Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:52205623-52228573

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34 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm28308 6 52163359 to 52213339 49980 - protein coding gene predicted gene 28308
Hoxa3 6 52169062 to 52213067 44005 - protein coding gene homeobox A3
Hoxaas3 6 52201124 to 52213597 12473 + antisense lncRNA gene Hoxa cluster antisense RNA 3
Cpgi17424 6 52205644 to 52206728 1084 CpG island CpG island 17424
Hoxa6 6 52206365 to 52208624 2259 - protein coding gene homeobox A6
Cpgi17425 6 52208173 to 52209145 972 CpG island CpG island 17425
Tssr60996 6 52208595 to 52208604 9 - TSS region transcription start site region 60996
Tssr60997 6 52208645 to 52208678 33 - TSS region transcription start site region 60997
Tssr60998 6 52208694 to 52208705 11 - TSS region transcription start site region 60998
Cpgi17426 6 52211380 to 52213447 2067 CpG island CpG island 17426
Tssr60999 6 52211667 to 52211712 45 - TSS region transcription start site region 60999
Tssr56511 6 52211787 to 52211793 6 + TSS region transcription start site region 56511
Tssr61000 6 52213320 to 52213343 23 - TSS region transcription start site region 61000
Mira 6 52214491 to 52215288 797 - lncRNA gene mistral long non-coding RNA
Cpgi17427 6 52215472 to 52216070 598 CpG island CpG island 17427
Hoxa7 6 52215623 to 52218573 2950 - protein coding gene homeobox A7
Cpgi17428 6 52216847 to 52218081 1234 CpG island CpG island 17428
Tssr61001 6 52217435 to 52217451 16 - TSS region transcription start site region 61001
Tssr61002 6 52217460 to 52217493 33 - TSS region transcription start site region 61002
Tssr61003 6 52217514 to 52217550 36 - TSS region transcription start site region 61003
Tssr56512 6 52217633 to 52217646 13 + TSS region transcription start site region 56512
Tssr61004 6 52218686 to 52218716 30 - TSS region transcription start site region 61004
Cpgi17429 6 52221290 to 52222117 827 CpG island CpG island 17429
Tssr61005 6 52221573 to 52221591 18 - TSS region transcription start site region 61005
Hoxa9 6 52223097 to 52227370 4273 - protein coding gene homeobox A9
Cpgi17430 6 52224325 to 52224507 182 CpG island CpG island 17430
Tssr61006 6 52224593 to 52224611 18 - TSS region transcription start site region 61006
Cpgi17431 6 52225130 to 52226379 1249 CpG island CpG island 17431
Tssr61007 6 52225216 to 52225231 15 - TSS region transcription start site region 61007
Tssr61008 6 52225237 to 52225256 19 - TSS region transcription start site region 61008
Tssr61009 6 52225822 to 52225864 42 - TSS region transcription start site region 61009
Tssr61010 6 52225945 to 52225956 11 - TSS region transcription start site region 61010
Tssr61011 6 52226145 to 52226162 17 - TSS region transcription start site region 61011
Tssr61012 6 52226165 to 52226196 31 - TSS region transcription start site region 61012