Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:52646471-54296591

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159 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm43966 6 52713344 to 52713955 611 - unclassified gene predicted gene, 43966
Cpgi17450 6 52713593 to 52714588 995 CpG island CpG island 17450
Tssr61041 6 52713617 to 52713626 9 - TSS region transcription start site region 61041
Tssr61042 6 52713627 to 52713639 12 - TSS region transcription start site region 61042
Tax1bp1 6 52713729 to 52766780 53051 + protein coding gene Tax1 (human T cell leukemia virus type I) binding protein 1
Tssr56527 6 52713731 to 52713800 69 + TSS region transcription start site region 56527
Tssr56528 6 52714003 to 52714049 46 + TSS region transcription start site region 56528
Tssr56529 6 52714050 to 52714078 28 + TSS region transcription start site region 56529
Tssr61043 6 52714330 to 52714349 19 - TSS region transcription start site region 61043
Tssr56530 6 52714412 to 52714440 28 + TSS region transcription start site region 56530
Tssr56531 6 52714445 to 52714467 22 + TSS region transcription start site region 56531
Tssr56532 6 52720319 to 52720324 5 + TSS region transcription start site region 56532
Tssr56533 6 52721366 to 52721379 13 + TSS region transcription start site region 56533
Tssr56534 6 52721394 to 52721428 34 + TSS region transcription start site region 56534
Gm43967 6 52722630 to 52722930 300 - pseudogene predicted gene, 43967
Tssr56535 6 52727192 to 52727230 38 + TSS region transcription start site region 56535
Tssr56536 6 52729331 to 52729370 39 + TSS region transcription start site region 56536
Tssr56537 6 52729412 to 52729445 33 + TSS region transcription start site region 56537
Tssr56538 6 52733184 to 52733199 15 + TSS region transcription start site region 56538
Tssr56539 6 52737077 to 52737111 34 + TSS region transcription start site region 56539
Tssr56540 6 52745695 to 52745698 3 + TSS region transcription start site region 56540
Jazf1 6 52768797 to 53068631 299834 - protein coding gene JAZF zinc finger 1
Tssr56541 6 52776133 to 52776145 12 + TSS region transcription start site region 56541
Tssr56542 6 52825840 to 52825859 19 + TSS region transcription start site region 56542
Gm15572 6 52843109 to 52843701 592 - pseudogene predicted gene 15572
Tssr61044 6 52866312 to 52866333 21 - TSS region transcription start site region 61044
Tssr1849 6 52866493 to 52866503 10 + TSS region transcription start site region 1849
Tssr1850 6 52902680 to 52902688 8 + TSS region transcription start site region 1850
Tssr56543 6 52903791 to 52903828 37 + TSS region transcription start site region 56543
Tssr61045 6 52909559 to 52909574 15 - TSS region transcription start site region 61045
Tssr61046 6 52909581 to 52909609 28 - TSS region transcription start site region 61046
Tssr61047 6 52909618 to 52909621 3 - TSS region transcription start site region 61047
Tssr61048 6 52909631 to 52909644 13 - TSS region transcription start site region 61048
Tssr56544 6 52912661 to 52912671 10 + TSS region transcription start site region 56544
D6Ertd234e 6 52953621 to 52953869 248 DNA segment DNA segment, Chr 6, ERATO Doi 234, expressed
Tssr61049 6 52961723 to 52961739 16 - TSS region transcription start site region 61049
Gm33219 6 52965158 to 52976556 11398 - lncRNA gene predicted gene, 33219
Gm26215 6 53010394 to 53010532 138 - snoRNA gene predicted gene, 26215
Gm15573 6 53045884 to 53046423 539 + pseudogene predicted gene 15573
Gm33097 6 53060089 to 53065948 5859 - lncRNA gene predicted gene, 33097
Cpgi17451 6 53067466 to 53069061 1595 CpG island CpG island 17451
Tssr61050 6 53068562 to 53068656 94 - TSS region transcription start site region 61050
Tssr61051 6 53068706 to 53068765 59 - TSS region transcription start site region 61051
Gm8143 6 53170550 to 53171735 1185 - pseudogene predicted gene 8143
Gm4872 6 53221164 to 53224975 3811 + lincRNA gene predicted gene 4872
D6Mit184 6 53260728 to 53260856 128 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 184
Gm33348 6 53262475 to 53268233 5758 - lncRNA gene predicted gene, 33348
Cpgi17452 6 53286560 to 53286777 217 CpG island CpG island 17452
Cpgi17453 6 53286826 to 53288392 1566 CpG island CpG island 17453
Creb5 6 53287270 to 53700376 413106 + protein coding gene cAMP responsive element binding protein 5
Tssr56545 6 53287293 to 53287310 17 + TSS region transcription start site region 56545
Tssr56546 6 53287311 to 53287324 13 + TSS region transcription start site region 56546
Tssr56547 6 53287329 to 53287342 13 + TSS region transcription start site region 56547
Tssr56548 6 53287360 to 53287365 5 + TSS region transcription start site region 56548
D6Mit183 6 53296347 to 53296450 103 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 183
Aliq4 6 53296347 to 53296450 103 QTL acute lung injury QTL 4
Tssr56549 6 53433969 to 53433982 13 + TSS region transcription start site region 56549
Gm25818 6 53433974 to 53434137 163 + snRNA gene predicted gene, 25818
Tssr56550 6 53446133 to 53446140 7 + TSS region transcription start site region 56550
Tssr56551 6 53448985 to 53448987 2 + TSS region transcription start site region 56551
Tssr61052 6 53452530 to 53452538 8 - TSS region transcription start site region 61052
Tssr1851 6 53452911 to 53452928 17 - TSS region transcription start site region 1851
Gm38815 6 53469512 to 53471753 2241 - lncRNA gene predicted gene, 38815
Tssr1852 6 53469538 to 53469540 2 + TSS region transcription start site region 1852
D6Mit355 6 53471471 to 53471591 120 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 355
D6Dcr10 6 53471471 to 53471602 131 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 10
Bsbob3 6 53471471 to 53471591 120 QTL BSB obesity 3
Gm38814 6 53493537 to 53498278 4741 + lncRNA gene predicted gene, 38814
Tssr56552 6 53503853 to 53503854 1 + TSS region transcription start site region 56552
Mdq10 6 53531201 to 53531201 0 QTL mammary ductal QTL 10
Tssr61053 6 53563918 to 53563938 20 - TSS region transcription start site region 61053
Tssr56553 6 53573338 to 53573349 11 + TSS region transcription start site region 56553
Tssr56554 6 53573352 to 53573359 7 + TSS region transcription start site region 56554
Tssr56555 6 53573364 to 53573394 30 + TSS region transcription start site region 56555
Tssr56556 6 53573655 to 53573659 4 + TSS region transcription start site region 56556
Tssr56557 6 53576316 to 53576320 4 + TSS region transcription start site region 56557
Gm33392 6 53581351 to 53592876 11525 - lncRNA gene predicted gene, 33392
Tssr61054 6 53592318 to 53592329 11 - TSS region transcription start site region 61054
Tssr56558 6 53592976 to 53592982 6 + TSS region transcription start site region 56558
Tssr56559 6 53604531 to 53604546 15 + TSS region transcription start site region 56559
Tssr56560 6 53610464 to 53610477 13 + TSS region transcription start site region 56560
Tssr56561 6 53619903 to 53619941 38 + TSS region transcription start site region 56561
Tssr56562 6 53620453 to 53620472 19 + TSS region transcription start site region 56562
Tssr56563 6 53620530 to 53620566 36 + TSS region transcription start site region 56563
Tssr56564 6 53621199 to 53621206 7 + TSS region transcription start site region 56564
Tssr56565 6 53629739 to 53629763 24 + TSS region transcription start site region 56565
Tssr56566 6 53629783 to 53629796 13 + TSS region transcription start site region 56566
Tssr56567 6 53629931 to 53629961 30 + TSS region transcription start site region 56567
Tssr56568 6 53644388 to 53644394 6 + TSS region transcription start site region 56568
Gm44080 6 53667770 to 53669983 2213 + unclassified gene predicted gene, 44080
Tssr56569 6 53680935 to 53680958 23 + TSS region transcription start site region 56569
Tssr56570 6 53680978 to 53680989 11 + TSS region transcription start site region 56570
Tssr56571 6 53681013 to 53681060 47 + TSS region transcription start site region 56571
Tssr56572 6 53681074 to 53681110 36 + TSS region transcription start site region 56572
Tssr61055 6 53681078 to 53681094 16 - TSS region transcription start site region 61055
Tssr56573 6 53681112 to 53681143 31 + TSS region transcription start site region 56573
Tssr56574 6 53698000 to 53698015 15 + TSS region transcription start site region 56574
Tssr56575 6 53698024 to 53698036 12 + TSS region transcription start site region 56575
Tssr56576 6 53698066 to 53698069 3 + TSS region transcription start site region 56576
Tssr56577 6 53698098 to 53698101 3 + TSS region transcription start site region 56577
Tssr61056 6 53710715 to 53710746 31 - TSS region transcription start site region 61056
Cpgi17454 6 53713349 to 53713530 181 CpG island CpG island 17454
Hrtr1 6 53764478 to 53764478 0 QTL heart rate 1
Gm5306 6 53777384 to 53778140 756 + pseudogene predicted gene 5306
Tril 6 53815468 to 53820825 5357 - protein coding gene TLR4 interactor with leucine-rich repeats
Cpgi17455 6 53817509 to 53821134 3625 CpG island CpG island 17455
Tssr61057 6 53820449 to 53820473 24 - TSS region transcription start site region 61057
Tssr61058 6 53820476 to 53820506 30 - TSS region transcription start site region 61058
Tssr61059 6 53820509 to 53820526 17 - TSS region transcription start site region 61059
Tssr61060 6 53820563 to 53820578 15 - TSS region transcription start site region 61060
Tssr61061 6 53820715 to 53820747 32 - TSS region transcription start site region 61061
Tssr61062 6 53820749 to 53820758 9 - TSS region transcription start site region 61062
Tssr61063 6 53820764 to 53820837 73 - TSS region transcription start site region 61063
Tssr61064 6 53820848 to 53820859 11 - TSS region transcription start site region 61064
Tssr61065 6 53820902 to 53820913 11 - TSS region transcription start site region 61065
Tssr61066 6 53820944 to 53820955 11 - TSS region transcription start site region 61066
Tssr61067 6 53821224 to 53821259 35 - TSS region transcription start site region 61067
4930566K11Rik 6 53844169 to 53845055 886 unclassified gene RIKEN cDNA 4930566K11 gene
Cpgi17456 6 53844783 to 53845054 271 CpG island CpG island 17456
Gm16499 6 53844899 to 53858947 14048 + lincRNA gene predicted gene 16499
Gm22910 6 53872017 to 53872148 131 - snoRNA gene predicted gene, 22910
Cpvl 6 53873279 to 53978671 105392 - protein coding gene carboxypeptidase, vitellogenic-like
Gm33716 6 53880763 to 53883101 2338 + lncRNA gene predicted gene, 33716
4921529L05Rik 6 53978691 to 54017383 38692 + lncRNA gene RIKEN cDNA 4921529L05 gene
Tssr56578 6 53978696 to 53978715 19 + TSS region transcription start site region 56578
Tssr56579 6 53978722 to 53978730 8 + TSS region transcription start site region 56579
Cpgi17457 6 54038977 to 54040670 1693 CpG island CpG island 17457
Tssr56580 6 54039497 to 54039556 59 + TSS region transcription start site region 56580
Tssr56581 6 54039558 to 54039575 17 + TSS region transcription start site region 56581
Tssr56582 6 54039590 to 54039605 15 + TSS region transcription start site region 56582
Tssr56583 6 54039646 to 54039695 49 + TSS region transcription start site region 56583
Tssr56584 6 54039709 to 54039733 24 + TSS region transcription start site region 56584
Tssr56585 6 54039746 to 54039761 15 + TSS region transcription start site region 56585
Tssr61068 6 54039888 to 54039892 4 - TSS region transcription start site region 61068
Chn2 6 54039932 to 54301812 261880 + protein coding gene chimerin 2
Tssr56586 6 54039935 to 54040016 81 + TSS region transcription start site region 56586
Tssr56587 6 54040078 to 54040091 13 + TSS region transcription start site region 56587
Tssr56588 6 54041378 to 54041382 4 + TSS region transcription start site region 56588
9530036M11Rik 6 54146887 to 54150937 4050 - antisense lncRNA gene RIKEN cDNA 9530036M11 gene
Tssr61069 6 54151032 to 54151052 20 - TSS region transcription start site region 61069
Tssr61070 6 54158599 to 54158615 16 - TSS region transcription start site region 61070
Gm15526 6 54177480 to 54177683 203 - pseudogene predicted gene 15526
Tssr61071 6 54241893 to 54241912 19 - TSS region transcription start site region 61071
Gm15527 6 54245742 to 54279076 33334 - unclassified non-coding RNA gene predicted gene 15527
Tssr56589 6 54264801 to 54264837 36 + TSS region transcription start site region 56589
Tssr56590 6 54264839 to 54264863 24 + TSS region transcription start site region 56590
Tssr56591 6 54267135 to 54267145 10 + TSS region transcription start site region 56591
Tssr56592 6 54267151 to 54267180 29 + TSS region transcription start site region 56592
Tssr56593 6 54267189 to 54267191 2 + TSS region transcription start site region 56593
Tssr56594 6 54269135 to 54269161 26 + TSS region transcription start site region 56594
Tssr56595 6 54269165 to 54269172 7 + TSS region transcription start site region 56595
9130019P16Rik 6 54269681 to 54430221 160540 - lncRNA gene RIKEN cDNA 9130019P16 gene
Tssr56596 6 54272766 to 54272777 11 + TSS region transcription start site region 56596
Tssr56597 6 54272785 to 54272804 19 + TSS region transcription start site region 56597
Tssr56598 6 54272806 to 54272854 48 + TSS region transcription start site region 56598
Tssr61072 6 54279069 to 54279082 13 - TSS region transcription start site region 61072
Tssr61073 6 54292742 to 54292744 2 - TSS region transcription start site region 61073
Tssr56599 6 54292899 to 54292909 10 + TSS region transcription start site region 56599
Tssr56600 6 54293064 to 54293075 11 + TSS region transcription start site region 56600