Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:52242451-52750085

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87 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hoxa11 6 52242106 to 52245810 3704 - protein coding gene homeobox A11
Cpgi17436 6 52244854 to 52246772 1918 CpG island CpG island 17436
Tssr56517 6 52245001 to 52245014 13 + TSS region transcription start site region 56517
Tssr56518 6 52245024 to 52245039 15 + TSS region transcription start site region 56518
Hoxa11os 6 52245243 to 52249769 4526 + lncRNA gene homeobox A11, opposite strand
Tssr61029 6 52245748 to 52245763 15 - TSS region transcription start site region 61029
Tssr61030 6 52245764 to 52245793 29 - TSS region transcription start site region 61030
Tssr61031 6 52245796 to 52245826 30 - TSS region transcription start site region 61031
Tssr1847 6 52245924 to 52245931 7 + TSS region transcription start site region 1847
Tssr56519 6 52245965 to 52245987 22 + TSS region transcription start site region 56519
Tssr56520 6 52245995 to 52246012 17 + TSS region transcription start site region 56520
Gm28032 6 52246009 to 52246104 95 + unclassified non-coding RNA gene predicted gene, 28032
Gm27492 6 52246399 to 52246585 186 + unclassified non-coding RNA gene predicted gene, 27492
Gm27695 6 52246718 to 52246808 90 + unclassified non-coding RNA gene predicted gene, 27695
Gm27817 6 52247421 to 52247653 232 + unclassified non-coding RNA gene predicted gene, 27817
Gm27454 6 52248332 to 52248535 203 + unclassified non-coding RNA gene predicted gene, 27454
Gm27543 6 52249299 to 52249475 176 + unclassified non-coding RNA gene predicted gene, 27543
Cpgi17437 6 52249308 to 52249579 271 CpG island CpG island 17437
Cpgi17438 6 52252434 to 52253962 1528 CpG island CpG island 17438
9530018H14Rik 6 52256218 to 52257460 1242 - unclassified gene RIKEN cDNA 9530018H14 gene
Hoxa13 6 52258853 to 52260880 2027 - protein coding gene homeobox A13
Cpgi17439 6 52259565 to 52261506 1941 CpG island CpG island 17439
Tssr61032 6 52260780 to 52260793 13 - TSS region transcription start site region 61032
Tssr61033 6 52260822 to 52260837 15 - TSS region transcription start site region 61033
Gm27280 6 52261154 to 52261212 58 + unclassified non-coding RNA gene predicted gene, 27280
Gm27985 6 52262592 to 52262969 377 + unclassified non-coding RNA gene predicted gene, 27985
Hottip 6 52262775 to 52267603 4828 + lincRNA gene Hoxa distal transcript antisense RNA
Gm27383 6 52263058 to 52263418 360 + unclassified non-coding RNA gene predicted gene, 27383
Gm27866 6 52266584 to 52266754 170 + unclassified non-coding RNA gene predicted gene, 27866
Cpgi17440 6 52270666 to 52270822 156 CpG island CpG island 17440
Cpgi17441 6 52274139 to 52274517 378 CpG island CpG island 17441
Tssr1848 6 52285029 to 52285034 5 + TSS region transcription start site region 1848
Cpgi17442 6 52291061 to 52291630 569 CpG island CpG island 17442
Gm44294 6 52297124 to 52297851 727 + unclassified gene predicted gene, 44294
Cpgi17443 6 52305864 to 52306441 577 CpG island CpG island 17443
Evx1os 6 52308389 to 52314832 6443 - antisense lncRNA gene even skipped homeotic gene 1, opposite strand
Cpgi17444 6 52310330 to 52310851 521 CpG island CpG island 17444
Cpgi17445 6 52313329 to 52314881 1552 CpG island CpG island 17445
Tssr56521 6 52313430 to 52313445 15 + TSS region transcription start site region 56521
Tssr61034 6 52313498 to 52313510 12 - TSS region transcription start site region 61034
Evx1 6 52313498 to 52318378 4880 + protein coding gene even-skipped homeobox 1
Tssr56522 6 52313630 to 52313641 11 + TSS region transcription start site region 56522
Cpgi17446 6 52315638 to 52316054 416 CpG island CpG island 17446
Cpgi17447 6 52316156 to 52317690 1534 CpG island CpG island 17447
Cpgi17448 6 52321928 to 52322106 178 CpG island CpG island 17448
Gm8129 6 52346730 to 52346942 212 - pseudogene predicted pseudogene 8129
Tssr61035 6 52346997 to 52347004 7 - TSS region transcription start site region 61035
Gm15054 6 52357544 to 52357824 280 - pseudogene predicted gene 15054
Tssr56523 6 52368251 to 52368256 5 + TSS region transcription start site region 56523
D6Mit1004 6 52390970 to 52391092 122 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 1004
1700094M24Rik 6 52492451 to 52500085 7634 + lincRNA gene RIKEN cDNA 1700094M24 gene
Tssr56524 6 52492478 to 52492499 21 + TSS region transcription start site region 56524
Tssr56525 6 52492501 to 52492508 7 + TSS region transcription start site region 56525
Gm44028 6 52509889 to 52514036 4147 + lincRNA gene predicted gene, 44028
Hibadh 6 52546230 to 52640300 94070 - protein coding gene 3-hydroxyisobutyrate dehydrogenase
Tssr61036 6 52548863 to 52548886 23 - TSS region transcription start site region 61036
Gm44445 6 52560552 to 52563234 2682 + unclassified gene predicted gene, 44445
Gm33047 6 52565955 to 52579813 13858 - lncRNA gene predicted gene, 33047
Tssr56526 6 52570440 to 52570442 2 + TSS region transcription start site region 56526
Gm44434 6 52599501 to 52603245 3744 - unclassified gene predicted gene, 44434
Tssr61037 6 52620210 to 52620217 7 - TSS region transcription start site region 61037
Gm24355 6 52639234 to 52639355 121 - snoRNA gene predicted gene, 24355
Cpgi17449 6 52639890 to 52640612 722 CpG island CpG island 17449
Tssr61038 6 52640247 to 52640259 12 - TSS region transcription start site region 61038
Tssr61039 6 52640270 to 52640281 11 - TSS region transcription start site region 61039
Tssr61040 6 52640303 to 52640386 83 - TSS region transcription start site region 61040
Gm43966 6 52713344 to 52713955 611 - unclassified gene predicted gene, 43966
Cpgi17450 6 52713593 to 52714588 995 CpG island CpG island 17450
Tssr61041 6 52713617 to 52713626 9 - TSS region transcription start site region 61041
Tssr61042 6 52713627 to 52713639 12 - TSS region transcription start site region 61042
Tax1bp1 6 52713729 to 52766780 53051 + protein coding gene Tax1 (human T cell leukemia virus type I) binding protein 1
Tssr56527 6 52713731 to 52713800 69 + TSS region transcription start site region 56527
Tssr56528 6 52714003 to 52714049 46 + TSS region transcription start site region 56528
Tssr56529 6 52714050 to 52714078 28 + TSS region transcription start site region 56529
Tssr61043 6 52714330 to 52714349 19 - TSS region transcription start site region 61043
Tssr56530 6 52714412 to 52714440 28 + TSS region transcription start site region 56530
Tssr56531 6 52714445 to 52714467 22 + TSS region transcription start site region 56531
Tssr56532 6 52720319 to 52720324 5 + TSS region transcription start site region 56532
Tssr56533 6 52721366 to 52721379 13 + TSS region transcription start site region 56533
Tssr56534 6 52721394 to 52721428 34 + TSS region transcription start site region 56534
Gm43967 6 52722630 to 52722930 300 - pseudogene predicted gene, 43967
Tssr56535 6 52727192 to 52727230 38 + TSS region transcription start site region 56535
Tssr56536 6 52729331 to 52729370 39 + TSS region transcription start site region 56536
Tssr56537 6 52729412 to 52729445 33 + TSS region transcription start site region 56537
Tssr56538 6 52733184 to 52733199 15 + TSS region transcription start site region 56538
Tssr56539 6 52737077 to 52737111 34 + TSS region transcription start site region 56539
Tssr56540 6 52745695 to 52745698 3 + TSS region transcription start site region 56540