Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:53784746-54294761

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55 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tril 6 53815468 to 53820825 5357 - protein coding gene TLR4 interactor with leucine-rich repeats
Cpgi17455 6 53817509 to 53821134 3625 CpG island CpG island 17455
Tssr61057 6 53820449 to 53820473 24 - TSS region transcription start site region 61057
Tssr61058 6 53820476 to 53820506 30 - TSS region transcription start site region 61058
Tssr61059 6 53820509 to 53820526 17 - TSS region transcription start site region 61059
Tssr61060 6 53820563 to 53820578 15 - TSS region transcription start site region 61060
Tssr61061 6 53820715 to 53820747 32 - TSS region transcription start site region 61061
Tssr61062 6 53820749 to 53820758 9 - TSS region transcription start site region 61062
Tssr61063 6 53820764 to 53820837 73 - TSS region transcription start site region 61063
Tssr61064 6 53820848 to 53820859 11 - TSS region transcription start site region 61064
Tssr61065 6 53820902 to 53820913 11 - TSS region transcription start site region 61065
Tssr61066 6 53820944 to 53820955 11 - TSS region transcription start site region 61066
Tssr61067 6 53821224 to 53821259 35 - TSS region transcription start site region 61067
4930566K11Rik 6 53844169 to 53845055 886 unclassified gene RIKEN cDNA 4930566K11 gene
Cpgi17456 6 53844783 to 53845054 271 CpG island CpG island 17456
Gm16499 6 53844899 to 53858947 14048 + lincRNA gene predicted gene 16499
Gm22910 6 53872017 to 53872148 131 - snoRNA gene predicted gene, 22910
Cpvl 6 53873279 to 53978671 105392 - protein coding gene carboxypeptidase, vitellogenic-like
Gm33716 6 53880763 to 53883101 2338 + lncRNA gene predicted gene, 33716
4921529L05Rik 6 53978691 to 54017383 38692 + lncRNA gene RIKEN cDNA 4921529L05 gene
Tssr56578 6 53978696 to 53978715 19 + TSS region transcription start site region 56578
Tssr56579 6 53978722 to 53978730 8 + TSS region transcription start site region 56579
Cpgi17457 6 54038977 to 54040670 1693 CpG island CpG island 17457
Tssr56580 6 54039497 to 54039556 59 + TSS region transcription start site region 56580
Tssr56581 6 54039558 to 54039575 17 + TSS region transcription start site region 56581
Tssr56582 6 54039590 to 54039605 15 + TSS region transcription start site region 56582
Tssr56583 6 54039646 to 54039695 49 + TSS region transcription start site region 56583
Tssr56584 6 54039709 to 54039733 24 + TSS region transcription start site region 56584
Tssr56585 6 54039746 to 54039761 15 + TSS region transcription start site region 56585
Tssr61068 6 54039888 to 54039892 4 - TSS region transcription start site region 61068
Chn2 6 54039932 to 54301812 261880 + protein coding gene chimerin 2
Tssr56586 6 54039935 to 54040016 81 + TSS region transcription start site region 56586
Tssr56587 6 54040078 to 54040091 13 + TSS region transcription start site region 56587
Tssr56588 6 54041378 to 54041382 4 + TSS region transcription start site region 56588
9530036M11Rik 6 54146887 to 54150937 4050 - antisense lncRNA gene RIKEN cDNA 9530036M11 gene
Tssr61069 6 54151032 to 54151052 20 - TSS region transcription start site region 61069
Tssr61070 6 54158599 to 54158615 16 - TSS region transcription start site region 61070
Gm15526 6 54177480 to 54177683 203 - pseudogene predicted gene 15526
Tssr61071 6 54241893 to 54241912 19 - TSS region transcription start site region 61071
Gm15527 6 54245742 to 54279076 33334 - unclassified non-coding RNA gene predicted gene 15527
Tssr56589 6 54264801 to 54264837 36 + TSS region transcription start site region 56589
Tssr56590 6 54264839 to 54264863 24 + TSS region transcription start site region 56590
Tssr56591 6 54267135 to 54267145 10 + TSS region transcription start site region 56591
Tssr56592 6 54267151 to 54267180 29 + TSS region transcription start site region 56592
Tssr56593 6 54267189 to 54267191 2 + TSS region transcription start site region 56593
Tssr56594 6 54269135 to 54269161 26 + TSS region transcription start site region 56594
Tssr56595 6 54269165 to 54269172 7 + TSS region transcription start site region 56595
9130019P16Rik 6 54269681 to 54430221 160540 - lncRNA gene RIKEN cDNA 9130019P16 gene
Tssr56596 6 54272766 to 54272777 11 + TSS region transcription start site region 56596
Tssr56597 6 54272785 to 54272804 19 + TSS region transcription start site region 56597
Tssr56598 6 54272806 to 54272854 48 + TSS region transcription start site region 56598
Tssr61072 6 54279069 to 54279082 13 - TSS region transcription start site region 61072
Tssr61073 6 54292742 to 54292744 2 - TSS region transcription start site region 61073
Tssr56599 6 54292899 to 54292909 10 + TSS region transcription start site region 56599
Tssr56600 6 54293064 to 54293075 11 + TSS region transcription start site region 56600