Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:54882761-58712786

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331 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hdlk 6 50864934 to 55556043 4691109 heritable phenotypic marker hypodactyly like
Znrf2 6 54816916 to 54890224 73308 + protein coding gene zinc and ring finger 2
Tssr56645 6 54888815 to 54888850 35 + TSS region transcription start site region 56645
Tssr56646 6 54889012 to 54889033 21 + TSS region transcription start site region 56646
Tssr56647 6 54897049 to 54897053 4 + TSS region transcription start site region 56647
Gm44185 6 54902422 to 54905728 3306 + unclassified gene predicted gene, 44185
Nod1 6 54923949 to 54972612 48663 - protein coding gene nucleotide-binding oligomerization domain containing 1
Tssr61097 6 54934459 to 54934475 16 - TSS region transcription start site region 61097
Cpgi17467 6 54943218 to 54943393 175 CpG island CpG island 17467
Cpgi17468 6 54943752 to 54944808 1056 CpG island CpG island 17468
Tssr61098 6 54964702 to 54964708 6 - TSS region transcription start site region 61098
Tssr61099 6 54967230 to 54967232 2 - TSS region transcription start site region 61099
Cpgi17469 6 54972223 to 54972739 516 CpG island CpG island 17469
Tssr61100 6 54972396 to 54972424 28 - TSS region transcription start site region 61100
Tssr61101 6 54972428 to 54972466 38 - TSS region transcription start site region 61101
Tssr61102 6 54972560 to 54972583 23 - TSS region transcription start site region 61102
Tssr61103 6 54972603 to 54972626 23 - TSS region transcription start site region 61103
Tssr61104 6 54972628 to 54972643 15 - TSS region transcription start site region 61104
Gm24230 6 54974651 to 54974779 128 + snoRNA gene predicted gene, 24230
Ggct 6 54985095 to 54992961 7866 - protein coding gene gamma-glutamyl cyclotransferase
Cpgi17470 6 54992439 to 54993348 909 CpG island CpG island 17470
Tssr61105 6 54992858 to 54992878 20 - TSS region transcription start site region 61105
Tssr61106 6 54992882 to 54992907 25 - TSS region transcription start site region 61106
Tssr61107 6 54992910 to 54992921 11 - TSS region transcription start site region 61107
Tssr61108 6 54992925 to 54992936 11 - TSS region transcription start site region 61108
Tssr61109 6 54992946 to 54992957 11 - TSS region transcription start site region 61109
Gm38539 6 55002120 to 55003998 1878 + lncRNA gene predicted gene, 38539
Cpgi17471 6 55037487 to 55038597 1110 CpG island CpG island 17471
Tssr56648 6 55037955 to 55037980 25 + TSS region transcription start site region 56648
Tssr56649 6 55037988 to 55038091 103 + TSS region transcription start site region 56649
Gars 6 55038007 to 55079500 41493 + protein coding gene glycyl-tRNA synthetase
Crhr2 6 55090049 to 55133016 42967 - protein coding gene corticotropin releasing hormone receptor 2
Cpgi17472 6 55117258 to 55118336 1078 CpG island CpG island 17472
Tssr61110 6 55132958 to 55132973 15 - TSS region transcription start site region 61110
Tssr61111 6 55132975 to 55132997 22 - TSS region transcription start site region 61111
Tssr61112 6 55133015 to 55133029 14 - TSS region transcription start site region 61112
Tssr1854 6 55154436 to 55154463 27 + TSS region transcription start site region 1854
Gm34358 6 55154459 to 55167210 12751 + lincRNA gene predicted gene, 34358
Inmt 6 55170627 to 55174990 4363 - protein coding gene indolethylamine N-methyltransferase
Tssr61113 6 55173474 to 55173485 11 - TSS region transcription start site region 61113
Tssr61114 6 55173927 to 55173970 43 - TSS region transcription start site region 61114
Tssr61115 6 55175019 to 55175036 17 - TSS region transcription start site region 61115
D6Mit384 6 55199866 to 55199990 124 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 384
Cpgi17473 6 55203247 to 55203609 362 CpG island CpG island 17473
Tssr56650 6 55203381 to 55203459 78 + TSS region transcription start site region 56650
Mindy4 6 55203383 to 55320222 116839 + protein coding gene MINDY lysine 48 deubiquitinase 4
Tssr56651 6 55203460 to 55203496 36 + TSS region transcription start site region 56651
Tssr56652 6 55241153 to 55241154 1 + TSS region transcription start site region 56652
Gm44073 6 55296262 to 55307886 11624 - antisense lncRNA gene predicted gene, 44073
Tssr56653 6 55306890 to 55306904 14 + TSS region transcription start site region 56653
Gm25458 6 55308805 to 55308905 100 - miRNA gene predicted gene, 25458
Gm38819 6 55325636 to 55330842 5206 - lncRNA gene predicted gene, 38819
Tssr1855 6 55336053 to 55336079 26 + TSS region transcription start site region 1855
Tssr56654 6 55336082 to 55336094 12 + TSS region transcription start site region 56654
Tssr56655 6 55336113 to 55336129 16 + TSS region transcription start site region 56655
Tssr1856 6 55336173 to 55336184 11 + TSS region transcription start site region 1856
Tssr1857 6 55336200 to 55336207 7 + TSS region transcription start site region 1857
Tssr56656 6 55336279 to 55336314 35 + TSS region transcription start site region 56656
Tssr56657 6 55336424 to 55336438 14 + TSS region transcription start site region 56657
Aqp1 6 55336432 to 55348555 12123 + protein coding gene aquaporin 1
Tssr56658 6 55336830 to 55336835 5 + TSS region transcription start site region 56658
Tssr56659 6 55376284 to 55376351 67 + TSS region transcription start site region 56659
Ghrhr 6 55376295 to 55388530 12235 + protein coding gene growth hormone releasing hormone receptor
Tssr56660 6 55376374 to 55376379 5 + TSS region transcription start site region 56660
6430584L05Rik 6 55396887 to 55412285 15398 + lincRNA gene RIKEN cDNA 6430584L05 gene
D6Jcs25 6 55419848 to 55420151 303 DNA segment DNA segment, Chr 6, John C. Schimenti 25
Cpgi17474 6 55451681 to 55452762 1081 CpG island CpG island 17474
Tssr56661 6 55451738 to 55451763 25 + TSS region transcription start site region 56661
Tssr56662 6 55451828 to 55451872 44 + TSS region transcription start site region 56662
Adcyap1r1 6 55451978 to 55501451 49473 + protein coding gene adenylate cyclase activating polypeptide 1 receptor 1
Tssr56663 6 55451995 to 55452051 56 + TSS region transcription start site region 56663
Tssr56664 6 55452092 to 55452093 1 + TSS region transcription start site region 56664
Tssr56665 6 55452186 to 55452198 12 + TSS region transcription start site region 56665
Tssr56666 6 55452215 to 55452226 11 + TSS region transcription start site region 56666
Tssr56667 6 55452255 to 55452267 12 + TSS region transcription start site region 56667
Tssr56668 6 55452270 to 55452281 11 + TSS region transcription start site region 56668
Tssr56669 6 55452289 to 55452298 9 + TSS region transcription start site region 56669
Tssr56670 6 55467440 to 55467441 1 + TSS region transcription start site region 56670
Tssr56671 6 55484608 to 55484613 5 + TSS region transcription start site region 56671
Tssr56672 6 55491230 to 55491243 13 + TSS region transcription start site region 56672
Gm44352 6 55533506 to 55533615 109 + miRNA gene predicted gene, 44352
Gm34441 6 55537043 to 55651785 114742 + lncRNA gene predicted gene, 34441
D6Dcr11 6 55555944 to 55556044 100 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 11
D6Mit316 6 55555949 to 55556043 94 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 316
Gm3729 6 55625079 to 55625607 528 + pseudogene predicted gene 3729
Cpgi17475 6 55676856 to 55677339 483 CpG island CpG island 17475
Neurod6 6 55677822 to 55681263 3441 - protein coding gene neurogenic differentiation 6
Tssr61116 6 55678525 to 55678539 14 - TSS region transcription start site region 61116
Tssr61117 6 55678548 to 55678569 21 - TSS region transcription start site region 61117
Tssr61118 6 55679058 to 55679072 14 - TSS region transcription start site region 61118
Tssr61119 6 55679317 to 55679344 27 - TSS region transcription start site region 61119
Tssr61120 6 55679614 to 55679634 20 - TSS region transcription start site region 61120
Tssr61121 6 55681048 to 55681108 60 - TSS region transcription start site region 61121
Tssr56673 6 55681187 to 55681201 14 + TSS region transcription start site region 56673
Tssr56674 6 55681208 to 55681239 31 + TSS region transcription start site region 56674
Tssr61122 6 55681257 to 55681271 14 - TSS region transcription start site region 61122
Tssr56675 6 55681288 to 55681305 17 + TSS region transcription start site region 56675
Tssr61123 6 55681330 to 55681341 11 - TSS region transcription start site region 61123
Gm3279 6 55684571 to 55694574 10003 + lincRNA gene predicted gene 3279
D0Nds23 6 55690862 to 55690935 73 DNA segment DNA segment, Nuffield Department of Surgery 23
Gm34676 6 55700566 to 55705885 5319 + lncRNA gene predicted gene, 34676
Gm38820 6 55789594 to 55804700 15106 - lncRNA gene predicted gene, 38820
Tssr56676 6 55836878 to 55836900 22 + TSS region transcription start site region 56676
Itprid1 6 55836895 to 55978735 141840 + protein coding gene ITPR interacting domain containing 1
D6Mit278 6 55972928 to 55973049 121 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 278
Tssr56677 6 56017489 to 56017517 28 + TSS region transcription start site region 56677
Ppp1r17 6 56017515 to 56032688 15173 + protein coding gene protein phosphatase 1, regulatory subunit 17
Gm18099 6 56060940 to 56061480 540 - pseudogene predicted gene, 18099
Pde1c 6 56069804 to 56569103 499299 - protein coding gene phosphodiesterase 1C
Tssr56678 6 56125083 to 56125088 5 + TSS region transcription start site region 56678
Tssr61124 6 56157167 to 56157206 39 - TSS region transcription start site region 61124
Gm44413 6 56172928 to 56173031 103 - miRNA gene predicted gene, 44413
D6Mit1001 6 56302626 to 56302796 170 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 1001
Tssr61125 6 56311155 to 56311157 2 - TSS region transcription start site region 61125
Tssr61126 6 56361856 to 56361870 14 - TSS region transcription start site region 61126
Tssr61127 6 56361873 to 56361891 18 - TSS region transcription start site region 61127
Tssr61128 6 56362108 to 56362125 17 - TSS region transcription start site region 61128
Tssr61129 6 56362241 to 56362255 14 - TSS region transcription start site region 61129
Tssr61130 6 56362266 to 56362285 19 - TSS region transcription start site region 61130
Tssr61131 6 56362356 to 56362386 30 - TSS region transcription start site region 61131
Tssr61132 6 56369575 to 56369586 11 - TSS region transcription start site region 61132
Tssr61133 6 56369625 to 56369639 14 - TSS region transcription start site region 61133
Tssr56679 6 56369702 to 56369717 15 + TSS region transcription start site region 56679
Cpgi17476 6 56568424 to 56569086 662 CpG island CpG island 17476
Tssr61134 6 56568921 to 56568932 11 - TSS region transcription start site region 61134
Tssr61135 6 56568942 to 56568995 53 - TSS region transcription start site region 61135
Tssr61136 6 56569108 to 56569122 14 - TSS region transcription start site region 61136
Tssr1858 6 56569151 to 56569181 30 - TSS region transcription start site region 1858
Tssr61137 6 56569183 to 56569203 20 - TSS region transcription start site region 61137
D6Mit241 6 56573699 to 56573817 118 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 241
Gm8239 6 56581203 to 56652487 71284 - lincRNA gene predicted gene 8239
Gm24709 6 56583715 to 56583846 131 - snoRNA gene predicted gene, 24709
Gm22493 6 56600818 to 56600949 131 - snoRNA gene predicted gene, 22493
Cpgi17477 6 56652093 to 56652548 455 CpG island CpG island 17477
Lsm5 6 56701063 to 56704699 3636 - protein coding gene LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated
Cpgi17478 6 56704182 to 56704858 676 CpG island CpG island 17478
Tssr61138 6 56704673 to 56704712 39 - TSS region transcription start site region 61138
4933427C19Rik 6 56714499 to 56715731 1232 unclassified gene RIKEN cDNA 4933427C19 gene
Cpgi17479 6 56714581 to 56715588 1007 CpG island CpG island 17479
Tssr56680 6 56714821 to 56714853 32 + TSS region transcription start site region 56680
Tssr56681 6 56714866 to 56714883 17 + TSS region transcription start site region 56681
Tssr56682 6 56714891 to 56714951 60 + TSS region transcription start site region 56682
Avl9 6 56714905 to 56761912 47007 + protein coding gene AVL9 cell migration associated
Tssr56683 6 56714958 to 56714971 13 + TSS region transcription start site region 56683
Tssr1859 6 56715006 to 56715015 9 + TSS region transcription start site region 1859
Tssr61139 6 56715452 to 56715468 16 - TSS region transcription start site region 61139
Tssr56684 6 56746548 to 56746559 11 + TSS region transcription start site region 56684
3110035G12Rik 6 56775823 to 56777345 1522 unclassified gene RIKEN cDNA 3110035G12 gene
Kbtbd2 6 56777524 to 56797813 20289 - protein coding gene kelch repeat and BTB (POZ) domain containing 2
Tssr61140 6 56784423 to 56784426 3 - TSS region transcription start site region 61140
Tssr61141 6 56796721 to 56796751 30 - TSS region transcription start site region 61141
Cpgi17480 6 56796970 to 56798289 1319 CpG island CpG island 17480
Tssr61142 6 56797495 to 56797553 58 - TSS region transcription start site region 61142
Gm10209 6 56797591 to 56799197 1606 + protein coding gene predicted gene 10209
Tssr61143 6 56797637 to 56797757 120 - TSS region transcription start site region 61143
Tssr61144 6 56797761 to 56797786 25 - TSS region transcription start site region 61144
Tssr61145 6 56800230 to 56800236 6 - TSS region transcription start site region 61145
Tssr61146 6 56804314 to 56804315 1 - TSS region transcription start site region 61146
Cpgi17481 6 56831866 to 56832659 793 CpG island CpG island 17481
Fkbp9 6 56832059 to 56879358 47299 + protein coding gene FK506 binding protein 9
Tssr56685 6 56832099 to 56832160 61 + TSS region transcription start site region 56685
Tssr56686 6 56832163 to 56832175 12 + TSS region transcription start site region 56686
Tssr56687 6 56832898 to 56832901 3 + TSS region transcription start site region 56687
Tssr61147 6 56837347 to 56837362 15 - TSS region transcription start site region 61147
Tssr56688 6 56857731 to 56857740 9 + TSS region transcription start site region 56688
Tssr56689 6 56868841 to 56868854 13 + TSS region transcription start site region 56689
Nt5c3 6 56882400 to 56923932 41532 - protein coding gene 5'-nucleotidase, cytosolic III
Tssr61148 6 56888697 to 56888713 16 - TSS region transcription start site region 61148
Tssr61149 6 56901821 to 56901838 17 - TSS region transcription start site region 61149
Tssr61150 6 56901870 to 56901891 21 - TSS region transcription start site region 61150
Tssr61151 6 56901916 to 56901919 3 - TSS region transcription start site region 61151
Tssr1860 6 56902099 to 56902144 45 - TSS region transcription start site region 1860
Gm3793 6 56905911 to 56906582 671 - unclassified gene predicted gene 3793
Cpgi17482 6 56923419 to 56924343 924 CpG island CpG island 17482
Tssr61152 6 56923486 to 56923495 9 - TSS region transcription start site region 61152
Tssr61153 6 56923804 to 56923815 11 - TSS region transcription start site region 61153
Tssr61154 6 56923821 to 56923926 105 - TSS region transcription start site region 61154
Tssr61155 6 56923927 to 56923950 23 - TSS region transcription start site region 61155
Vmn1r4 6 56924058 to 56957608 33550 + protein coding gene vomeronasal 1 receptor 4
D6Dcr12 6 56931179 to 56931289 110 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 12
Gm44049 6 56941841 to 56944824 2983 - unclassified gene predicted gene, 44049
Vmn1r5 6 56985342 to 56986289 947 + protein coding gene vomeronasal 1 receptor 5
Vmn1r6 6 57002355 to 57003266 911 + protein coding gene vomeronasal 1 receptor 6
Vmn1r7 6 57024338 to 57025273 935 - protein coding gene vomeronasal 1 receptor 7
Vmn1r8 6 57032341 to 57037125 4784 + protein coding gene vomeronasal 1 receptor 8
Vmn1r9 6 57070895 to 57071945 1050 + protein coding gene vomeronasal 1 receptor 9
Vmn1r10 6 57113425 to 57114360 935 + protein coding gene vomeronasal 1 receptor 10
Vmn1r11 6 57137353 to 57138252 899 + protein coding gene vomeronasal 1 receptor 11
Vmn1r12 6 57158920 to 57159843 923 + protein coding gene vomeronasal 1 receptor 12
Vmn1r-ps8 6 57188507 to 57189344 837 + pseudogene vomeronasal 1 receptor, pseudogene 8
Vmn1r13 6 57200904 to 57210760 9856 + protein coding gene vomeronasal 1 receptor 13
Vmn1r14 6 57226155 to 57234350 8195 + protein coding gene vomeronasal 1 receptor 14
Vmn1r15 6 57258149 to 57259048 899 + protein coding gene vomeronasal 1 receptor 15
Vmn1r-ps9 6 57278022 to 57278379 357 + pseudogene vomeronasal 1 receptor, pseudogene 9
Vmn1r-ps10 6 57312940 to 57313658 718 + pseudogene vomeronasal 1 receptor, pseudogene 10
Vmn1r16 6 57320739 to 57323635 2896 - protein coding gene vomeronasal 1 receptor 16
Vmn1r17 6 57360467 to 57361378 911 - protein coding gene vomeronasal 1 receptor 17
Tssr56690 6 57366112 to 57366141 29 + TSS region transcription start site region 56690
Vmn1r18 6 57389668 to 57390567 899 - protein coding gene vomeronasal 1 receptor 18
Vmn1r19 6 57404464 to 57405390 926 + protein coding gene vomeronasal 1 receptor 19