Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:53259899-54443947

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137 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D6Mit184 6 53260728 to 53260856 128 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 184
Gm33348 6 53262475 to 53268233 5758 - lncRNA gene predicted gene, 33348
Cpgi17452 6 53286560 to 53286777 217 CpG island CpG island 17452
Cpgi17453 6 53286826 to 53288392 1566 CpG island CpG island 17453
Creb5 6 53287270 to 53700376 413106 + protein coding gene cAMP responsive element binding protein 5
Tssr56545 6 53287293 to 53287310 17 + TSS region transcription start site region 56545
Tssr56546 6 53287311 to 53287324 13 + TSS region transcription start site region 56546
Tssr56547 6 53287329 to 53287342 13 + TSS region transcription start site region 56547
Tssr56548 6 53287360 to 53287365 5 + TSS region transcription start site region 56548
Aliq4 6 53296347 to 53296450 103 QTL acute lung injury QTL 4
D6Mit183 6 53296347 to 53296450 103 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 183
Tssr56549 6 53433969 to 53433982 13 + TSS region transcription start site region 56549
Gm25818 6 53433974 to 53434137 163 + snRNA gene predicted gene, 25818
Tssr56550 6 53446133 to 53446140 7 + TSS region transcription start site region 56550
Tssr56551 6 53448985 to 53448987 2 + TSS region transcription start site region 56551
Tssr61052 6 53452530 to 53452538 8 - TSS region transcription start site region 61052
Tssr1851 6 53452911 to 53452928 17 - TSS region transcription start site region 1851
Gm38815 6 53469512 to 53471753 2241 - lncRNA gene predicted gene, 38815
Tssr1852 6 53469538 to 53469540 2 + TSS region transcription start site region 1852
D6Dcr10 6 53471471 to 53471602 131 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 10
Bsbob3 6 53471471 to 53471591 120 QTL BSB obesity 3
D6Mit355 6 53471471 to 53471591 120 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 355
Gm38814 6 53493537 to 53498278 4741 + lncRNA gene predicted gene, 38814
Tssr56552 6 53503853 to 53503854 1 + TSS region transcription start site region 56552
Mdq10 6 53531201 to 53531201 0 QTL mammary ductal QTL 10
Tssr61053 6 53563918 to 53563938 20 - TSS region transcription start site region 61053
Tssr56553 6 53573338 to 53573349 11 + TSS region transcription start site region 56553
Tssr56554 6 53573352 to 53573359 7 + TSS region transcription start site region 56554
Tssr56555 6 53573364 to 53573394 30 + TSS region transcription start site region 56555
Tssr56556 6 53573655 to 53573659 4 + TSS region transcription start site region 56556
Tssr56557 6 53576316 to 53576320 4 + TSS region transcription start site region 56557
Gm33392 6 53581351 to 53592876 11525 - lncRNA gene predicted gene, 33392
Tssr61054 6 53592318 to 53592329 11 - TSS region transcription start site region 61054
Tssr56558 6 53592976 to 53592982 6 + TSS region transcription start site region 56558
Tssr56559 6 53604531 to 53604546 15 + TSS region transcription start site region 56559
Tssr56560 6 53610464 to 53610477 13 + TSS region transcription start site region 56560
Tssr56561 6 53619903 to 53619941 38 + TSS region transcription start site region 56561
Tssr56562 6 53620453 to 53620472 19 + TSS region transcription start site region 56562
Tssr56563 6 53620530 to 53620566 36 + TSS region transcription start site region 56563
Tssr56564 6 53621199 to 53621206 7 + TSS region transcription start site region 56564
Tssr56565 6 53629739 to 53629763 24 + TSS region transcription start site region 56565
Tssr56566 6 53629783 to 53629796 13 + TSS region transcription start site region 56566
Tssr56567 6 53629931 to 53629961 30 + TSS region transcription start site region 56567
Tssr56568 6 53644388 to 53644394 6 + TSS region transcription start site region 56568
Gm44080 6 53667770 to 53669983 2213 + unclassified gene predicted gene, 44080
Tssr56569 6 53680935 to 53680958 23 + TSS region transcription start site region 56569
Tssr56570 6 53680978 to 53680989 11 + TSS region transcription start site region 56570
Tssr56571 6 53681013 to 53681060 47 + TSS region transcription start site region 56571
Tssr56572 6 53681074 to 53681110 36 + TSS region transcription start site region 56572
Tssr61055 6 53681078 to 53681094 16 - TSS region transcription start site region 61055
Tssr56573 6 53681112 to 53681143 31 + TSS region transcription start site region 56573
Tssr56574 6 53698000 to 53698015 15 + TSS region transcription start site region 56574
Tssr56575 6 53698024 to 53698036 12 + TSS region transcription start site region 56575
Tssr56576 6 53698066 to 53698069 3 + TSS region transcription start site region 56576
Tssr56577 6 53698098 to 53698101 3 + TSS region transcription start site region 56577
Tssr61056 6 53710715 to 53710746 31 - TSS region transcription start site region 61056
Cpgi17454 6 53713349 to 53713530 181 CpG island CpG island 17454
Hrtr1 6 53764478 to 53764478 0 QTL heart rate 1
Gm5306 6 53777384 to 53778140 756 + pseudogene predicted gene 5306
Tril 6 53815468 to 53820825 5357 - protein coding gene TLR4 interactor with leucine-rich repeats
Cpgi17455 6 53817509 to 53821134 3625 CpG island CpG island 17455
Tssr61057 6 53820449 to 53820473 24 - TSS region transcription start site region 61057
Tssr61058 6 53820476 to 53820506 30 - TSS region transcription start site region 61058
Tssr61059 6 53820509 to 53820526 17 - TSS region transcription start site region 61059
Tssr61060 6 53820563 to 53820578 15 - TSS region transcription start site region 61060
Tssr61061 6 53820715 to 53820747 32 - TSS region transcription start site region 61061
Tssr61062 6 53820749 to 53820758 9 - TSS region transcription start site region 61062
Tssr61063 6 53820764 to 53820837 73 - TSS region transcription start site region 61063
Tssr61064 6 53820848 to 53820859 11 - TSS region transcription start site region 61064
Tssr61065 6 53820902 to 53820913 11 - TSS region transcription start site region 61065
Tssr61066 6 53820944 to 53820955 11 - TSS region transcription start site region 61066
Tssr61067 6 53821224 to 53821259 35 - TSS region transcription start site region 61067
4930566K11Rik 6 53844169 to 53845055 886 unclassified gene RIKEN cDNA 4930566K11 gene
Cpgi17456 6 53844783 to 53845054 271 CpG island CpG island 17456
Gm16499 6 53844899 to 53858947 14048 + lincRNA gene predicted gene 16499
Gm22910 6 53872017 to 53872148 131 - snoRNA gene predicted gene, 22910
Cpvl 6 53873279 to 53978671 105392 - protein coding gene carboxypeptidase, vitellogenic-like
Gm33716 6 53880763 to 53883101 2338 + lncRNA gene predicted gene, 33716
4921529L05Rik 6 53978691 to 54017383 38692 + lncRNA gene RIKEN cDNA 4921529L05 gene
Tssr56578 6 53978696 to 53978715 19 + TSS region transcription start site region 56578
Tssr56579 6 53978722 to 53978730 8 + TSS region transcription start site region 56579
Cpgi17457 6 54038977 to 54040670 1693 CpG island CpG island 17457
Tssr56580 6 54039497 to 54039556 59 + TSS region transcription start site region 56580
Tssr56581 6 54039558 to 54039575 17 + TSS region transcription start site region 56581
Tssr56582 6 54039590 to 54039605 15 + TSS region transcription start site region 56582
Tssr56583 6 54039646 to 54039695 49 + TSS region transcription start site region 56583
Tssr56584 6 54039709 to 54039733 24 + TSS region transcription start site region 56584
Tssr56585 6 54039746 to 54039761 15 + TSS region transcription start site region 56585
Tssr61068 6 54039888 to 54039892 4 - TSS region transcription start site region 61068
Chn2 6 54039932 to 54301812 261880 + protein coding gene chimerin 2
Tssr56586 6 54039935 to 54040016 81 + TSS region transcription start site region 56586
Tssr56587 6 54040078 to 54040091 13 + TSS region transcription start site region 56587
Tssr56588 6 54041378 to 54041382 4 + TSS region transcription start site region 56588
9530036M11Rik 6 54146887 to 54150937 4050 - antisense lncRNA gene RIKEN cDNA 9530036M11 gene
Tssr61069 6 54151032 to 54151052 20 - TSS region transcription start site region 61069
Tssr61070 6 54158599 to 54158615 16 - TSS region transcription start site region 61070
Gm15526 6 54177480 to 54177683 203 - pseudogene predicted gene 15526
Tssr61071 6 54241893 to 54241912 19 - TSS region transcription start site region 61071
Gm15527 6 54245742 to 54279076 33334 - unclassified non-coding RNA gene predicted gene 15527
Tssr56589 6 54264801 to 54264837 36 + TSS region transcription start site region 56589
Tssr56590 6 54264839 to 54264863 24 + TSS region transcription start site region 56590
Tssr56591 6 54267135 to 54267145 10 + TSS region transcription start site region 56591
Tssr56592 6 54267151 to 54267180 29 + TSS region transcription start site region 56592
Tssr56593 6 54267189 to 54267191 2 + TSS region transcription start site region 56593
Tssr56594 6 54269135 to 54269161 26 + TSS region transcription start site region 56594
Tssr56595 6 54269165 to 54269172 7 + TSS region transcription start site region 56595
9130019P16Rik 6 54269681 to 54430221 160540 - lncRNA gene RIKEN cDNA 9130019P16 gene
Tssr56596 6 54272766 to 54272777 11 + TSS region transcription start site region 56596
Tssr56597 6 54272785 to 54272804 19 + TSS region transcription start site region 56597
Tssr56598 6 54272806 to 54272854 48 + TSS region transcription start site region 56598
Tssr61072 6 54279069 to 54279082 13 - TSS region transcription start site region 61072
Tssr61073 6 54292742 to 54292744 2 - TSS region transcription start site region 61073
Tssr56599 6 54292899 to 54292909 10 + TSS region transcription start site region 56599
Tssr56600 6 54293064 to 54293075 11 + TSS region transcription start site region 56600
Tssr56601 6 54300133 to 54300162 29 + TSS region transcription start site region 56601
Tssr56602 6 54314067 to 54314075 8 + TSS region transcription start site region 56602
9030405F24Rik 6 54325834 to 54328124 2290 unclassified gene RIKEN cDNA 9030405F24 gene
Cpgi17458 6 54326667 to 54328027 1360 CpG island CpG island 17458
Tssr56603 6 54326828 to 54326845 17 + TSS region transcription start site region 56603
Tssr56604 6 54326852 to 54326888 36 + TSS region transcription start site region 56604
Tssr56605 6 54326891 to 54326914 23 + TSS region transcription start site region 56605
Tssr56606 6 54326955 to 54326978 23 + TSS region transcription start site region 56606
Tssr56607 6 54326984 to 54326989 5 + TSS region transcription start site region 56607
Prr15 6 54327012 to 54330200 3188 + protein coding gene proline rich 15
Gm34169 6 54329638 to 54343436 13798 + pseudogene predicted gene, 34169
Tssr56608 6 54329838 to 54329843 5 + TSS region transcription start site region 56608
Tssr61074 6 54337236 to 54337242 6 - TSS region transcription start site region 61074
D6Mit185 6 54367571 to 54367715 144 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 185
Tssr61075 6 54409316 to 54409343 27 - TSS region transcription start site region 61075
Cpgi17459 6 54429084 to 54430203 1119 CpG island CpG island 17459
Tssr56609 6 54429544 to 54429547 3 + TSS region transcription start site region 56609
Wipf3 6 54429603 to 54503768 74165 + protein coding gene WAS/WASL interacting protein family, member 3
Tssr56610 6 54429632 to 54429649 17 + TSS region transcription start site region 56610
Tssr56611 6 54429653 to 54429664 11 + TSS region transcription start site region 56611
Tssr56612 6 54429678 to 54429694 16 + TSS region transcription start site region 56612
Tssr56613 6 54431482 to 54431489 7 + TSS region transcription start site region 56613
Tssr56614 6 54440515 to 54440518 3 + TSS region transcription start site region 56614