Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:52230970-52551092

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hoxa10 6 52231197 to 52240854 9657 - protein coding gene homeobox A10
Cpgi17433 6 52232477 to 52233014 537 CpG island CpG island 17433
Tssr61017 6 52233183 to 52233194 11 - TSS region transcription start site region 61017
Tssr61018 6 52233483 to 52233487 4 - TSS region transcription start site region 61018
Cpgi17434 6 52233588 to 52235164 1576 CpG island CpG island 17434
Tssr1845 6 52233988 to 52233996 8 - TSS region transcription start site region 1845
Tssr61019 6 52234226 to 52234237 11 - TSS region transcription start site region 61019
Tssr61020 6 52234817 to 52234825 8 - TSS region transcription start site region 61020
Tssr61021 6 52234881 to 52234894 13 - TSS region transcription start site region 61021
Tssr61022 6 52234902 to 52234960 58 - TSS region transcription start site region 61022
Tssr56516 6 52235120 to 52235127 7 + TSS region transcription start site region 56516
Cpgi17435 6 52240066 to 52240821 755 CpG island CpG island 17435
Tssr61023 6 52240468 to 52240501 33 - TSS region transcription start site region 61023
Tssr1846 6 52240638 to 52240643 5 - TSS region transcription start site region 1846
Tssr61024 6 52240657 to 52240668 11 - TSS region transcription start site region 61024
Tssr61025 6 52240669 to 52240683 14 - TSS region transcription start site region 61025
Tssr61026 6 52240761 to 52240768 7 - TSS region transcription start site region 61026
Tssr61027 6 52240841 to 52240854 13 - TSS region transcription start site region 61027
Tssr61028 6 52240859 to 52240874 15 - TSS region transcription start site region 61028
Hoxa11 6 52242106 to 52245810 3704 - protein coding gene homeobox A11
Cpgi17436 6 52244854 to 52246772 1918 CpG island CpG island 17436
Tssr56517 6 52245001 to 52245014 13 + TSS region transcription start site region 56517
Tssr56518 6 52245024 to 52245039 15 + TSS region transcription start site region 56518
Hoxa11os 6 52245243 to 52249769 4526 + lncRNA gene homeobox A11, opposite strand
Tssr61029 6 52245748 to 52245763 15 - TSS region transcription start site region 61029
Tssr61030 6 52245764 to 52245793 29 - TSS region transcription start site region 61030
Tssr61031 6 52245796 to 52245826 30 - TSS region transcription start site region 61031
Tssr1847 6 52245924 to 52245931 7 + TSS region transcription start site region 1847
Tssr56519 6 52245965 to 52245987 22 + TSS region transcription start site region 56519
Tssr56520 6 52245995 to 52246012 17 + TSS region transcription start site region 56520
Gm28032 6 52246009 to 52246104 95 + unclassified non-coding RNA gene predicted gene, 28032
Gm27492 6 52246399 to 52246585 186 + unclassified non-coding RNA gene predicted gene, 27492
Gm27695 6 52246718 to 52246808 90 + unclassified non-coding RNA gene predicted gene, 27695
Gm27817 6 52247421 to 52247653 232 + unclassified non-coding RNA gene predicted gene, 27817
Gm27454 6 52248332 to 52248535 203 + unclassified non-coding RNA gene predicted gene, 27454
Gm27543 6 52249299 to 52249475 176 + unclassified non-coding RNA gene predicted gene, 27543
Cpgi17437 6 52249308 to 52249579 271 CpG island CpG island 17437
Cpgi17438 6 52252434 to 52253962 1528 CpG island CpG island 17438
9530018H14Rik 6 52256218 to 52257460 1242 - unclassified gene RIKEN cDNA 9530018H14 gene
Hoxa13 6 52258853 to 52260880 2027 - protein coding gene homeobox A13
Cpgi17439 6 52259565 to 52261506 1941 CpG island CpG island 17439
Tssr61032 6 52260780 to 52260793 13 - TSS region transcription start site region 61032
Tssr61033 6 52260822 to 52260837 15 - TSS region transcription start site region 61033
Gm27280 6 52261154 to 52261212 58 + unclassified non-coding RNA gene predicted gene, 27280
Gm27985 6 52262592 to 52262969 377 + unclassified non-coding RNA gene predicted gene, 27985
Hottip 6 52262775 to 52267603 4828 + lincRNA gene Hoxa distal transcript antisense RNA
Gm27383 6 52263058 to 52263418 360 + unclassified non-coding RNA gene predicted gene, 27383
Gm27866 6 52266584 to 52266754 170 + unclassified non-coding RNA gene predicted gene, 27866
Cpgi17440 6 52270666 to 52270822 156 CpG island CpG island 17440
Cpgi17441 6 52274139 to 52274517 378 CpG island CpG island 17441
Tssr1848 6 52285029 to 52285034 5 + TSS region transcription start site region 1848
Cpgi17442 6 52291061 to 52291630 569 CpG island CpG island 17442
Gm44294 6 52297124 to 52297851 727 + unclassified gene predicted gene, 44294
Cpgi17443 6 52305864 to 52306441 577 CpG island CpG island 17443
Evx1os 6 52308389 to 52314832 6443 - antisense lncRNA gene even skipped homeotic gene 1, opposite strand
Cpgi17444 6 52310330 to 52310851 521 CpG island CpG island 17444
Cpgi17445 6 52313329 to 52314881 1552 CpG island CpG island 17445
Tssr56521 6 52313430 to 52313445 15 + TSS region transcription start site region 56521
Evx1 6 52313498 to 52318378 4880 + protein coding gene even-skipped homeobox 1
Tssr61034 6 52313498 to 52313510 12 - TSS region transcription start site region 61034
Tssr56522 6 52313630 to 52313641 11 + TSS region transcription start site region 56522
Cpgi17446 6 52315638 to 52316054 416 CpG island CpG island 17446
Cpgi17447 6 52316156 to 52317690 1534 CpG island CpG island 17447
Cpgi17448 6 52321928 to 52322106 178 CpG island CpG island 17448
Gm8129 6 52346730 to 52346942 212 - pseudogene predicted pseudogene 8129
Tssr61035 6 52346997 to 52347004 7 - TSS region transcription start site region 61035
Gm15054 6 52357544 to 52357824 280 - pseudogene predicted gene 15054
Tssr56523 6 52368251 to 52368256 5 + TSS region transcription start site region 56523
D6Mit1004 6 52390970 to 52391092 122 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 1004
1700094M24Rik 6 52492451 to 52500085 7634 + lincRNA gene RIKEN cDNA 1700094M24 gene
Tssr56524 6 52492478 to 52492499 21 + TSS region transcription start site region 56524
Tssr56525 6 52492501 to 52492508 7 + TSS region transcription start site region 56525
Gm44028 6 52509889 to 52514036 4147 + lincRNA gene predicted gene, 44028
Hibadh 6 52546230 to 52640300 94070 - protein coding gene 3-hydroxyisobutyrate dehydrogenase
Tssr61036 6 52548863 to 52548886 23 - TSS region transcription start site region 61036