 56649
Gars 6 55038007 to 55079500 41493 + protein coding gene glycyl-tRNA synthetase
Crhr2 6 55090049 to 55133016 42967 - protein coding gene corticotropin releasing hormone receptor 2
Cpgi17472 6 55117258 to 55118336 1078 CpG island CpG island 17472
Tssr61110 6 55132958 to 55132973 15 - TSS region transcription start site region 61110
Tssr61111 6 55132975 to 55132997 22 - TSS region transcription start site region 61111
Tssr61112 6 55133015 to 55133029 14 - TSS region transcription start site region 61112
Tssr1854 6 55154436 to 55154463 27 + TSS region transcription start site region 1854
Gm34358 6 55154459 to 55167210 12751 + lincRNA gene predicted gene, 34358
Inmt 6 55170627 to 55174990 4363 - protein coding gene indolethylamine N-methyltransferase
Tssr61113 6 55173474 to 55173485 11 - TSS region transcription start site region 61113
Tssr61114 6 55173927 to 55173970 43 - TSS region transcription start site region 61114
Tssr61115 6 55175019 to 55175036 17 - TSS region transcription start site region 61115
D6Mit384 6 55199866 to 55199990 124 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 384
Cpgi17473 6 55203247 to 55203609 362 CpG island CpG island 17473
Tssr56650 6 55203381 to 55203459 78 + TSS region transcription start site region 56650
Mindy4 6 55203383 to 55320222 116839 + protein coding gene MINDY lysine 48 deubiquitinase 4
Tssr56651 6 55203460 to 55203496 36 + TSS region transcription start site region 56651
Tssr56652 6 55241153 to 55241154 1 + TSS region transcription start site region 56652
Gm44073 6 55296262 to 55307886 11624 - antisense lncRNA gene predicted gene, 44073
Tssr56653 6 55306890 to 55306904 14 + TSS region transcription start site region 56653
Gm25458 6 55308805 to 55308905 100 - miRNA gene predicted gene, 25458