Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:52213097-52237370

Filter by:
45 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm28308 6 52163359 to 52213339 49980 - protein coding gene predicted gene 28308
Hoxaas3 6 52201124 to 52213597 12473 + antisense lncRNA gene Hoxa cluster antisense RNA 3
Cpgi17426 6 52211380 to 52213447 2067 CpG island CpG island 17426
Tssr61000 6 52213320 to 52213343 23 - TSS region transcription start site region 61000
Mira 6 52214491 to 52215288 797 - lncRNA gene mistral long non-coding RNA
Cpgi17427 6 52215472 to 52216070 598 CpG island CpG island 17427
Hoxa7 6 52215623 to 52218573 2950 - protein coding gene homeobox A7
Cpgi17428 6 52216847 to 52218081 1234 CpG island CpG island 17428
Tssr61001 6 52217435 to 52217451 16 - TSS region transcription start site region 61001
Tssr61002 6 52217460 to 52217493 33 - TSS region transcription start site region 61002
Tssr61003 6 52217514 to 52217550 36 - TSS region transcription start site region 61003
Tssr56512 6 52217633 to 52217646 13 + TSS region transcription start site region 56512
Tssr61004 6 52218686 to 52218716 30 - TSS region transcription start site region 61004
Cpgi17429 6 52221290 to 52222117 827 CpG island CpG island 17429
Tssr61005 6 52221573 to 52221591 18 - TSS region transcription start site region 61005
Hoxa9 6 52223097 to 52227370 4273 - protein coding gene homeobox A9
Cpgi17430 6 52224325 to 52224507 182 CpG island CpG island 17430
Tssr61006 6 52224593 to 52224611 18 - TSS region transcription start site region 61006
Cpgi17431 6 52225130 to 52226379 1249 CpG island CpG island 17431
Tssr61007 6 52225216 to 52225231 15 - TSS region transcription start site region 61007
Tssr61008 6 52225237 to 52225256 19 - TSS region transcription start site region 61008
Tssr61009 6 52225822 to 52225864 42 - TSS region transcription start site region 61009
Tssr61010 6 52225945 to 52225956 11 - TSS region transcription start site region 61010
Tssr61011 6 52226145 to 52226162 17 - TSS region transcription start site region 61011
Tssr61012 6 52226165 to 52226196 31 - TSS region transcription start site region 61012
Cpgi17432 6 52228984 to 52230890 1906 CpG island CpG island 17432
Tssr56513 6 52229895 to 52229916 21 + TSS region transcription start site region 56513
Tssr56514 6 52229971 to 52229980 9 + TSS region transcription start site region 56514
Tssr56515 6 52230009 to 52230024 15 + TSS region transcription start site region 56515
Tssr61013 6 52230080 to 52230095 15 - TSS region transcription start site region 61013
Mir196b 6 52230081 to 52230165 84 - miRNA gene microRNA 196b
Tssr61014 6 52230525 to 52230538 13 - TSS region transcription start site region 61014
Tssr61015 6 52230555 to 52230574 19 - TSS region transcription start site region 61015
Tssr61016 6 52230947 to 52230950 3 - TSS region transcription start site region 61016
Hoxa10 6 52231197 to 52240854 9657 - protein coding gene homeobox A10
Cpgi17433 6 52232477 to 52233014 537 CpG island CpG island 17433
Tssr61017 6 52233183 to 52233194 11 - TSS region transcription start site region 61017
Tssr61018 6 52233483 to 52233487 4 - TSS region transcription start site region 61018
Cpgi17434 6 52233588 to 52235164 1576 CpG island CpG island 17434
Tssr1845 6 52233988 to 52233996 8 - TSS region transcription start site region 1845
Tssr61019 6 52234226 to 52234237 11 - TSS region transcription start site region 61019
Tssr61020 6 52234817 to 52234825 8 - TSS region transcription start site region 61020
Tssr61021 6 52234881 to 52234894 13 - TSS region transcription start site region 61021
Tssr61022 6 52234902 to 52234960 58 - TSS region transcription start site region 61022
Tssr56516 6 52235120 to 52235127 7 + TSS region transcription start site region 56516