Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:5150877-6300888

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ppp1r9a 6 4902917 to 5165661 262744 + protein coding gene protein phosphatase 1, regulatory subunit 9A
Gm46949 6 5151237 to 5153490 2253 - lncRNA gene predicted gene, 46949
Tssr54852 6 5163673 to 5163684 11 + TSS region transcription start site region 54852
Pon1 6 5168090 to 5193946 25856 - protein coding gene paraoxonase 1
Tssr59736 6 5178284 to 5178291 7 - TSS region transcription start site region 59736
Tssr59737 6 5182784 to 5182788 4 - TSS region transcription start site region 59737
Tssr59738 6 5188748 to 5188768 20 - TSS region transcription start site region 59738
Tssr59739 6 5193757 to 5193809 52 - TSS region transcription start site region 59739
Tssr59740 6 5193817 to 5193831 14 - TSS region transcription start site region 59740
Gm44250 6 5216258 to 5220486 4228 - unclassified gene predicted gene, 44250
Tssr59741 6 5220487 to 5220501 14 - TSS region transcription start site region 59741
Pon3 6 5220852 to 5256242 35390 - protein coding gene paraoxonase 3
Tssr59742 6 5220930 to 5220949 19 - TSS region transcription start site region 59742
Tssr59743 6 5254512 to 5254521 9 - TSS region transcription start site region 59743
Tssr59744 6 5256226 to 5256278 52 - TSS region transcription start site region 59744
Tssr59745 6 5256281 to 5256288 7 - TSS region transcription start site region 59745
Pon2 6 5264620 to 5298373 33753 - protein coding gene paraoxonase 2
Gm44424 6 5279655 to 5281480 1825 + unclassified gene predicted gene, 44424
Cpgi17129 6 5297941 to 5298556 615 CpG island CpG island 17129
Tssr59746 6 5298301 to 5298377 76 - TSS region transcription start site region 59746
Tssr59747 6 5298397 to 5298408 11 - TSS region transcription start site region 59747
Tssr59748 6 5298462 to 5298476 14 - TSS region transcription start site region 59748
Tssr59749 6 5325268 to 5325294 26 - TSS region transcription start site region 59749
Gm38762 6 5362315 to 5372988 10673 + lncRNA gene predicted gene, 38762
D6Mit166 6 5367489 to 5367588 99 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 166
Asb4 6 5383386 to 5433022 49636 + protein coding gene ankyrin repeat and SOCS box-containing 4
Tssr54853 6 5390289 to 5390296 7 + TSS region transcription start site region 54853
Tssr54854 6 5390343 to 5390365 22 + TSS region transcription start site region 54854
Tssr54855 6 5390387 to 5390423 36 + TSS region transcription start site region 54855
Tssr54856 6 5390439 to 5390452 13 + TSS region transcription start site region 54856
Tssr54857 6 5390501 to 5390517 16 + TSS region transcription start site region 54857
Tssr54858 6 5390518 to 5390546 28 + TSS region transcription start site region 54858
Tssr54859 6 5390703 to 5390716 13 + TSS region transcription start site region 54859
Tssr59750 6 5398326 to 5398365 39 - TSS region transcription start site region 59750
Tssr54860 6 5398399 to 5398411 12 + TSS region transcription start site region 54860
Tssr54861 6 5398421 to 5398432 11 + TSS region transcription start site region 54861
Cpgi17130 6 5423388 to 5423828 440 CpG island CpG island 17130
Pdk4 6 5483351 to 5496278 12927 - protein coding gene pyruvate dehydrogenase kinase, isoenzyme 4
Tssr59751 6 5484156 to 5484173 17 - TSS region transcription start site region 59751
Tssr59752 6 5491678 to 5491684 6 - TSS region transcription start site region 59752
Tssr59753 6 5495841 to 5495852 11 - TSS region transcription start site region 59753
Tssr59754 6 5495874 to 5495881 7 - TSS region transcription start site region 59754
Cpgi17131 6 5495898 to 5496640 742 CpG island CpG island 17131
Tssr59755 6 5495919 to 5495932 13 - TSS region transcription start site region 59755
Tssr59756 6 5496285 to 5496290 5 - TSS region transcription start site region 59756
Tssr59757 6 5496296 to 5496316 20 - TSS region transcription start site region 59757
Tssr1775 6 5511137 to 5511144 7 + TSS region transcription start site region 1775
Tssr54862 6 5511148 to 5511176 28 + TSS region transcription start site region 54862
D6Mit179 6 5540393 to 5540498 105 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 179
Gm34470 6 5563663 to 5570318 6655 + lncRNA gene predicted gene, 34470
Gm46983 6 5643747 to 5645853 2106 + lncRNA gene predicted gene, 46983
D6Mit296 6 5712950 to 5713049 99 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 296
Cpgi17132 6 5725573 to 5726164 591 CpG island CpG island 17132
Dync1i1 6 5725639 to 6028039 302400 + protein coding gene dynein cytoplasmic 1 intermediate chain 1
Tssr54863 6 5725738 to 5725801 63 + TSS region transcription start site region 54863
Tssr54864 6 5725812 to 5725858 46 + TSS region transcription start site region 54864
Tssr54865 6 5725877 to 5725888 11 + TSS region transcription start site region 54865
Tssr54866 6 5786930 to 5786933 3 + TSS region transcription start site region 54866
Tssr54867 6 5789540 to 5789543 3 + TSS region transcription start site region 54867
Gm34527 6 5809337 to 5822019 12682 - lncRNA gene predicted gene, 34527
Tssr59758 6 5819801 to 5819824 23 - TSS region transcription start site region 59758
Tssr59759 6 5819826 to 5819836 10 - TSS region transcription start site region 59759
Cpgi17133 6 5860275 to 5860588 313 CpG island CpG island 17133
Tssr54868 6 5959289 to 5959291 2 + TSS region transcription start site region 54868
1700019G24Rik 6 5963909 to 5977393 13484 - antisense lncRNA gene RIKEN cDNA 1700019G24 gene
Tssr59760 6 5977347 to 5977393 46 - TSS region transcription start site region 59760
Tssr59761 6 5977396 to 5977408 12 - TSS region transcription start site region 59761
Cpgi17134 6 6005660 to 6006458 798 CpG island CpG island 17134
Slc25a13 6 6041218 to 6217173 175955 - protein coding gene solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13
Tssr59762 6 6056247 to 6056251 4 - TSS region transcription start site region 59762
D6Ertd439e 6 6068200 to 6068448 248 DNA segment DNA segment, Chr 6, ERATO Doi 439, expressed
Tssr59763 6 6104778 to 6104783 5 - TSS region transcription start site region 59763
Tssr54869 6 6118353 to 6118354 1 + TSS region transcription start site region 54869
Tssr59764 6 6169775 to 6169778 3 - TSS region transcription start site region 59764
Tssr59765 6 6215350 to 6215362 12 - TSS region transcription start site region 59765
Cpgi17135 6 6216660 to 6217435 775 CpG island CpG island 17135
Tssr59766 6 6217023 to 6217125 102 - TSS region transcription start site region 59766
Tssr59767 6 6217128 to 6217149 21 - TSS region transcription start site region 59767
Tel-rs3 6 6244322 to 6244585 263 unclassified gene telomere, related sequence 3
Gm20619 6 6248659 to 6377422 128763 + lincRNA gene predicted gene 20619
Tssr54870 6 6248675 to 6248693 18 + TSS region transcription start site region 54870
Tssr54871 6 6299428 to 6299438 10 + TSS region transcription start site region 54871
Tssr54872 6 6299439 to 6299453 14 + TSS region transcription start site region 54872
Tssr54873 6 6299461 to 6299475 14 + TSS region transcription start site region 54873