Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:53916460-55216483

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175 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpvl 6 53873279 to 53978671 105392 - protein coding gene carboxypeptidase, vitellogenic-like
4921529L05Rik 6 53978691 to 54017383 38692 + lncRNA gene RIKEN cDNA 4921529L05 gene
Tssr56578 6 53978696 to 53978715 19 + TSS region transcription start site region 56578
Tssr56579 6 53978722 to 53978730 8 + TSS region transcription start site region 56579
Cpgi17457 6 54038977 to 54040670 1693 CpG island CpG island 17457
Tssr56580 6 54039497 to 54039556 59 + TSS region transcription start site region 56580
Tssr56581 6 54039558 to 54039575 17 + TSS region transcription start site region 56581
Tssr56582 6 54039590 to 54039605 15 + TSS region transcription start site region 56582
Tssr56583 6 54039646 to 54039695 49 + TSS region transcription start site region 56583
Tssr56584 6 54039709 to 54039733 24 + TSS region transcription start site region 56584
Tssr56585 6 54039746 to 54039761 15 + TSS region transcription start site region 56585
Tssr61068 6 54039888 to 54039892 4 - TSS region transcription start site region 61068
Chn2 6 54039932 to 54301812 261880 + protein coding gene chimerin 2
Tssr56586 6 54039935 to 54040016 81 + TSS region transcription start site region 56586
Tssr56587 6 54040078 to 54040091 13 + TSS region transcription start site region 56587
Tssr56588 6 54041378 to 54041382 4 + TSS region transcription start site region 56588
9530036M11Rik 6 54146887 to 54150937 4050 - antisense lncRNA gene RIKEN cDNA 9530036M11 gene
Tssr61069 6 54151032 to 54151052 20 - TSS region transcription start site region 61069
Tssr61070 6 54158599 to 54158615 16 - TSS region transcription start site region 61070
Gm15526 6 54177480 to 54177683 203 - pseudogene predicted gene 15526
Tssr61071 6 54241893 to 54241912 19 - TSS region transcription start site region 61071
Gm15527 6 54245742 to 54279076 33334 - unclassified non-coding RNA gene predicted gene 15527
Tssr56589 6 54264801 to 54264837 36 + TSS region transcription start site region 56589
Tssr56590 6 54264839 to 54264863 24 + TSS region transcription start site region 56590
Tssr56591 6 54267135 to 54267145 10 + TSS region transcription start site region 56591
Tssr56592 6 54267151 to 54267180 29 + TSS region transcription start site region 56592
Tssr56593 6 54267189 to 54267191 2 + TSS region transcription start site region 56593
Tssr56594 6 54269135 to 54269161 26 + TSS region transcription start site region 56594
Tssr56595 6 54269165 to 54269172 7 + TSS region transcription start site region 56595
9130019P16Rik 6 54269681 to 54430221 160540 - lncRNA gene RIKEN cDNA 9130019P16 gene
Tssr56596 6 54272766 to 54272777 11 + TSS region transcription start site region 56596
Tssr56597 6 54272785 to 54272804 19 + TSS region transcription start site region 56597
Tssr56598 6 54272806 to 54272854 48 + TSS region transcription start site region 56598
Tssr61072 6 54279069 to 54279082 13 - TSS region transcription start site region 61072
Tssr61073 6 54292742 to 54292744 2 - TSS region transcription start site region 61073
Tssr56599 6 54292899 to 54292909 10 + TSS region transcription start site region 56599
Tssr56600 6 54293064 to 54293075 11 + TSS region transcription start site region 56600
Tssr56601 6 54300133 to 54300162 29 + TSS region transcription start site region 56601
Tssr56602 6 54314067 to 54314075 8 + TSS region transcription start site region 56602
9030405F24Rik 6 54325834 to 54328124 2290 unclassified gene RIKEN cDNA 9030405F24 gene
Cpgi17458 6 54326667 to 54328027 1360 CpG island CpG island 17458
Tssr56603 6 54326828 to 54326845 17 + TSS region transcription start site region 56603
Tssr56604 6 54326852 to 54326888 36 + TSS region transcription start site region 56604
Tssr56605 6 54326891 to 54326914 23 + TSS region transcription start site region 56605
Tssr56606 6 54326955 to 54326978 23 + TSS region transcription start site region 56606
Tssr56607 6 54326984 to 54326989 5 + TSS region transcription start site region 56607
Prr15 6 54327012 to 54330200 3188 + protein coding gene proline rich 15
Gm34169 6 54329638 to 54343436 13798 + pseudogene predicted gene, 34169
Tssr56608 6 54329838 to 54329843 5 + TSS region transcription start site region 56608
Tssr61074 6 54337236 to 54337242 6 - TSS region transcription start site region 61074
D6Mit185 6 54367571 to 54367715 144 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 185
Tssr61075 6 54409316 to 54409343 27 - TSS region transcription start site region 61075
Cpgi17459 6 54429084 to 54430203 1119 CpG island CpG island 17459
Tssr56609 6 54429544 to 54429547 3 + TSS region transcription start site region 56609
Wipf3 6 54429603 to 54503768 74165 + protein coding gene WAS/WASL interacting protein family, member 3
Tssr56610 6 54429632 to 54429649 17 + TSS region transcription start site region 56610
Tssr56611 6 54429653 to 54429664 11 + TSS region transcription start site region 56611
Tssr56612 6 54429678 to 54429694 16 + TSS region transcription start site region 56612
Tssr56613 6 54431482 to 54431489 7 + TSS region transcription start site region 56613
Tssr56614 6 54440515 to 54440518 3 + TSS region transcription start site region 56614
D6Mit277 6 54446280 to 54446385 105 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 277
Tssr56615 6 54456200 to 54456209 9 + TSS region transcription start site region 56615
Tssr56616 6 54460274 to 54460275 1 + TSS region transcription start site region 56616
Gm44026 6 54463685 to 54473170 9485 - antisense lncRNA gene predicted gene, 44026
Tssr61076 6 54473154 to 54473174 20 - TSS region transcription start site region 61076
Cpgi17460 6 54485686 to 54485979 293 CpG island CpG island 17460
Scrn1 6 54501173 to 54566489 65316 - protein coding gene secernin 1
Tssr61077 6 54523721 to 54523725 4 - TSS region transcription start site region 61077
Tssr61078 6 54531097 to 54531106 9 - TSS region transcription start site region 61078
Tssr61079 6 54531124 to 54531137 13 - TSS region transcription start site region 61079
Tssr61080 6 54541718 to 54541722 4 - TSS region transcription start site region 61080
Cpgi17461 6 54565736 to 54566504 768 CpG island CpG island 17461
Tssr61081 6 54566278 to 54566281 3 - TSS region transcription start site region 61081
Tssr61082 6 54566283 to 54566296 13 - TSS region transcription start site region 61082
Tssr61083 6 54566326 to 54566413 87 - TSS region transcription start site region 61083
Tssr61084 6 54566446 to 54566453 7 - TSS region transcription start site region 61084
Tssr61085 6 54566460 to 54566483 23 - TSS region transcription start site region 61085
Tssr61086 6 54566484 to 54566491 7 - TSS region transcription start site region 61086
Tssr61087 6 54566499 to 54566508 9 - TSS region transcription start site region 61087
Fkbp14 6 54577602 to 54593698 16096 - protein coding gene FK506 binding protein 14
Tssr61088 6 54593139 to 54593217 78 - TSS region transcription start site region 61088
Cpgi17462 6 54594873 to 54595874 1001 CpG island CpG island 17462
Plekha8 6 54595111 to 54645823 50712 + protein coding gene pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8
Tssr56617 6 54595167 to 54595243 76 + TSS region transcription start site region 56617
Tssr56618 6 54595244 to 54595264 20 + TSS region transcription start site region 56618
Tssr56619 6 54595272 to 54595292 20 + TSS region transcription start site region 56619
Tssr56620 6 54596714 to 54596722 8 + TSS region transcription start site region 56620
Gm34249 6 54659435 to 54662558 3123 + lncRNA gene predicted gene, 34249
Tssr56621 6 54679346 to 54679352 6 + TSS region transcription start site region 56621
Tssr56622 6 54679399 to 54679410 11 + TSS region transcription start site region 56622
Tssr56623 6 54679453 to 54679472 19 + TSS region transcription start site region 56623
Gm28402 6 54680930 to 54681917 987 - antisense lncRNA gene predicted gene 28402
Cpgi17463 6 54681253 to 54682831 1578 CpG island CpG island 17463
Mturn 6 54681624 to 54703851 22227 + protein coding gene maturin, neural progenitor differentiation regulator homolog (Xenopus)
Tssr56624 6 54681687 to 54681783 96 + TSS region transcription start site region 56624
Tssr1853 6 54681786 to 54681793 7 + TSS region transcription start site region 1853
Tssr61089 6 54681927 to 54681939 12 - TSS region transcription start site region 61089
Gm44008 6 54693646 to 54694057 411 + unclassified gene predicted gene, 44008
Cpgi17464 6 54699288 to 54699606 318 CpG island CpG island 17464
Tssr56625 6 54718993 to 54719012 19 + TSS region transcription start site region 56625
Tssr56626 6 54736442 to 54736484 42 + TSS region transcription start site region 56626
Tssr61090 6 54751898 to 54751902 4 - TSS region transcription start site region 61090
Cpgi17465 6 54760113 to 54760274 161 CpG island CpG island 17465
Tssr61091 6 54760228 to 54760237 9 - TSS region transcription start site region 61091
Tssr61092 6 54760246 to 54760273 27 - TSS region transcription start site region 61092
Tssr61093 6 54811740 to 54811759 19 - TSS region transcription start site region 61093
2610209C05Rik 6 54813752 to 54817650 3898 unclassified non-coding RNA gene RIKEN cDNA 2610209C05 gene
Cpgi17466 6 54816274 to 54817682 1408 CpG island CpG island 17466
Tssr56627 6 54816593 to 54816624 31 + TSS region transcription start site region 56627
Tssr56628 6 54816631 to 54816701 70 + TSS region transcription start site region 56628
Tssr56629 6 54816705 to 54816742 37 + TSS region transcription start site region 56629
Tssr56630 6 54816765 to 54816776 11 + TSS region transcription start site region 56630
Tssr56631 6 54816783 to 54816819 36 + TSS region transcription start site region 56631
Tssr56632 6 54816851 to 54816864 13 + TSS region transcription start site region 56632
Tssr56633 6 54816869 to 54816889 20 + TSS region transcription start site region 56633
Tssr56634 6 54816890 to 54816903 13 + TSS region transcription start site region 56634
Tssr56635 6 54816906 to 54816920 14 + TSS region transcription start site region 56635
Znrf2 6 54816916 to 54890224 73308 + protein coding gene zinc and ring finger 2
Tssr61094 6 54816931 to 54816974 43 - TSS region transcription start site region 61094
Tssr56636 6 54817060 to 54817080 20 + TSS region transcription start site region 56636
Tssr56637 6 54817510 to 54817526 16 + TSS region transcription start site region 56637
Tssr61095 6 54817645 to 54817650 5 - TSS region transcription start site region 61095
Tssr56638 6 54824785 to 54824802 17 + TSS region transcription start site region 56638
Tssr56639 6 54833471 to 54833490 19 + TSS region transcription start site region 56639
Tssr56640 6 54848905 to 54848921 16 + TSS region transcription start site region 56640
Tssr56641 6 54849199 to 54849210 11 + TSS region transcription start site region 56641
Tssr56642 6 54855074 to 54855086 12 + TSS region transcription start site region 56642
Tssr56643 6 54866454 to 54866466 12 + TSS region transcription start site region 56643
Tssr61096 6 54867553 to 54867556 3 - TSS region transcription start site region 61096
Tssr56644 6 54878403 to 54878417 14 + TSS region transcription start site region 56644
Tssr56645 6 54888815 to 54888850 35 + TSS region transcription start site region 56645
Tssr56646 6 54889012 to 54889033 21 + TSS region transcription start site region 56646
Tssr56647 6 54897049 to 54897053 4 + TSS region transcription start site region 56647
Gm44185 6 54902422 to 54905728 3306 + unclassified gene predicted gene, 44185
Nod1 6 54923949 to 54972612 48663 - protein coding gene nucleotide-binding oligomerization domain containing 1
Tssr61097 6 54934459 to 54934475 16 - TSS region transcription start site region 61097
Cpgi17467 6 54943218 to 54943393 175 CpG island CpG island 17467
Cpgi17468 6 54943752 to 54944808 1056 CpG island CpG island 17468
Tssr61098 6 54964702 to 54964708 6 - TSS region transcription start site region 61098
Tssr61099 6 54967230 to 54967232 2 - TSS region transcription start site region 61099
Cpgi17469 6 54972223 to 54972739 516 CpG island CpG island 17469
Tssr61100 6 54972396 to 54972424 28 - TSS region transcription start site region 61100
Tssr61101 6 54972428 to 54972466 38 - TSS region transcription start site region 61101
Tssr61102 6 54972560 to 54972583 23 - TSS region transcription start site region 61102
Tssr61103 6 54972603 to 54972626 23 - TSS region transcription start site region 61103
Tssr61104 6 54972628 to 54972643 15 - TSS region transcription start site region 61104
Gm24230 6 54974651 to 54974779 128 + snoRNA gene predicted gene, 24230
Ggct 6 54985095 to 54992961 7866 - protein coding gene gamma-glutamyl cyclotransferase
Cpgi17470 6 54992439 to 54993348 909 CpG island CpG island 17470
Tssr61105 6 54992858 to 54992878 20 - TSS region transcription start site region 61105
Tssr61106 6 54992882 to 54992907 25 - TSS region transcription start site region 61106
Tssr61107 6 54992910 to 54992921 11 - TSS region transcription start site region 61107
Tssr61108 6 54992925 to 54992936 11 - TSS region transcription start site region 61108
Tssr61109 6 54992946 to 54992957 11 - TSS region transcription start site region 61109
Gm38539 6 55002120 to 55003998 1878 + lncRNA gene predicted gene, 38539
Cpgi17471 6 55037487 to 55038597 1110 CpG island CpG island 17471
Tssr56648 6 55037955 to 55037980 25 + TSS region transcription start site region 56648
Tssr56649 6 55037988 to 55038091 103 + TSS region transcription start site region 56649
Gars 6 55038007 to 55079500 41493 + protein coding gene glycyl-tRNA synthetase
Crhr2 6 55090049 to 55133016 42967 - protein coding gene corticotropin releasing hormone receptor 2
Cpgi17472 6 55117258 to 55118336 1078 CpG island CpG island 17472
Tssr61110 6 55132958 to 55132973 15 - TSS region transcription start site region 61110
Tssr61111 6 55132975 to 55132997 22 - TSS region transcription start site region 61111
Tssr61112 6 55133015 to 55133029 14 - TSS region transcription start site region 61112
Tssr1854 6 55154436 to 55154463 27 + TSS region transcription start site region 1854
Gm34358 6 55154459 to 55167210 12751 + lincRNA gene predicted gene, 34358
Inmt 6 55170627 to 55174990 4363 - protein coding gene indolethylamine N-methyltransferase
Tssr61113 6 55173474 to 55173485 11 - TSS region transcription start site region 61113
Tssr61114 6 55173927 to 55173970 43 - TSS region transcription start site region 61114
Tssr61115 6 55175019 to 55175036 17 - TSS region transcription start site region 61115
D6Mit384 6 55199866 to 55199990 124 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 384
Cpgi17473 6 55203247 to 55203609 362 CpG island CpG island 17473
Tssr56650 6 55203381 to 55203459 78 + TSS region transcription start site region 56650
Mindy4 6 55203383 to 55320222 116839 + protein coding gene MINDY lysine 48 deubiquitinase 4
Tssr56651 6 55203460 to 55203496 36 + TSS region transcription start site region 56651