Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:52730550-53611735

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64 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tax1bp1 6 52713729 to 52766780 53051 + protein coding gene Tax1 (human T cell leukemia virus type I) binding protein 1
Tssr56538 6 52733184 to 52733199 15 + TSS region transcription start site region 56538
Tssr56539 6 52737077 to 52737111 34 + TSS region transcription start site region 56539
Tssr56540 6 52745695 to 52745698 3 + TSS region transcription start site region 56540
Jazf1 6 52768797 to 53068631 299834 - protein coding gene JAZF zinc finger 1
Tssr56541 6 52776133 to 52776145 12 + TSS region transcription start site region 56541
Tssr56542 6 52825840 to 52825859 19 + TSS region transcription start site region 56542
Gm15572 6 52843109 to 52843701 592 - pseudogene predicted gene 15572
Tssr61044 6 52866312 to 52866333 21 - TSS region transcription start site region 61044
Tssr1849 6 52866493 to 52866503 10 + TSS region transcription start site region 1849
Tssr1850 6 52902680 to 52902688 8 + TSS region transcription start site region 1850
Tssr56543 6 52903791 to 52903828 37 + TSS region transcription start site region 56543
Tssr61045 6 52909559 to 52909574 15 - TSS region transcription start site region 61045
Tssr61046 6 52909581 to 52909609 28 - TSS region transcription start site region 61046
Tssr61047 6 52909618 to 52909621 3 - TSS region transcription start site region 61047
Tssr61048 6 52909631 to 52909644 13 - TSS region transcription start site region 61048
Tssr56544 6 52912661 to 52912671 10 + TSS region transcription start site region 56544
D6Ertd234e 6 52953621 to 52953869 248 DNA segment DNA segment, Chr 6, ERATO Doi 234, expressed
Tssr61049 6 52961723 to 52961739 16 - TSS region transcription start site region 61049
Gm33219 6 52965158 to 52976556 11398 - lncRNA gene predicted gene, 33219
Gm26215 6 53010394 to 53010532 138 - snoRNA gene predicted gene, 26215
Gm15573 6 53045884 to 53046423 539 + pseudogene predicted gene 15573
Gm33097 6 53060089 to 53065948 5859 - lncRNA gene predicted gene, 33097
Cpgi17451 6 53067466 to 53069061 1595 CpG island CpG island 17451
Tssr61050 6 53068562 to 53068656 94 - TSS region transcription start site region 61050
Tssr61051 6 53068706 to 53068765 59 - TSS region transcription start site region 61051
Gm8143 6 53170550 to 53171735 1185 - pseudogene predicted gene 8143
Gm4872 6 53221164 to 53224975 3811 + lincRNA gene predicted gene 4872
D6Mit184 6 53260728 to 53260856 128 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 184
Gm33348 6 53262475 to 53268233 5758 - lncRNA gene predicted gene, 33348
Cpgi17452 6 53286560 to 53286777 217 CpG island CpG island 17452
Cpgi17453 6 53286826 to 53288392 1566 CpG island CpG island 17453
Creb5 6 53287270 to 53700376 413106 + protein coding gene cAMP responsive element binding protein 5
Tssr56545 6 53287293 to 53287310 17 + TSS region transcription start site region 56545
Tssr56546 6 53287311 to 53287324 13 + TSS region transcription start site region 56546
Tssr56547 6 53287329 to 53287342 13 + TSS region transcription start site region 56547
Tssr56548 6 53287360 to 53287365 5 + TSS region transcription start site region 56548
Aliq4 6 53296347 to 53296450 103 QTL acute lung injury QTL 4
D6Mit183 6 53296347 to 53296450 103 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 183
Tssr56549 6 53433969 to 53433982 13 + TSS region transcription start site region 56549
Gm25818 6 53433974 to 53434137 163 + snRNA gene predicted gene, 25818
Tssr56550 6 53446133 to 53446140 7 + TSS region transcription start site region 56550
Tssr56551 6 53448985 to 53448987 2 + TSS region transcription start site region 56551
Tssr61052 6 53452530 to 53452538 8 - TSS region transcription start site region 61052
Tssr1851 6 53452911 to 53452928 17 - TSS region transcription start site region 1851
Gm38815 6 53469512 to 53471753 2241 - lncRNA gene predicted gene, 38815
Tssr1852 6 53469538 to 53469540 2 + TSS region transcription start site region 1852
D6Mit355 6 53471471 to 53471591 120 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 355
D6Dcr10 6 53471471 to 53471602 131 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 10
Bsbob3 6 53471471 to 53471591 120 QTL BSB obesity 3
Gm38814 6 53493537 to 53498278 4741 + lncRNA gene predicted gene, 38814
Tssr56552 6 53503853 to 53503854 1 + TSS region transcription start site region 56552
Mdq10 6 53531201 to 53531201 0 QTL mammary ductal QTL 10
Tssr61053 6 53563918 to 53563938 20 - TSS region transcription start site region 61053
Tssr56553 6 53573338 to 53573349 11 + TSS region transcription start site region 56553
Tssr56554 6 53573352 to 53573359 7 + TSS region transcription start site region 56554
Tssr56555 6 53573364 to 53573394 30 + TSS region transcription start site region 56555
Tssr56556 6 53573655 to 53573659 4 + TSS region transcription start site region 56556
Tssr56557 6 53576316 to 53576320 4 + TSS region transcription start site region 56557
Gm33392 6 53581351 to 53592876 11525 - lncRNA gene predicted gene, 33392
Tssr61054 6 53592318 to 53592329 11 - TSS region transcription start site region 61054
Tssr56558 6 53592976 to 53592982 6 + TSS region transcription start site region 56558
Tssr56559 6 53604531 to 53604546 15 + TSS region transcription start site region 56559
Tssr56560 6 53610464 to 53610477 13 + TSS region transcription start site region 56560