Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:54496053-56176079

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176 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hdlk 6 50864934 to 55556043 4691109 heritable phenotypic marker hypodactyly like
Wipf3 6 54429603 to 54503768 74165 + protein coding gene WAS/WASL interacting protein family, member 3
Scrn1 6 54501173 to 54566489 65316 - protein coding gene secernin 1
Tssr61077 6 54523721 to 54523725 4 - TSS region transcription start site region 61077
Tssr61078 6 54531097 to 54531106 9 - TSS region transcription start site region 61078
Tssr61079 6 54531124 to 54531137 13 - TSS region transcription start site region 61079
Tssr61080 6 54541718 to 54541722 4 - TSS region transcription start site region 61080
Cpgi17461 6 54565736 to 54566504 768 CpG island CpG island 17461
Tssr61081 6 54566278 to 54566281 3 - TSS region transcription start site region 61081
Tssr61082 6 54566283 to 54566296 13 - TSS region transcription start site region 61082
Tssr61083 6 54566326 to 54566413 87 - TSS region transcription start site region 61083
Tssr61084 6 54566446 to 54566453 7 - TSS region transcription start site region 61084
Tssr61085 6 54566460 to 54566483 23 - TSS region transcription start site region 61085
Tssr61086 6 54566484 to 54566491 7 - TSS region transcription start site region 61086
Tssr61087 6 54566499 to 54566508 9 - TSS region transcription start site region 61087
Fkbp14 6 54577602 to 54593698 16096 - protein coding gene FK506 binding protein 14
Tssr61088 6 54593139 to 54593217 78 - TSS region transcription start site region 61088
Cpgi17462 6 54594873 to 54595874 1001 CpG island CpG island 17462
Plekha8 6 54595111 to 54645823 50712 + protein coding gene pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8
Tssr56617 6 54595167 to 54595243 76 + TSS region transcription start site region 56617
Tssr56618 6 54595244 to 54595264 20 + TSS region transcription start site region 56618
Tssr56619 6 54595272 to 54595292 20 + TSS region transcription start site region 56619
Tssr56620 6 54596714 to 54596722 8 + TSS region transcription start site region 56620
Gm34249 6 54659435 to 54662558 3123 + lncRNA gene predicted gene, 34249
Tssr56621 6 54679346 to 54679352 6 + TSS region transcription start site region 56621
Tssr56622 6 54679399 to 54679410 11 + TSS region transcription start site region 56622
Tssr56623 6 54679453 to 54679472 19 + TSS region transcription start site region 56623
Gm28402 6 54680930 to 54681917 987 - antisense lncRNA gene predicted gene 28402
Cpgi17463 6 54681253 to 54682831 1578 CpG island CpG island 17463
Mturn 6 54681624 to 54703851 22227 + protein coding gene maturin, neural progenitor differentiation regulator homolog (Xenopus)
Tssr56624 6 54681687 to 54681783 96 + TSS region transcription start site region 56624
Tssr1853 6 54681786 to 54681793 7 + TSS region transcription start site region 1853
Tssr61089 6 54681927 to 54681939 12 - TSS region transcription start site region 61089
Gm44008 6 54693646 to 54694057 411 + unclassified gene predicted gene, 44008
Cpgi17464 6 54699288 to 54699606 318 CpG island CpG island 17464
Tssr56625 6 54718993 to 54719012 19 + TSS region transcription start site region 56625
Tssr56626 6 54736442 to 54736484 42 + TSS region transcription start site region 56626
Tssr61090 6 54751898 to 54751902 4 - TSS region transcription start site region 61090
Cpgi17465 6 54760113 to 54760274 161 CpG island CpG island 17465
Tssr61091 6 54760228 to 54760237 9 - TSS region transcription start site region 61091
Tssr61092 6 54760246 to 54760273 27 - TSS region transcription start site region 61092
Tssr61093 6 54811740 to 54811759 19 - TSS region transcription start site region 61093
2610209C05Rik 6 54813752 to 54817650 3898 unclassified non-coding RNA gene RIKEN cDNA 2610209C05 gene
Cpgi17466 6 54816274 to 54817682 1408 CpG island CpG island 17466
Tssr56627 6 54816593 to 54816624 31 + TSS region transcription start site region 56627
Tssr56628 6 54816631 to 54816701 70 + TSS region transcription start site region 56628
Tssr56629 6 54816705 to 54816742 37 + TSS region transcription start site region 56629
Tssr56630 6 54816765 to 54816776 11 + TSS region transcription start site region 56630
Tssr56631 6 54816783 to 54816819 36 + TSS region transcription start site region 56631
Tssr56632 6 54816851 to 54816864 13 + TSS region transcription start site region 56632
Tssr56633 6 54816869 to 54816889 20 + TSS region transcription start site region 56633
Tssr56634 6 54816890 to 54816903 13 + TSS region transcription start site region 56634
Tssr56635 6 54816906 to 54816920 14 + TSS region transcription start site region 56635
Znrf2 6 54816916 to 54890224 73308 + protein coding gene zinc and ring finger 2
Tssr61094 6 54816931 to 54816974 43 - TSS region transcription start site region 61094
Tssr56636 6 54817060 to 54817080 20 + TSS region transcription start site region 56636
Tssr56637 6 54817510 to 54817526 16 + TSS region transcription start site region 56637
Tssr61095 6 54817645 to 54817650 5 - TSS region transcription start site region 61095
Tssr56638 6 54824785 to 54824802 17 + TSS region transcription start site region 56638
Tssr56639 6 54833471 to 54833490 19 + TSS region transcription start site region 56639
Tssr56640 6 54848905 to 54848921 16 + TSS region transcription start site region 56640
Tssr56641 6 54849199 to 54849210 11 + TSS region transcription start site region 56641
Tssr56642 6 54855074 to 54855086 12 + TSS region transcription start site region 56642
Tssr56643 6 54866454 to 54866466 12 + TSS region transcription start site region 56643
Tssr61096 6 54867553 to 54867556 3 - TSS region transcription start site region 61096
Tssr56644 6 54878403 to 54878417 14 + TSS region transcription start site region 56644
Tssr56645 6 54888815 to 54888850 35 + TSS region transcription start site region 56645
Tssr56646 6 54889012 to 54889033 21 + TSS region transcription start site region 56646
Tssr56647 6 54897049 to 54897053 4 + TSS region transcription start site region 56647
Gm44185 6 54902422 to 54905728 3306 + unclassified gene predicted gene, 44185
Nod1 6 54923949 to 54972612 48663 - protein coding gene nucleotide-binding oligomerization domain containing 1
Tssr61097 6 54934459 to 54934475 16 - TSS region transcription start site region 61097
Cpgi17467 6 54943218 to 54943393 175 CpG island CpG island 17467
Cpgi17468 6 54943752 to 54944808 1056 CpG island CpG island 17468
Tssr61098 6 54964702 to 54964708 6 - TSS region transcription start site region 61098
Tssr61099 6 54967230 to 54967232 2 - TSS region transcription start site region 61099
Cpgi17469 6 54972223 to 54972739 516 CpG island CpG island 17469
Tssr61100 6 54972396 to 54972424 28 - TSS region transcription start site region 61100
Tssr61101 6 54972428 to 54972466 38 - TSS region transcription start site region 61101
Tssr61102 6 54972560 to 54972583 23 - TSS region transcription start site region 61102
Tssr61103 6 54972603 to 54972626 23 - TSS region transcription start site region 61103
Tssr61104 6 54972628 to 54972643 15 - TSS region transcription start site region 61104
Gm24230 6 54974651 to 54974779 128 + snoRNA gene predicted gene, 24230
Ggct 6 54985095 to 54992961 7866 - protein coding gene gamma-glutamyl cyclotransferase
Cpgi17470 6 54992439 to 54993348 909 CpG island CpG island 17470
Tssr61105 6 54992858 to 54992878 20 - TSS region transcription start site region 61105
Tssr61106 6 54992882 to 54992907 25 - TSS region transcription start site region 61106
Tssr61107 6 54992910 to 54992921 11 - TSS region transcription start site region 61107
Tssr61108 6 54992925 to 54992936 11 - TSS region transcription start site region 61108
Tssr61109 6 54992946 to 54992957 11 - TSS region transcription start site region 61109
Gm38539 6 55002120 to 55003998 1878 + lncRNA gene predicted gene, 38539
Cpgi17471 6 55037487 to 55038597 1110 CpG island CpG island 17471
Tssr56648 6 55037955 to 55037980 25 + TSS region transcription start site region 56648
Tssr56649 6 55037988 to 55038091 103 + TSS region transcription start site region 56649
Gars 6 55038007 to 55079500 41493 + protein coding gene glycyl-tRNA synthetase
Crhr2 6 55090049 to 55133016 42967 - protein coding gene corticotropin releasing hormone receptor 2
Cpgi17472 6 55117258 to 55118336 1078 CpG island CpG island 17472
Tssr61110 6 55132958 to 55132973 15 - TSS region transcription start site region 61110
Tssr61111 6 55132975 to 55132997 22 - TSS region transcription start site region 61111
Tssr61112 6 55133015 to 55133029 14 - TSS region transcription start site region 61112
Tssr1854 6 55154436 to 55154463 27 + TSS region transcription start site region 1854
Gm34358 6 55154459 to 55167210 12751 + lincRNA gene predicted gene, 34358
Inmt 6 55170627 to 55174990 4363 - protein coding gene indolethylamine N-methyltransferase
Tssr61113 6 55173474 to 55173485 11 - TSS region transcription start site region 61113
Tssr61114 6 55173927 to 55173970 43 - TSS region transcription start site region 61114
Tssr61115 6 55175019 to 55175036 17 - TSS region transcription start site region 61115
D6Mit384 6 55199866 to 55199990 124 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 384
Cpgi17473 6 55203247 to 55203609 362 CpG island CpG island 17473
Tssr56650 6 55203381 to 55203459 78 + TSS region transcription start site region 56650
Mindy4 6 55203383 to 55320222 116839 + protein coding gene MINDY lysine 48 deubiquitinase 4
Tssr56651 6 55203460 to 55203496 36 + TSS region transcription start site region 56651
Tssr56652 6 55241153 to 55241154 1 + TSS region transcription start site region 56652
Gm44073 6 55296262 to 55307886 11624 - antisense lncRNA gene predicted gene, 44073
Tssr56653 6 55306890 to 55306904 14 + TSS region transcription start site region 56653
Gm25458 6 55308805 to 55308905 100 - miRNA gene predicted gene, 25458
Gm38819 6 55325636 to 55330842 5206 - lncRNA gene predicted gene, 38819
Tssr1855 6 55336053 to 55336079 26 + TSS region transcription start site region 1855
Tssr56654 6 55336082 to 55336094 12 + TSS region transcription start site region 56654
Tssr56655 6 55336113 to 55336129 16 + TSS region transcription start site region 56655
Tssr1856 6 55336173 to 55336184 11 + TSS region transcription start site region 1856
Tssr1857 6 55336200 to 55336207 7 + TSS region transcription start site region 1857
Tssr56656 6 55336279 to 55336314 35 + TSS region transcription start site region 56656
Tssr56657 6 55336424 to 55336438 14 + TSS region transcription start site region 56657
Aqp1 6 55336432 to 55348555 12123 + protein coding gene aquaporin 1
Tssr56658 6 55336830 to 55336835 5 + TSS region transcription start site region 56658
Tssr56659 6 55376284 to 55376351 67 + TSS region transcription start site region 56659
Ghrhr 6 55376295 to 55388530 12235 + protein coding gene growth hormone releasing hormone receptor
Tssr56660 6 55376374 to 55376379 5 + TSS region transcription start site region 56660
6430584L05Rik 6 55396887 to 55412285 15398 + lincRNA gene RIKEN cDNA 6430584L05 gene
D6Jcs25 6 55419848 to 55420151 303 DNA segment DNA segment, Chr 6, John C. Schimenti 25
Cpgi17474 6 55451681 to 55452762 1081 CpG island CpG island 17474
Tssr56661 6 55451738 to 55451763 25 + TSS region transcription start site region 56661
Tssr56662 6 55451828 to 55451872 44 + TSS region transcription start site region 56662
Adcyap1r1 6 55451978 to 55501451 49473 + protein coding gene adenylate cyclase activating polypeptide 1 receptor 1
Tssr56663 6 55451995 to 55452051 56 + TSS region transcription start site region 56663
Tssr56664 6 55452092 to 55452093 1 + TSS region transcription start site region 56664
Tssr56665 6 55452186 to 55452198 12 + TSS region transcription start site region 56665
Tssr56666 6 55452215 to 55452226 11 + TSS region transcription start site region 56666
Tssr56667 6 55452255 to 55452267 12 + TSS region transcription start site region 56667
Tssr56668 6 55452270 to 55452281 11 + TSS region transcription start site region 56668
Tssr56669 6 55452289 to 55452298 9 + TSS region transcription start site region 56669
Tssr56670 6 55467440 to 55467441 1 + TSS region transcription start site region 56670
Tssr56671 6 55484608 to 55484613 5 + TSS region transcription start site region 56671
Tssr56672 6 55491230 to 55491243 13 + TSS region transcription start site region 56672
Gm44352 6 55533506 to 55533615 109 + miRNA gene predicted gene, 44352
Gm34441 6 55537043 to 55651785 114742 + lncRNA gene predicted gene, 34441
D6Dcr11 6 55555944 to 55556044 100 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 11
D6Mit316 6 55555949 to 55556043 94 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 316
Gm3729 6 55625079 to 55625607 528 + pseudogene predicted gene 3729
Cpgi17475 6 55676856 to 55677339 483 CpG island CpG island 17475
Neurod6 6 55677822 to 55681263 3441 - protein coding gene neurogenic differentiation 6
Tssr61116 6 55678525 to 55678539 14 - TSS region transcription start site region 61116
Tssr61117 6 55678548 to 55678569 21 - TSS region transcription start site region 61117
Tssr61118 6 55679058 to 55679072 14 - TSS region transcription start site region 61118
Tssr61119 6 55679317 to 55679344 27 - TSS region transcription start site region 61119
Tssr61120 6 55679614 to 55679634 20 - TSS region transcription start site region 61120
Tssr61121 6 55681048 to 55681108 60 - TSS region transcription start site region 61121
Tssr56673 6 55681187 to 55681201 14 + TSS region transcription start site region 56673
Tssr56674 6 55681208 to 55681239 31 + TSS region transcription start site region 56674
Tssr61122 6 55681257 to 55681271 14 - TSS region transcription start site region 61122
Tssr56675 6 55681288 to 55681305 17 + TSS region transcription start site region 56675
Tssr61123 6 55681330 to 55681341 11 - TSS region transcription start site region 61123
Gm3279 6 55684571 to 55694574 10003 + lincRNA gene predicted gene 3279
D0Nds23 6 55690862 to 55690935 73 DNA segment DNA segment, Nuffield Department of Surgery 23
Gm34676 6 55700566 to 55705885 5319 + lncRNA gene predicted gene, 34676
Gm38820 6 55789594 to 55804700 15106 - lncRNA gene predicted gene, 38820
Tssr56676 6 55836878 to 55836900 22 + TSS region transcription start site region 56676
Itprid1 6 55836895 to 55978735 141840 + protein coding gene ITPR interacting domain containing 1
D6Mit278 6 55972928 to 55973049 121 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 278
Tssr56677 6 56017489 to 56017517 28 + TSS region transcription start site region 56677
Ppp1r17 6 56017515 to 56032688 15173 + protein coding gene protein phosphatase 1, regulatory subunit 17
Gm18099 6 56060940 to 56061480 540 - pseudogene predicted gene, 18099
Pde1c 6 56069804 to 56569103 499299 - protein coding gene phosphodiesterase 1C
Tssr56678 6 56125083 to 56125088 5 + TSS region transcription start site region 56678
Tssr61124 6 56157167 to 56157206 39 - TSS region transcription start site region 61124
Gm44413 6 56172928 to 56173031 103 - miRNA gene predicted gene, 44413