Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:52200440-52940442

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172 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm28308 6 52163359 to 52213339 49980 - protein coding gene predicted gene 28308
Hoxa3 6 52169062 to 52213067 44005 - protein coding gene homeobox A3
Cpgi17422 6 52200316 to 52200635 319 CpG island CpG island 17422
Tssr60990 6 52200946 to 52200973 27 - TSS region transcription start site region 60990
Hoxaas3 6 52201124 to 52213597 12473 + antisense lncRNA gene Hoxa cluster antisense RNA 3
Tssr56510 6 52201198 to 52201244 46 + TSS region transcription start site region 56510
Hoxa5 6 52201754 to 52204587 2833 - protein coding gene homeobox A5
Cpgi17423 6 52203237 to 52204872 1635 CpG island CpG island 17423
Tssr60991 6 52204239 to 52204250 11 - TSS region transcription start site region 60991
Tssr60992 6 52204251 to 52204262 11 - TSS region transcription start site region 60992
Tssr60993 6 52204315 to 52204338 23 - TSS region transcription start site region 60993
Tssr60994 6 52204387 to 52204408 21 - TSS region transcription start site region 60994
Tssr60995 6 52204415 to 52204463 48 - TSS region transcription start site region 60995
Cpgi17424 6 52205644 to 52206728 1084 CpG island CpG island 17424
Hoxa6 6 52206365 to 52208624 2259 - protein coding gene homeobox A6
Cpgi17425 6 52208173 to 52209145 972 CpG island CpG island 17425
Tssr60996 6 52208595 to 52208604 9 - TSS region transcription start site region 60996
Tssr60997 6 52208645 to 52208678 33 - TSS region transcription start site region 60997
Tssr60998 6 52208694 to 52208705 11 - TSS region transcription start site region 60998
Cpgi17426 6 52211380 to 52213447 2067 CpG island CpG island 17426
Tssr60999 6 52211667 to 52211712 45 - TSS region transcription start site region 60999
Tssr56511 6 52211787 to 52211793 6 + TSS region transcription start site region 56511
Tssr61000 6 52213320 to 52213343 23 - TSS region transcription start site region 61000
Mira 6 52214491 to 52215288 797 - lncRNA gene mistral long non-coding RNA
Cpgi17427 6 52215472 to 52216070 598 CpG island CpG island 17427
Hoxa7 6 52215623 to 52218573 2950 - protein coding gene homeobox A7
Cpgi17428 6 52216847 to 52218081 1234 CpG island CpG island 17428
Tssr61001 6 52217435 to 52217451 16 - TSS region transcription start site region 61001
Tssr61002 6 52217460 to 52217493 33 - TSS region transcription start site region 61002
Tssr61003 6 52217514 to 52217550 36 - TSS region transcription start site region 61003
Tssr56512 6 52217633 to 52217646 13 + TSS region transcription start site region 56512
Tssr61004 6 52218686 to 52218716 30 - TSS region transcription start site region 61004
Cpgi17429 6 52221290 to 52222117 827 CpG island CpG island 17429
Tssr61005 6 52221573 to 52221591 18 - TSS region transcription start site region 61005
Hoxa9 6 52223097 to 52227370 4273 - protein coding gene homeobox A9
Cpgi17430 6 52224325 to 52224507 182 CpG island CpG island 17430
Tssr61006 6 52224593 to 52224611 18 - TSS region transcription start site region 61006
Cpgi17431 6 52225130 to 52226379 1249 CpG island CpG island 17431
Tssr61007 6 52225216 to 52225231 15 - TSS region transcription start site region 61007
Tssr61008 6 52225237 to 52225256 19 - TSS region transcription start site region 61008
Tssr61009 6 52225822 to 52225864 42 - TSS region transcription start site region 61009
Tssr61010 6 52225945 to 52225956 11 - TSS region transcription start site region 61010
Tssr61011 6 52226145 to 52226162 17 - TSS region transcription start site region 61011
Tssr61012 6 52226165 to 52226196 31 - TSS region transcription start site region 61012
Cpgi17432 6 52228984 to 52230890 1906 CpG island CpG island 17432
Tssr56513 6 52229895 to 52229916 21 + TSS region transcription start site region 56513
Tssr56514 6 52229971 to 52229980 9 + TSS region transcription start site region 56514
Tssr56515 6 52230009 to 52230024 15 + TSS region transcription start site region 56515
Tssr61013 6 52230080 to 52230095 15 - TSS region transcription start site region 61013
Mir196b 6 52230081 to 52230165 84 - miRNA gene microRNA 196b
Tssr61014 6 52230525 to 52230538 13 - TSS region transcription start site region 61014
Tssr61015 6 52230555 to 52230574 19 - TSS region transcription start site region 61015
Tssr61016 6 52230947 to 52230950 3 - TSS region transcription start site region 61016
Hoxa10 6 52231197 to 52240854 9657 - protein coding gene homeobox A10
Cpgi17433 6 52232477 to 52233014 537 CpG island CpG island 17433
Tssr61017 6 52233183 to 52233194 11 - TSS region transcription start site region 61017
Tssr61018 6 52233483 to 52233487 4 - TSS region transcription start site region 61018
Cpgi17434 6 52233588 to 52235164 1576 CpG island CpG island 17434
Tssr1845 6 52233988 to 52233996 8 - TSS region transcription start site region 1845
Tssr61019 6 52234226 to 52234237 11 - TSS region transcription start site region 61019
Tssr61020 6 52234817 to 52234825 8 - TSS region transcription start site region 61020
Tssr61021 6 52234881 to 52234894 13 - TSS region transcription start site region 61021
Tssr61022 6 52234902 to 52234960 58 - TSS region transcription start site region 61022
Tssr56516 6 52235120 to 52235127 7 + TSS region transcription start site region 56516
Cpgi17435 6 52240066 to 52240821 755 CpG island CpG island 17435
Tssr61023 6 52240468 to 52240501 33 - TSS region transcription start site region 61023
Tssr1846 6 52240638 to 52240643 5 - TSS region transcription start site region 1846
Tssr61024 6 52240657 to 52240668 11 - TSS region transcription start site region 61024
Tssr61025 6 52240669 to 52240683 14 - TSS region transcription start site region 61025
Tssr61026 6 52240761 to 52240768 7 - TSS region transcription start site region 61026
Tssr61027 6 52240841 to 52240854 13 - TSS region transcription start site region 61027
Tssr61028 6 52240859 to 52240874 15 - TSS region transcription start site region 61028
Hoxa11 6 52242106 to 52245810 3704 - protein coding gene homeobox A11
Cpgi17436 6 52244854 to 52246772 1918 CpG island CpG island 17436
Tssr56517 6 52245001 to 52245014 13 + TSS region transcription start site region 56517
Tssr56518 6 52245024 to 52245039 15 + TSS region transcription start site region 56518
Hoxa11os 6 52245243 to 52249769 4526 + lncRNA gene homeobox A11, opposite strand
Tssr61029 6 52245748 to 52245763 15 - TSS region transcription start site region 61029
Tssr61030 6 52245764 to 52245793 29 - TSS region transcription start site region 61030
Tssr61031 6 52245796 to 52245826 30 - TSS region transcription start site region 61031
Tssr1847 6 52245924 to 52245931 7 + TSS region transcription start site region 1847
Tssr56519 6 52245965 to 52245987 22 + TSS region transcription start site region 56519
Tssr56520 6 52245995 to 52246012 17 + TSS region transcription start site region 56520
Gm28032 6 52246009 to 52246104 95 + unclassified non-coding RNA gene predicted gene, 28032
Gm27492 6 52246399 to 52246585 186 + unclassified non-coding RNA gene predicted gene, 27492
Gm27695 6 52246718 to 52246808 90 + unclassified non-coding RNA gene predicted gene, 27695
Gm27817 6 52247421 to 52247653 232 + unclassified non-coding RNA gene predicted gene, 27817
Gm27454 6 52248332 to 52248535 203 + unclassified non-coding RNA gene predicted gene, 27454
Gm27543 6 52249299 to 52249475 176 + unclassified non-coding RNA gene predicted gene, 27543
Cpgi17437 6 52249308 to 52249579 271 CpG island CpG island 17437
Cpgi17438 6 52252434 to 52253962 1528 CpG island CpG island 17438
9530018H14Rik 6 52256218 to 52257460 1242 - unclassified gene RIKEN cDNA 9530018H14 gene
Hoxa13 6 52258853 to 52260880 2027 - protein coding gene homeobox A13
Cpgi17439 6 52259565 to 52261506 1941 CpG island CpG island 17439
Tssr61032 6 52260780 to 52260793 13 - TSS region transcription start site region 61032
Tssr61033 6 52260822 to 52260837 15 - TSS region transcription start site region 61033
Gm27280 6 52261154 to 52261212 58 + unclassified non-coding RNA gene predicted gene, 27280
Gm27985 6 52262592 to 52262969 377 + unclassified non-coding RNA gene predicted gene, 27985
Hottip 6 52262775 to 52267603 4828 + lincRNA gene Hoxa distal transcript antisense RNA
Gm27383 6 52263058 to 52263418 360 + unclassified non-coding RNA gene predicted gene, 27383
Gm27866 6 52266584 to 52266754 170 + unclassified non-coding RNA gene predicted gene, 27866
Cpgi17440 6 52270666 to 52270822 156 CpG island CpG island 17440
Cpgi17441 6 52274139 to 52274517 378 CpG island CpG island 17441
Tssr1848 6 52285029 to 52285034 5 + TSS region transcription start site region 1848
Cpgi17442 6 52291061 to 52291630 569 CpG island CpG island 17442
Gm44294 6 52297124 to 52297851 727 + unclassified gene predicted gene, 44294
Cpgi17443 6 52305864 to 52306441 577 CpG island CpG island 17443
Evx1os 6 52308389 to 52314832 6443 - antisense lncRNA gene even skipped homeotic gene 1, opposite strand
Cpgi17444 6 52310330 to 52310851 521 CpG island CpG island 17444
Cpgi17445 6 52313329 to 52314881 1552 CpG island CpG island 17445
Tssr56521 6 52313430 to 52313445 15 + TSS region transcription start site region 56521
Evx1 6 52313498 to 52318378 4880 + protein coding gene even-skipped homeobox 1
Tssr61034 6 52313498 to 52313510 12 - TSS region transcription start site region 61034
Tssr56522 6 52313630 to 52313641 11 + TSS region transcription start site region 56522
Cpgi17446 6 52315638 to 52316054 416 CpG island CpG island 17446
Cpgi17447 6 52316156 to 52317690 1534 CpG island CpG island 17447
Cpgi17448 6 52321928 to 52322106 178 CpG island CpG island 17448
Gm8129 6 52346730 to 52346942 212 - pseudogene predicted pseudogene 8129
Tssr61035 6 52346997 to 52347004 7 - TSS region transcription start site region 61035
Gm15054 6 52357544 to 52357824 280 - pseudogene predicted gene 15054
Tssr56523 6 52368251 to 52368256 5 + TSS region transcription start site region 56523
D6Mit1004 6 52390970 to 52391092 122 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 1004
1700094M24Rik 6 52492451 to 52500085 7634 + lincRNA gene RIKEN cDNA 1700094M24 gene
Tssr56524 6 52492478 to 52492499 21 + TSS region transcription start site region 56524
Tssr56525 6 52492501 to 52492508 7 + TSS region transcription start site region 56525
Gm44028 6 52509889 to 52514036 4147 + lincRNA gene predicted gene, 44028
Hibadh 6 52546230 to 52640300 94070 - protein coding gene 3-hydroxyisobutyrate dehydrogenase
Tssr61036 6 52548863 to 52548886 23 - TSS region transcription start site region 61036
Gm44445 6 52560552 to 52563234 2682 + unclassified gene predicted gene, 44445
Gm33047 6 52565955 to 52579813 13858 - lncRNA gene predicted gene, 33047
Tssr56526 6 52570440 to 52570442 2 + TSS region transcription start site region 56526
Gm44434 6 52599501 to 52603245 3744 - unclassified gene predicted gene, 44434
Tssr61037 6 52620210 to 52620217 7 - TSS region transcription start site region 61037
Gm24355 6 52639234 to 52639355 121 - snoRNA gene predicted gene, 24355
Cpgi17449 6 52639890 to 52640612 722 CpG island CpG island 17449
Tssr61038 6 52640247 to 52640259 12 - TSS region transcription start site region 61038
Tssr61039 6 52640270 to 52640281 11 - TSS region transcription start site region 61039
Tssr61040 6 52640303 to 52640386 83 - TSS region transcription start site region 61040
Gm43966 6 52713344 to 52713955 611 - unclassified gene predicted gene, 43966
Cpgi17450 6 52713593 to 52714588 995 CpG island CpG island 17450
Tssr61041 6 52713617 to 52713626 9 - TSS region transcription start site region 61041
Tssr61042 6 52713627 to 52713639 12 - TSS region transcription start site region 61042
Tax1bp1 6 52713729 to 52766780 53051 + protein coding gene Tax1 (human T cell leukemia virus type I) binding protein 1
Tssr56527 6 52713731 to 52713800 69 + TSS region transcription start site region 56527
Tssr56528 6 52714003 to 52714049 46 + TSS region transcription start site region 56528
Tssr56529 6 52714050 to 52714078 28 + TSS region transcription start site region 56529
Tssr61043 6 52714330 to 52714349 19 - TSS region transcription start site region 61043
Tssr56530 6 52714412 to 52714440 28 + TSS region transcription start site region 56530
Tssr56531 6 52714445 to 52714467 22 + TSS region transcription start site region 56531
Tssr56532 6 52720319 to 52720324 5 + TSS region transcription start site region 56532
Tssr56533 6 52721366 to 52721379 13 + TSS region transcription start site region 56533
Tssr56534 6 52721394 to 52721428 34 + TSS region transcription start site region 56534
Gm43967 6 52722630 to 52722930 300 - pseudogene predicted gene, 43967
Tssr56535 6 52727192 to 52727230 38 + TSS region transcription start site region 56535
Tssr56536 6 52729331 to 52729370 39 + TSS region transcription start site region 56536
Tssr56537 6 52729412 to 52729445 33 + TSS region transcription start site region 56537
Tssr56538 6 52733184 to 52733199 15 + TSS region transcription start site region 56538
Tssr56539 6 52737077 to 52737111 34 + TSS region transcription start site region 56539
Tssr56540 6 52745695 to 52745698 3 + TSS region transcription start site region 56540
Jazf1 6 52768797 to 53068631 299834 - protein coding gene JAZF zinc finger 1
Tssr56541 6 52776133 to 52776145 12 + TSS region transcription start site region 56541
Tssr56542 6 52825840 to 52825859 19 + TSS region transcription start site region 56542
Gm15572 6 52843109 to 52843701 592 - pseudogene predicted gene 15572
Tssr61044 6 52866312 to 52866333 21 - TSS region transcription start site region 61044
Tssr1849 6 52866493 to 52866503 10 + TSS region transcription start site region 1849
Tssr1850 6 52902680 to 52902688 8 + TSS region transcription start site region 1850
Tssr56543 6 52903791 to 52903828 37 + TSS region transcription start site region 56543
Tssr61045 6 52909559 to 52909574 15 - TSS region transcription start site region 61045
Tssr61046 6 52909581 to 52909609 28 - TSS region transcription start site region 61046
Tssr61047 6 52909618 to 52909621 3 - TSS region transcription start site region 61047
Tssr61048 6 52909631 to 52909644 13 - TSS region transcription start site region 61048
Tssr56544 6 52912661 to 52912671 10 + TSS region transcription start site region 56544