Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:54433646-54954057

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Wipf3 6 54429603 to 54503768 74165 + protein coding gene WAS/WASL interacting protein family, member 3
Tssr56614 6 54440515 to 54440518 3 + TSS region transcription start site region 56614
D6Mit277 6 54446280 to 54446385 105 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 277
Tssr56615 6 54456200 to 54456209 9 + TSS region transcription start site region 56615
Tssr56616 6 54460274 to 54460275 1 + TSS region transcription start site region 56616
Gm44026 6 54463685 to 54473170 9485 - antisense lncRNA gene predicted gene, 44026
Tssr61076 6 54473154 to 54473174 20 - TSS region transcription start site region 61076
Cpgi17460 6 54485686 to 54485979 293 CpG island CpG island 17460
Scrn1 6 54501173 to 54566489 65316 - protein coding gene secernin 1
Tssr61077 6 54523721 to 54523725 4 - TSS region transcription start site region 61077
Tssr61078 6 54531097 to 54531106 9 - TSS region transcription start site region 61078
Tssr61079 6 54531124 to 54531137 13 - TSS region transcription start site region 61079
Tssr61080 6 54541718 to 54541722 4 - TSS region transcription start site region 61080
Cpgi17461 6 54565736 to 54566504 768 CpG island CpG island 17461
Tssr61081 6 54566278 to 54566281 3 - TSS region transcription start site region 61081
Tssr61082 6 54566283 to 54566296 13 - TSS region transcription start site region 61082
Tssr61083 6 54566326 to 54566413 87 - TSS region transcription start site region 61083
Tssr61084 6 54566446 to 54566453 7 - TSS region transcription start site region 61084
Tssr61085 6 54566460 to 54566483 23 - TSS region transcription start site region 61085
Tssr61086 6 54566484 to 54566491 7 - TSS region transcription start site region 61086
Tssr61087 6 54566499 to 54566508 9 - TSS region transcription start site region 61087
Fkbp14 6 54577602 to 54593698 16096 - protein coding gene FK506 binding protein 14
Tssr61088 6 54593139 to 54593217 78 - TSS region transcription start site region 61088
Cpgi17462 6 54594873 to 54595874 1001 CpG island CpG island 17462
Plekha8 6 54595111 to 54645823 50712 + protein coding gene pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8
Tssr56617 6 54595167 to 54595243 76 + TSS region transcription start site region 56617
Tssr56618 6 54595244 to 54595264 20 + TSS region transcription start site region 56618
Tssr56619 6 54595272 to 54595292 20 + TSS region transcription start site region 56619
Tssr56620 6 54596714 to 54596722 8 + TSS region transcription start site region 56620
Gm34249 6 54659435 to 54662558 3123 + lncRNA gene predicted gene, 34249
Tssr56621 6 54679346 to 54679352 6 + TSS region transcription start site region 56621
Tssr56622 6 54679399 to 54679410 11 + TSS region transcription start site region 56622
Tssr56623 6 54679453 to 54679472 19 + TSS region transcription start site region 56623
Gm28402 6 54680930 to 54681917 987 - antisense lncRNA gene predicted gene 28402
Cpgi17463 6 54681253 to 54682831 1578 CpG island CpG island 17463
Mturn 6 54681624 to 54703851 22227 + protein coding gene maturin, neural progenitor differentiation regulator homolog (Xenopus)
Tssr56624 6 54681687 to 54681783 96 + TSS region transcription start site region 56624
Tssr1853 6 54681786 to 54681793 7 + TSS region transcription start site region 1853
Tssr61089 6 54681927 to 54681939 12 - TSS region transcription start site region 61089
Gm44008 6 54693646 to 54694057 411 + unclassified gene predicted gene, 44008
Cpgi17464 6 54699288 to 54699606 318 CpG island CpG island 17464
Tssr56625 6 54718993 to 54719012 19 + TSS region transcription start site region 56625
Tssr56626 6 54736442 to 54736484 42 + TSS region transcription start site region 56626
Tssr61090 6 54751898 to 54751902 4 - TSS region transcription start site region 61090
Cpgi17465 6 54760113 to 54760274 161 CpG island CpG island 17465
Tssr61091 6 54760228 to 54760237 9 - TSS region transcription start site region 61091
Tssr61092 6 54760246 to 54760273 27 - TSS region transcription start site region 61092
Tssr61093 6 54811740 to 54811759 19 - TSS region transcription start site region 61093
2610209C05Rik 6 54813752 to 54817650 3898 unclassified non-coding RNA gene RIKEN cDNA 2610209C05 gene
Cpgi17466 6 54816274 to 54817682 1408 CpG island CpG island 17466
Tssr56627 6 54816593 to 54816624 31 + TSS region transcription start site region 56627
Tssr56628 6 54816631 to 54816701 70 + TSS region transcription start site region 56628
Tssr56629 6 54816705 to 54816742 37 + TSS region transcription start site region 56629
Tssr56630 6 54816765 to 54816776 11 + TSS region transcription start site region 56630
Tssr56631 6 54816783 to 54816819 36 + TSS region transcription start site region 56631
Tssr56632 6 54816851 to 54816864 13 + TSS region transcription start site region 56632
Tssr56633 6 54816869 to 54816889 20 + TSS region transcription start site region 56633
Tssr56634 6 54816890 to 54816903 13 + TSS region transcription start site region 56634
Tssr56635 6 54816906 to 54816920 14 + TSS region transcription start site region 56635
Znrf2 6 54816916 to 54890224 73308 + protein coding gene zinc and ring finger 2
Tssr61094 6 54816931 to 54816974 43 - TSS region transcription start site region 61094
Tssr56636 6 54817060 to 54817080 20 + TSS region transcription start site region 56636
Tssr56637 6 54817510 to 54817526 16 + TSS region transcription start site region 56637
Tssr61095 6 54817645 to 54817650 5 - TSS region transcription start site region 61095
Tssr56638 6 54824785 to 54824802 17 + TSS region transcription start site region 56638
Tssr56639 6 54833471 to 54833490 19 + TSS region transcription start site region 56639
Tssr56640 6 54848905 to 54848921 16 + TSS region transcription start site region 56640
Tssr56641 6 54849199 to 54849210 11 + TSS region transcription start site region 56641
Tssr56642 6 54855074 to 54855086 12 + TSS region transcription start site region 56642
Tssr56643 6 54866454 to 54866466 12 + TSS region transcription start site region 56643
Tssr61096 6 54867553 to 54867556 3 - TSS region transcription start site region 61096
Tssr56644 6 54878403 to 54878417 14 + TSS region transcription start site region 56644
Tssr56645 6 54888815 to 54888850 35 + TSS region transcription start site region 56645
Tssr56646 6 54889012 to 54889033 21 + TSS region transcription start site region 56646
Tssr56647 6 54897049 to 54897053 4 + TSS region transcription start site region 56647
Gm44185 6 54902422 to 54905728 3306 + unclassified gene predicted gene, 44185
Nod1 6 54923949 to 54972612 48663 - protein coding gene nucleotide-binding oligomerization domain containing 1
Tssr61097 6 54934459 to 54934475 16 - TSS region transcription start site region 61097
Cpgi17467 6 54943218 to 54943393 175 CpG island CpG island 17467
Cpgi17468 6 54943752 to 54944808 1056 CpG island CpG island 17468