Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:51588697-52158709

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63 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Snx10 6 51523902 to 51590679 66777 + protein coding gene sorting nexin 10
Tssr56484 6 51589077 to 51589094 17 + TSS region transcription start site region 56484
Tssr56485 6 51589353 to 51589395 42 + TSS region transcription start site region 56485
Tssr56486 6 51589997 to 51590000 3 + TSS region transcription start site region 56486
Tssr56487 6 51590777 to 51590782 5 + TSS region transcription start site region 56487
Tssr60952 6 51592288 to 51592314 26 - TSS region transcription start site region 60952
Cpgi17404 6 51592291 to 51593152 861 CpG island CpG island 17404
Tssr56488 6 51597625 to 51597638 13 + TSS region transcription start site region 56488
Tssr56489 6 51597739 to 51597753 14 + TSS region transcription start site region 56489
Tssr56490 6 51597759 to 51597771 12 + TSS region transcription start site region 56490
Tssr56491 6 51598917 to 51598930 13 + TSS region transcription start site region 56491
Tssr56492 6 51598932 to 51598961 29 + TSS region transcription start site region 56492
Cpgi17405 6 51612336 to 51613176 840 CpG island CpG island 17405
Cpgi17406 6 51613880 to 51614269 389 CpG island CpG island 17406
Gm22914 6 51621632 to 51621708 76 + miRNA gene predicted gene, 22914
Cpgi17407 6 51650068 to 51650263 195 CpG island CpG island 17407
Tssr60953 6 51681941 to 51681944 3 - TSS region transcription start site region 60953
Gm38811 6 51694970 to 51702031 7061 - lincRNA gene predicted gene, 38811
Tssr60954 6 51848676 to 51848681 5 - TSS region transcription start site region 60954
Skap2 6 51859165 to 52012549 153384 - protein coding gene src family associated phosphoprotein 2
Tssr60955 6 51864350 to 51864392 42 - TSS region transcription start site region 60955
Tssr60956 6 51871236 to 51871249 13 - TSS region transcription start site region 60956
Tssr60957 6 51873676 to 51873692 16 - TSS region transcription start site region 60957
Tssr60958 6 51873697 to 51873709 12 - TSS region transcription start site region 60958
Tssr60959 6 51881255 to 51881257 2 - TSS region transcription start site region 60959
Tssr60960 6 51888378 to 51888387 9 - TSS region transcription start site region 60960
Tssr60961 6 51895579 to 51895583 4 - TSS region transcription start site region 60961
Tssr60962 6 51915869 to 51915891 22 - TSS region transcription start site region 60962
Tssr60963 6 51920061 to 51920109 48 - TSS region transcription start site region 60963
Tssr60964 6 51920243 to 51920273 30 - TSS region transcription start site region 60964
Tssr60965 6 51920277 to 51920291 14 - TSS region transcription start site region 60965
Tssr60966 6 51920323 to 51920332 9 - TSS region transcription start site region 60966
Tssr60967 6 51921333 to 51921353 20 - TSS region transcription start site region 60967
Tssr60968 6 51987836 to 51987844 8 - TSS region transcription start site region 60968
Tssr60969 6 51990213 to 51990225 12 - TSS region transcription start site region 60969
Tssr60970 6 51990351 to 51990364 13 - TSS region transcription start site region 60970
Cpgi17408 6 52012002 to 52012952 950 CpG island CpG island 17408
Tssr60971 6 52012476 to 52012551 75 - TSS region transcription start site region 60971
Tssr60972 6 52012562 to 52012571 9 - TSS region transcription start site region 60972
Gm44077 6 52012601 to 52026986 14385 + lincRNA gene predicted gene, 44077
Tssr60973 6 52014075 to 52014093 18 - TSS region transcription start site region 60973
Tssr56493 6 52026619 to 52026628 9 + TSS region transcription start site region 56493
Myk103 6 52038698 to 52043588 4890 unclassified gene sequence flanking transgenic insert
D6Mit353 6 52065355 to 52065477 122 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 353
D6Mit353.1 6 52065469 to 52065585 116 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 353.1
Tssr56494 6 52079133 to 52079168 35 + TSS region transcription start site region 56494
Tssr56495 6 52102936 to 52102955 19 + TSS region transcription start site region 56495
Halr1 6 52102949 to 52113684 10735 + lincRNA gene Hoxa adjacent long noncoding RNA 1
Tssr56496 6 52102961 to 52102988 27 + TSS region transcription start site region 56496
Tssr56497 6 52103963 to 52103974 11 + TSS region transcription start site region 56497
Tssr56498 6 52103975 to 52103980 5 + TSS region transcription start site region 56498
Rps8-ps3 6 52118242 to 52118891 649 + pseudogene ribosomal protein S8, pseudogene 3
Tssr1844 6 52118401 to 52118402 1 + TSS region transcription start site region 1844
Rps19-ps14 6 52131778 to 52132046 268 - pseudogene ribosomal protein S19, pseudogene 14
Hoxa1 6 52155590 to 52158317 2727 - protein coding gene homeobox A1
Cpgi17409 6 52156763 to 52157052 289 CpG island CpG island 17409
Cpgi17410 6 52157736 to 52159188 1452 CpG island CpG island 17410
Tssr60974 6 52158292 to 52158324 32 - TSS region transcription start site region 60974
Tssr56499 6 52158406 to 52158423 17 + TSS region transcription start site region 56499
Tssr56500 6 52158428 to 52158456 28 + TSS region transcription start site region 56500
Gm27867 6 52158432 to 52158556 124 + unclassified non-coding RNA gene predicted gene, 27867
Tssr56501 6 52158465 to 52158484 19 + TSS region transcription start site region 56501
Hotairm1 6 52158524 to 52162020 3496 + antisense lncRNA gene Hoxa transcript antisense RNA, myeloid-specific 1