Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:52104473-52224490

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95 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Halr1 6 52102949 to 52113684 10735 + lincRNA gene Hoxa adjacent long noncoding RNA 1
Rps8-ps3 6 52118242 to 52118891 649 + pseudogene ribosomal protein S8, pseudogene 3
Tssr1844 6 52118401 to 52118402 1 + TSS region transcription start site region 1844
Rps19-ps14 6 52131778 to 52132046 268 - pseudogene ribosomal protein S19, pseudogene 14
Hoxa1 6 52155590 to 52158317 2727 - protein coding gene homeobox A1
Cpgi17409 6 52156763 to 52157052 289 CpG island CpG island 17409
Cpgi17410 6 52157736 to 52159188 1452 CpG island CpG island 17410
Tssr60974 6 52158292 to 52158324 32 - TSS region transcription start site region 60974
Tssr56499 6 52158406 to 52158423 17 + TSS region transcription start site region 56499
Tssr56500 6 52158428 to 52158456 28 + TSS region transcription start site region 56500
Gm27867 6 52158432 to 52158556 124 + unclassified non-coding RNA gene predicted gene, 27867
Tssr56501 6 52158465 to 52158484 19 + TSS region transcription start site region 56501
Hotairm1 6 52158524 to 52162020 3496 + antisense lncRNA gene Hoxa transcript antisense RNA, myeloid-specific 1
Cpgi17411 6 52160588 to 52160873 285 CpG island CpG island 17411
Gm27861 6 52161042 to 52161255 213 + unclassified non-coding RNA gene predicted gene, 27861
D6Mit93 6 52161713 to 52161848 135 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 93
Gm27868 6 52162010 to 52162111 101 + unclassified non-coding RNA gene predicted gene, 27868
Gm27477 6 52162125 to 52162267 142 + unclassified non-coding RNA gene predicted gene, 27477
Hoxa2 6 52162417 to 52164831 2414 - protein coding gene homeobox A2
Gm28308 6 52163359 to 52213339 49980 - protein coding gene predicted gene 28308
Cpgi17412 6 52164154 to 52164650 496 CpG island CpG island 17412
Tssr60975 6 52164448 to 52164464 16 - TSS region transcription start site region 60975
Tssr60976 6 52164473 to 52164490 17 - TSS region transcription start site region 60976
Tssr60977 6 52164538 to 52164549 11 - TSS region transcription start site region 60977
Tssr60978 6 52164822 to 52164829 7 - TSS region transcription start site region 60978
Cpgi17413 6 52165039 to 52165270 231 CpG island CpG island 17413
Cpgi17414 6 52165648 to 52166045 397 CpG island CpG island 17414
Hoxaas2 6 52165674 to 52169451 3777 + lncRNA gene Hoxa cluster antisense RNA 2
Tssr56502 6 52165703 to 52165715 12 + TSS region transcription start site region 56502
Gm46960 6 52166112 to 52166790 678 - lncRNA gene predicted gene, 46960
Tssr56503 6 52166517 to 52166524 7 + TSS region transcription start site region 56503
Cpgi17415 6 52168592 to 52169076 484 CpG island CpG island 17415
Hoxa3 6 52169062 to 52213067 44005 - protein coding gene homeobox A3
Cpgi17416 6 52170010 to 52171067 1057 CpG island CpG island 17416
Cpgi17417 6 52172360 to 52172928 568 CpG island CpG island 17417
Tssr56504 6 52172810 to 52172825 15 + TSS region transcription start site region 56504
Tssr56505 6 52172875 to 52172887 12 + TSS region transcription start site region 56505
Gm15050 6 52172881 to 52174059 1178 + antisense lncRNA gene predicted gene 15050
Tssr56506 6 52172947 to 52172951 4 + TSS region transcription start site region 56506
Tssr56507 6 52175174 to 52175220 46 + TSS region transcription start site region 56507
Cpgi17418 6 52175193 to 52176195 1002 CpG island CpG island 17418
Tssr60979 6 52175955 to 52175995 40 - TSS region transcription start site region 60979
Tssr56508 6 52177152 to 52177156 4 + TSS region transcription start site region 56508
Cpgi17419 6 52177194 to 52177641 447 CpG island CpG island 17419
5730596B20Rik 6 52177498 to 52180851 3353 + protein coding gene RIKEN cDNA 5730596B20 gene
Gm29430 6 52183110 to 52189925 6815 + antisense lncRNA gene predicted gene 29430
Tssr60980 6 52183828 to 52183855 27 - TSS region transcription start site region 60980
Tssr60981 6 52184127 to 52184151 24 - TSS region transcription start site region 60981
Hoxa4 6 52189687 to 52191703 2016 - protein coding gene homeobox A4
Cpgi17420 6 52190414 to 52190691 277 CpG island CpG island 17420
Tssr56509 6 52190444 to 52190448 4 + TSS region transcription start site region 56509
Tssr60982 6 52190591 to 52190606 15 - TSS region transcription start site region 60982
Cpgi17421 6 52190828 to 52192473 1645 CpG island CpG island 17421
Tssr60983 6 52191262 to 52191285 23 - TSS region transcription start site region 60983
Tssr60984 6 52191318 to 52191342 24 - TSS region transcription start site region 60984
Tssr60985 6 52191347 to 52191365 18 - TSS region transcription start site region 60985
Tssr60986 6 52191383 to 52191393 10 - TSS region transcription start site region 60986
Tssr60987 6 52191618 to 52191645 27 - TSS region transcription start site region 60987
Tssr60988 6 52191675 to 52191685 10 - TSS region transcription start site region 60988
Tssr60989 6 52191695 to 52191716 21 - TSS region transcription start site region 60989
Cpgi17422 6 52200316 to 52200635 319 CpG island CpG island 17422
Tssr60990 6 52200946 to 52200973 27 - TSS region transcription start site region 60990
Hoxaas3 6 52201124 to 52213597 12473 + antisense lncRNA gene Hoxa cluster antisense RNA 3
Tssr56510 6 52201198 to 52201244 46 + TSS region transcription start site region 56510
Hoxa5 6 52201754 to 52204587 2833 - protein coding gene homeobox A5
Cpgi17423 6 52203237 to 52204872 1635 CpG island CpG island 17423
Tssr60991 6 52204239 to 52204250 11 - TSS region transcription start site region 60991
Tssr60992 6 52204251 to 52204262 11 - TSS region transcription start site region 60992
Tssr60993 6 52204315 to 52204338 23 - TSS region transcription start site region 60993
Tssr60994 6 52204387 to 52204408 21 - TSS region transcription start site region 60994
Tssr60995 6 52204415 to 52204463 48 - TSS region transcription start site region 60995
Cpgi17424 6 52205644 to 52206728 1084 CpG island CpG island 17424
Hoxa6 6 52206365 to 52208624 2259 - protein coding gene homeobox A6
Cpgi17425 6 52208173 to 52209145 972 CpG island CpG island 17425
Tssr60996 6 52208595 to 52208604 9 - TSS region transcription start site region 60996
Tssr60997 6 52208645 to 52208678 33 - TSS region transcription start site region 60997
Tssr60998 6 52208694 to 52208705 11 - TSS region transcription start site region 60998
Cpgi17426 6 52211380 to 52213447 2067 CpG island CpG island 17426
Tssr60999 6 52211667 to 52211712 45 - TSS region transcription start site region 60999
Tssr56511 6 52211787 to 52211793 6 + TSS region transcription start site region 56511
Tssr61000 6 52213320 to 52213343 23 - TSS region transcription start site region 61000
Mira 6 52214491 to 52215288 797 - lncRNA gene mistral long non-coding RNA
Cpgi17427 6 52215472 to 52216070 598 CpG island CpG island 17427
Hoxa7 6 52215623 to 52218573 2950 - protein coding gene homeobox A7
Cpgi17428 6 52216847 to 52218081 1234 CpG island CpG island 17428
Tssr61001 6 52217435 to 52217451 16 - TSS region transcription start site region 61001
Tssr61002 6 52217460 to 52217493 33 - TSS region transcription start site region 61002
Tssr61003 6 52217514 to 52217550 36 - TSS region transcription start site region 61003
Tssr56512 6 52217633 to 52217646 13 + TSS region transcription start site region 56512
Tssr61004 6 52218686 to 52218716 30 - TSS region transcription start site region 61004
Cpgi17429 6 52221290 to 52222117 827 CpG island CpG island 17429
Tssr61005 6 52221573 to 52221591 18 - TSS region transcription start site region 61005
Hoxa9 6 52223097 to 52227370 4273 - protein coding gene homeobox A9
Cpgi17430 6 52224325 to 52224507 182 CpG island CpG island 17430
Igf1sl1 6 116155267 to 52161713 -63993554 QTL IGF-1 serum levels 1