Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:53062360-53512365

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31 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Jazf1 6 52768797 to 53068631 299834 - protein coding gene JAZF zinc finger 1
Gm33097 6 53060089 to 53065948 5859 - lncRNA gene predicted gene, 33097
Cpgi17451 6 53067466 to 53069061 1595 CpG island CpG island 17451
Tssr61050 6 53068562 to 53068656 94 - TSS region transcription start site region 61050
Tssr61051 6 53068706 to 53068765 59 - TSS region transcription start site region 61051
Gm8143 6 53170550 to 53171735 1185 - pseudogene predicted gene 8143
Gm4872 6 53221164 to 53224975 3811 + lincRNA gene predicted gene 4872
D6Mit184 6 53260728 to 53260856 128 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 184
Gm33348 6 53262475 to 53268233 5758 - lncRNA gene predicted gene, 33348
Cpgi17452 6 53286560 to 53286777 217 CpG island CpG island 17452
Cpgi17453 6 53286826 to 53288392 1566 CpG island CpG island 17453
Creb5 6 53287270 to 53700376 413106 + protein coding gene cAMP responsive element binding protein 5
Tssr56545 6 53287293 to 53287310 17 + TSS region transcription start site region 56545
Tssr56546 6 53287311 to 53287324 13 + TSS region transcription start site region 56546
Tssr56547 6 53287329 to 53287342 13 + TSS region transcription start site region 56547
Tssr56548 6 53287360 to 53287365 5 + TSS region transcription start site region 56548
Aliq4 6 53296347 to 53296450 103 QTL acute lung injury QTL 4
D6Mit183 6 53296347 to 53296450 103 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 183
Tssr56549 6 53433969 to 53433982 13 + TSS region transcription start site region 56549
Gm25818 6 53433974 to 53434137 163 + snRNA gene predicted gene, 25818
Tssr56550 6 53446133 to 53446140 7 + TSS region transcription start site region 56550
Tssr56551 6 53448985 to 53448987 2 + TSS region transcription start site region 56551
Tssr61052 6 53452530 to 53452538 8 - TSS region transcription start site region 61052
Tssr1851 6 53452911 to 53452928 17 - TSS region transcription start site region 1851
Gm38815 6 53469512 to 53471753 2241 - lncRNA gene predicted gene, 38815
Tssr1852 6 53469538 to 53469540 2 + TSS region transcription start site region 1852
D6Dcr10 6 53471471 to 53471602 131 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 10
Bsbob3 6 53471471 to 53471591 120 QTL BSB obesity 3
D6Mit355 6 53471471 to 53471591 120 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 355
Gm38814 6 53493537 to 53498278 4741 + lncRNA gene predicted gene, 38814
Tssr56552 6 53503853 to 53503854 1 + TSS region transcription start site region 56552