Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:52068242-52168891

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38 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr56494 6 52079133 to 52079168 35 + TSS region transcription start site region 56494
Tssr56495 6 52102936 to 52102955 19 + TSS region transcription start site region 56495
Halr1 6 52102949 to 52113684 10735 + lincRNA gene Hoxa adjacent long noncoding RNA 1
Tssr56496 6 52102961 to 52102988 27 + TSS region transcription start site region 56496
Tssr56497 6 52103963 to 52103974 11 + TSS region transcription start site region 56497
Tssr56498 6 52103975 to 52103980 5 + TSS region transcription start site region 56498
Rps8-ps3 6 52118242 to 52118891 649 + pseudogene ribosomal protein S8, pseudogene 3
Tssr1844 6 52118401 to 52118402 1 + TSS region transcription start site region 1844
Rps19-ps14 6 52131778 to 52132046 268 - pseudogene ribosomal protein S19, pseudogene 14
Hoxa1 6 52155590 to 52158317 2727 - protein coding gene homeobox A1
Cpgi17409 6 52156763 to 52157052 289 CpG island CpG island 17409
Cpgi17410 6 52157736 to 52159188 1452 CpG island CpG island 17410
Tssr60974 6 52158292 to 52158324 32 - TSS region transcription start site region 60974
Tssr56499 6 52158406 to 52158423 17 + TSS region transcription start site region 56499
Tssr56500 6 52158428 to 52158456 28 + TSS region transcription start site region 56500
Gm27867 6 52158432 to 52158556 124 + unclassified non-coding RNA gene predicted gene, 27867
Tssr56501 6 52158465 to 52158484 19 + TSS region transcription start site region 56501
Hotairm1 6 52158524 to 52162020 3496 + antisense lncRNA gene Hoxa transcript antisense RNA, myeloid-specific 1
Cpgi17411 6 52160588 to 52160873 285 CpG island CpG island 17411
Gm27861 6 52161042 to 52161255 213 + unclassified non-coding RNA gene predicted gene, 27861
D6Mit93 6 52161713 to 52161848 135 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 93
Gm27868 6 52162010 to 52162111 101 + unclassified non-coding RNA gene predicted gene, 27868
Gm27477 6 52162125 to 52162267 142 + unclassified non-coding RNA gene predicted gene, 27477
Hoxa2 6 52162417 to 52164831 2414 - protein coding gene homeobox A2
Gm28308 6 52163359 to 52213339 49980 - protein coding gene predicted gene 28308
Cpgi17412 6 52164154 to 52164650 496 CpG island CpG island 17412
Tssr60975 6 52164448 to 52164464 16 - TSS region transcription start site region 60975
Tssr60976 6 52164473 to 52164490 17 - TSS region transcription start site region 60976
Tssr60977 6 52164538 to 52164549 11 - TSS region transcription start site region 60977
Tssr60978 6 52164822 to 52164829 7 - TSS region transcription start site region 60978
Cpgi17413 6 52165039 to 52165270 231 CpG island CpG island 17413
Cpgi17414 6 52165648 to 52166045 397 CpG island CpG island 17414
Hoxaas2 6 52165674 to 52169451 3777 + lncRNA gene Hoxa cluster antisense RNA 2
Tssr56502 6 52165703 to 52165715 12 + TSS region transcription start site region 56502
Gm46960 6 52166112 to 52166790 678 - lncRNA gene predicted gene, 46960
Tssr56503 6 52166517 to 52166524 7 + TSS region transcription start site region 56503
Cpgi17415 6 52168592 to 52169076 484 CpG island CpG island 17415
Igf1sl1 6 116155267 to 52161713 -63993554 QTL IGF-1 serum levels 1