Gene symbol | Chromo- some |
Coordinates (bp, mm10) | Size (bp) | Strand | Feature Type | Gene name |
---|---|---|---|---|---|---|
Tssr56495 | 6 | 19 | + | TSS region | transcription start site region 56495 | |
Halr1 | 6 | 10735 | + | lincRNA gene | Hoxa adjacent long noncoding RNA 1 | |
Tssr56496 | 6 | 27 | + | TSS region | transcription start site region 56496 | |
Tssr56497 | 6 | 11 | + | TSS region | transcription start site region 56497 | |
Tssr56498 | 6 | 5 | + | TSS region | transcription start site region 56498 | |
Rps8-ps3 | 6 | 649 | + | pseudogene | ribosomal protein S8, pseudogene 3 | |
Tssr1844 | 6 | 1 | + | TSS region | transcription start site region 1844 | |
Rps19-ps14 | 6 | 268 | - | pseudogene | ribosomal protein S19, pseudogene 14 | |
Hoxa1 | 6 | 2727 | - | protein coding gene | homeobox A1 | |
Cpgi17409 | 6 | 289 | CpG island | CpG island 17409 | ||
Cpgi17410 | 6 | 1452 | CpG island | CpG island 17410 | ||
Tssr60974 | 6 | 32 | - | TSS region | transcription start site region 60974 | |
Tssr56499 | 6 | 17 | + | TSS region | transcription start site region 56499 | |
Tssr56500 | 6 | 28 | + | TSS region | transcription start site region 56500 | |
Gm27867 | 6 | 124 | + | unclassified non-coding RNA gene | predicted gene, 27867 | |
Tssr56501 | 6 | 19 | + | TSS region | transcription start site region 56501 | |
Hotairm1 | 6 | 3496 | + | antisense lncRNA gene | Hoxa transcript antisense RNA, myeloid-specific 1 | |
Cpgi17411 | 6 | 285 | CpG island | CpG island 17411 | ||
Gm27861 | 6 | 213 | + | unclassified non-coding RNA gene | predicted gene, 27861 | |
D6Mit93 | 6 | 135 | DNA segment | DNA segment, Chr 6, Massachusetts Institute of Technology 93 | ||
Gm27868 | 6 | 101 | + | unclassified non-coding RNA gene | predicted gene, 27868 | |
Gm27477 | 6 | 142 | + | unclassified non-coding RNA gene | predicted gene, 27477 | |
Hoxa2 | 6 | 2414 | - | protein coding gene | homeobox A2 | |
Gm28308 | 6 | 49980 | - | protein coding gene | predicted gene 28308 | |
Cpgi17412 | 6 | 496 | CpG island | CpG island 17412 | ||
Tssr60975 | 6 | 16 | - | TSS region | transcription start site region 60975 | |
Tssr60976 | 6 | 17 | - | TSS region | transcription start site region 60976 | |
Tssr60977 | 6 | 11 | - | TSS region | transcription start site region 60977 | |
Tssr60978 | 6 | 7 | - | TSS region | transcription start site region 60978 | |
Cpgi17413 | 6 | 231 | CpG island | CpG island 17413 | ||
Cpgi17414 | 6 | 397 | CpG island | CpG island 17414 | ||
Hoxaas2 | 6 | 3777 | + | lncRNA gene | Hoxa cluster antisense RNA 2 | |
Tssr56502 | 6 | 12 | + | TSS region | transcription start site region 56502 | |
Gm46960 | 6 | 678 | - | lncRNA gene | predicted gene, 46960 | |
Tssr56503 | 6 | 7 | + | TSS region | transcription start site region 56503 | |
Cpgi17415 | 6 | 484 | CpG island | CpG island 17415 | ||
Hoxa3 | 6 | 44005 | - | protein coding gene | homeobox A3 | |
Cpgi17416 | 6 | 1057 | CpG island | CpG island 17416 | ||
Cpgi17417 | 6 | 568 | CpG island | CpG island 17417 | ||
Tssr56504 | 6 | 15 | + | TSS region | transcription start site region 56504 | |
Tssr56505 | 6 | 12 | + | TSS region | transcription start site region 56505 | |
Gm15050 | 6 | 1178 | + | antisense lncRNA gene | predicted gene 15050 | |
Tssr56506 | 6 | 4 | + | TSS region | transcription start site region 56506 | |
Tssr56507 | 6 | 46 | + | TSS region | transcription start site region 56507 | |
Cpgi17418 | 6 | 1002 | CpG island | CpG island 17418 | ||
Tssr60979 | 6 | 40 | - | TSS region | transcription start site region 60979 | |
Tssr56508 | 6 | 4 | + | TSS region | transcription start site region 56508 | |
Cpgi17419 | 6 | 447 | CpG island | CpG island 17419 | ||
5730596B20Rik | 6 | 3353 | + | protein coding gene | RIKEN cDNA 5730596B20 gene | |
Gm29430 | 6 | 6815 | + | antisense lncRNA gene | predicted gene 29430 | |
Tssr60980 | 6 | 27 | - | TSS region | transcription start site region 60980 | |
Tssr60981 | 6 | 24 | - | TSS region | transcription start site region 60981 | |
Hoxa4 | 6 | 2016 | - | protein coding gene | homeobox A4 | |
Cpgi17420 | 6 | 277 | CpG island | CpG island 17420 | ||
Tssr56509 | 6 | 4 | + | TSS region | transcription start site region 56509 | |
Tssr60982 | 6 | 15 | - | TSS region | transcription start site region 60982 | |
Cpgi17421 | 6 | 1645 | CpG island | CpG island 17421 | ||
Tssr60983 | 6 | 23 | - | TSS region | transcription start site region 60983 | |
Tssr60984 | 6 | 24 | - | TSS region | transcription start site region 60984 | |
Tssr60985 | 6 | 18 | - | TSS region | transcription start site region 60985 | |
Tssr60986 | 6 | 10 | - | TSS region | transcription start site region 60986 | |
Tssr60987 | 6 | 27 | - | TSS region | transcription start site region 60987 | |
Tssr60988 | 6 | 10 | - | TSS region | transcription start site region 60988 | |
Tssr60989 | 6 | 21 | - | TSS region | transcription start site region 60989 | |
Cpgi17422 | 6 | 319 | CpG island | CpG island 17422 | ||
Tssr60990 | 6 | 27 | - | TSS region | transcription start site region 60990 | |
Hoxaas3 | 6 | 12473 | + | antisense lncRNA gene | Hoxa cluster antisense RNA 3 | |
Tssr56510 | 6 | 46 | + | TSS region | transcription start site region 56510 | |
Hoxa5 | 6 | 2833 | - | protein coding gene | homeobox A5 | |
Cpgi17423 | 6 | 1635 | CpG island | CpG island 17423 | ||
Tssr60991 | 6 | 11 | - | TSS region | transcription start site region 60991 | |
Tssr60992 | 6 | 11 | - | TSS region | transcription start site region 60992 | |
Tssr60993 | 6 | 23 | - | TSS region | transcription start site region 60993 | |
Tssr60994 | 6 | 21 | - | TSS region | transcription start site region 60994 | |
Tssr60995 | 6 | 48 | - | TSS region | transcription start site region 60995 | |
Cpgi17424 | 6 | 1084 | CpG island | CpG island 17424 | ||
Hoxa6 | 6 | 2259 | - | protein coding gene | homeobox A6 | |
Cpgi17425 | 6 | 972 | CpG island | CpG island 17425 | ||
Tssr60996 | 6 | 9 | - | TSS region | transcription start site region 60996 | |
Tssr60997 | 6 | 33 | - | TSS region | transcription start site region 60997 | |
Tssr60998 | 6 | 11 | - | TSS region | transcription start site region 60998 | |
Cpgi17426 | 6 | 2067 | CpG island | CpG island 17426 | ||
Tssr60999 | 6 | 45 | - | TSS region | transcription start site region 60999 | |
Tssr56511 | 6 | 6 | + | TSS region | transcription start site region 56511 | |
Tssr61000 | 6 | 23 | - | TSS region | transcription start site region 61000 | |
Mira | 6 | 797 | - | lncRNA gene | mistral long non-coding RNA | |
Cpgi17427 | 6 | 598 | CpG island | CpG island 17427 | ||
Hoxa7 | 6 | 2950 | - | protein coding gene | homeobox A7 | |
Cpgi17428 | 6 | 1234 | CpG island | CpG island 17428 | ||
Tssr61001 | 6 | 16 | - | TSS region | transcription start site region 61001 | |
Tssr61002 | 6 | 33 | - | TSS region | transcription start site region 61002 | |
Tssr61003 | 6 | 36 | - | TSS region | transcription start site region 61003 | |
Tssr56512 | 6 | 13 | + | TSS region | transcription start site region 56512 | |
Tssr61004 | 6 | 30 | - | TSS region | transcription start site region 61004 | |
Cpgi17429 | 6 | 827 | CpG island | CpG island 17429 | ||
Tssr61005 | 6 | 18 | - | TSS region | transcription start site region 61005 | |
Hoxa9 | 6 | 4273 | - | protein coding gene | homeobox A9 | |
Cpgi17430 | 6 | 182 | CpG island | CpG island 17430 | ||
Tssr61006 | 6 | 18 | - | TSS region | transcription start site region 61006 | |
Cpgi17431 | 6 | 1249 | CpG island | CpG island 17431 | ||
Tssr61007 | 6 | 15 | - | TSS region | transcription start site region 61007 | |
Tssr61008 | 6 | 19 | - | TSS region | transcription start site region 61008 | |
Tssr61009 | 6 | 42 | - | TSS region | transcription start site region 61009 | |
Tssr61010 | 6 | 11 | - | TSS region | transcription start site region 61010 | |
Tssr61011 | 6 | 17 | - | TSS region | transcription start site region 61011 | |
Tssr61012 | 6 | 31 | - | TSS region | transcription start site region 61012 | |
Cpgi17432 | 6 | 1906 | CpG island | CpG island 17432 | ||
Tssr56513 | 6 | 21 | + | TSS region | transcription start site region 56513 | |
Tssr56514 | 6 | 9 | + | TSS region | transcription start site region 56514 | |
Tssr56515 | 6 | 15 | + | TSS region | transcription start site region 56515 | |
Tssr61013 | 6 | 15 | - | TSS region | transcription start site region 61013 | |
Mir196b | 6 | 84 | - | miRNA gene | microRNA 196b | |
Tssr61014 | 6 | 13 | - | TSS region | transcription start site region 61014 | |
Tssr61015 | 6 | 19 | - | TSS region | transcription start site region 61015 | |
Tssr61016 | 6 | 3 | - | TSS region | transcription start site region 61016 | |
Hoxa10 | 6 | 9657 | - | protein coding gene | homeobox A10 | |
Cpgi17433 | 6 | 537 | CpG island | CpG island 17433 | ||
Tssr61017 | 6 | 11 | - | TSS region | transcription start site region 61017 | |
Tssr61018 | 6 | 4 | - | TSS region | transcription start site region 61018 | |
Cpgi17434 | 6 | 1576 | CpG island | CpG island 17434 | ||
Tssr1845 | 6 | 8 | - | TSS region | transcription start site region 1845 | |
Tssr61019 | 6 | 11 | - | TSS region | transcription start site region 61019 | |
Tssr61020 | 6 | 8 | - | TSS region | transcription start site region 61020 | |
Tssr61021 | 6 | 13 | - | TSS region | transcription start site region 61021 | |
Tssr61022 | 6 | 58 | - | TSS region | transcription start site region 61022 | |
Tssr56516 | 6 | 7 | + | TSS region | transcription start site region 56516 | |
Cpgi17435 | 6 | 755 | CpG island | CpG island 17435 | ||
Tssr61023 | 6 | 33 | - | TSS region | transcription start site region 61023 | |
Tssr1846 | 6 | 5 | - | TSS region | transcription start site region 1846 | |
Tssr61024 | 6 | 11 | - | TSS region | transcription start site region 61024 | |
Tssr61025 | 6 | 14 | - | TSS region | transcription start site region 61025 | |
Tssr61026 | 6 | 7 | - | TSS region | transcription start site region 61026 | |
Tssr61027 | 6 | 13 | - | TSS region | transcription start site region 61027 | |
Tssr61028 | 6 | 15 | - | TSS region | transcription start site region 61028 | |
Hoxa11 | 6 | 3704 | - | protein coding gene | homeobox A11 | |
Cpgi17436 | 6 | 1918 | CpG island | CpG island 17436 | ||
Tssr56517 | 6 | 13 | + | TSS region | transcription start site region 56517 | |
Tssr56518 | 6 | 15 | + | TSS region | transcription start site region 56518 | |
Hoxa11os | 6 | 4526 | + | lncRNA gene | homeobox A11, opposite strand | |
Tssr61029 | 6 | 15 | - | TSS region | transcription start site region 61029 | |
Tssr61030 | 6 | 29 | - | TSS region | transcription start site region 61030 | |
Tssr61031 | 6 | 30 | - | TSS region | transcription start site region 61031 | |
Tssr1847 | 6 | 7 | + | TSS region | transcription start site region 1847 | |
Tssr56519 | 6 | 22 | + | TSS region | transcription start site region 56519 | |
Tssr56520 | 6 | 17 | + | TSS region | transcription start site region 56520 | |
Gm28032 | 6 | 95 | + | unclassified non-coding RNA gene | predicted gene, 28032 | |
Gm27492 | 6 | 186 | + | unclassified non-coding RNA gene | predicted gene, 27492 | |
Gm27695 | 6 | 90 | + | unclassified non-coding RNA gene | predicted gene, 27695 | |
Gm27817 | 6 | 232 | + | unclassified non-coding RNA gene | predicted gene, 27817 | |
Gm27454 | 6 | 203 | + | unclassified non-coding RNA gene | predicted gene, 27454 | |
Gm27543 | 6 | 176 | + | unclassified non-coding RNA gene | predicted gene, 27543 | |
Cpgi17437 | 6 | 271 | CpG island | CpG island 17437 | ||
Cpgi17438 | 6 | 1528 | CpG island | CpG island 17438 | ||
9530018H14Rik | 6 | 1242 | - | unclassified gene | RIKEN cDNA 9530018H14 gene | |
Hoxa13 | 6 | 2027 | - | protein coding gene | homeobox A13 | |
Cpgi17439 | 6 | 1941 | CpG island | CpG island 17439 | ||
Tssr61032 | 6 | 13 | - | TSS region | transcription start site region 61032 | |
Tssr61033 | 6 | 15 | - | TSS region | transcription start site region 61033 | |
Gm27280 | 6 | 58 | + | unclassified non-coding RNA gene | predicted gene, 27280 | |
Gm27985 | 6 | 377 | + | unclassified non-coding RNA gene | predicted gene, 27985 | |
Hottip | 6 | 4828 | + | lincRNA gene | Hoxa distal transcript antisense RNA | |
Gm27383 | 6 | 360 | + | unclassified non-coding RNA gene | predicted gene, 27383 | |
Gm27866 | 6 | 170 | + | unclassified non-coding RNA gene | predicted gene, 27866 | |
Cpgi17440 | 6 | 156 | CpG island | CpG island 17440 | ||
Cpgi17441 | 6 | 378 | CpG island | CpG island 17441 | ||
Tssr1848 | 6 | 5 | + | TSS region | transcription start site region 1848 | |
Cpgi17442 | 6 | 569 | CpG island | CpG island 17442 | ||
Gm44294 | 6 | 727 | + | unclassified gene | predicted gene, 44294 | |
Cpgi17443 | 6 | 577 | CpG island | CpG island 17443 | ||
Evx1os | 6 | 6443 | - | antisense lncRNA gene | even skipped homeotic gene 1, opposite strand | |
Cpgi17444 | 6 | 521 | CpG island | CpG island 17444 | ||
Cpgi17445 | 6 | 1552 | CpG island | CpG island 17445 | ||
Tssr56521 | 6 | 15 | + | TSS region | transcription start site region 56521 | |
Tssr61034 | 6 | 12 | - | TSS region | transcription start site region 61034 | |
Evx1 | 6 | 4880 | + | protein coding gene | even-skipped homeobox 1 | |
Tssr56522 | 6 | 11 | + | TSS region | transcription start site region 56522 | |
Cpgi17446 | 6 | 416 | CpG island | CpG island 17446 | ||
Cpgi17447 | 6 | 1534 | CpG island | CpG island 17447 | ||
Cpgi17448 | 6 | 178 | CpG island | CpG island 17448 | ||
Gm8129 | 6 | 212 | - | pseudogene | predicted pseudogene 8129 | |
Tssr61035 | 6 | 7 | - | TSS region | transcription start site region 61035 | |
Gm15054 | 6 | 280 | - | pseudogene | predicted gene 15054 | |
Tssr56523 | 6 | 5 | + | TSS region | transcription start site region 56523 | |
Igf1sl1 | 6 | -63993554 | QTL | IGF-1 serum levels 1 |