Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:51395414-52985691

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359 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
0610033M10Rik 6 51400966 to 51402219 1253 - lincRNA gene RIKEN cDNA 0610033M10 gene
Cpgi17400 6 51422187 to 51422473 286 CpG island CpG island 17400
Cpgi17401 6 51432593 to 51433535 942 CpG island CpG island 17401
Tssr56435 6 51432663 to 51432674 11 + TSS region transcription start site region 56435
Nfe2l3 6 51432670 to 51458768 26098 + protein coding gene nuclear factor, erythroid derived 2, like 3
Tssr56436 6 51432678 to 51432784 106 + TSS region transcription start site region 56436
Tssr56437 6 51432823 to 51432834 11 + TSS region transcription start site region 56437
Hnrnpa2b1 6 51460932 to 51469894 8962 - protein coding gene heterogeneous nuclear ribonucleoprotein A2/B1
Tssr56438 6 51463424 to 51463461 37 + TSS region transcription start site region 56438
Tssr60935 6 51463483 to 51463499 16 - TSS region transcription start site region 60935
Tssr56439 6 51464418 to 51464429 11 + TSS region transcription start site region 56439
Tssr56440 6 51464438 to 51464448 10 + TSS region transcription start site region 56440
Tssr60936 6 51464446 to 51464450 4 - TSS region transcription start site region 60936
Tssr56441 6 51464450 to 51464460 10 + TSS region transcription start site region 56441
Tssr60937 6 51464453 to 51464471 18 - TSS region transcription start site region 60937
Tssr56442 6 51464466 to 51464512 46 + TSS region transcription start site region 56442
Tssr60938 6 51464495 to 51464515 20 - TSS region transcription start site region 60938
Tssr1843 6 51465177 to 51465201 24 + TSS region transcription start site region 1843
Tssr60939 6 51466219 to 51466225 6 - TSS region transcription start site region 60939
Tssr60940 6 51466377 to 51466404 27 - TSS region transcription start site region 60940
Tssr60941 6 51466622 to 51466688 66 - TSS region transcription start site region 60941
Tssr60942 6 51466831 to 51466835 4 - TSS region transcription start site region 60942
Tssr60943 6 51466929 to 51466945 16 - TSS region transcription start site region 60943
Tssr60944 6 51466951 to 51466992 41 - TSS region transcription start site region 60944
Tssr60945 6 51467819 to 51467821 2 - TSS region transcription start site region 60945
Tssr60946 6 51468451 to 51468469 18 - TSS region transcription start site region 60946
Cpgi17402 6 51468845 to 51471391 2546 CpG island CpG island 17402
Tssr56443 6 51469428 to 51469462 34 + TSS region transcription start site region 56443
Tssr60947 6 51469836 to 51469854 18 - TSS region transcription start site region 60947
Tssr60948 6 51469869 to 51469877 8 - TSS region transcription start site region 60948
Tssr56444 6 51470183 to 51470217 34 + TSS region transcription start site region 56444
Tssr56445 6 51470339 to 51470350 11 + TSS region transcription start site region 56445
Tssr56446 6 51470405 to 51470416 11 + TSS region transcription start site region 56446
Tssr56447 6 51470421 to 51470430 9 + TSS region transcription start site region 56447
Tssr56448 6 51470433 to 51470478 45 + TSS region transcription start site region 56448
Cbx3 6 51470447 to 51483704 13257 + protein coding gene chromobox 3
Tssr56449 6 51470494 to 51470497 3 + TSS region transcription start site region 56449
Tssr56450 6 51470510 to 51470528 18 + TSS region transcription start site region 56450
Tssr56451 6 51470547 to 51470561 14 + TSS region transcription start site region 56451
Tssr56452 6 51470608 to 51470620 12 + TSS region transcription start site region 56452
Tssr56453 6 51470633 to 51470673 40 + TSS region transcription start site region 56453
Tssr60949 6 51471029 to 51471069 40 - TSS region transcription start site region 60949
Tssr56454 6 51477475 to 51477478 3 + TSS region transcription start site region 56454
Tssr56455 6 51482992 to 51483001 9 + TSS region transcription start site region 56455
Cpgi17403 6 51523709 to 51524783 1074 CpG island CpG island 17403
Snx10 6 51523902 to 51590679 66777 + protein coding gene sorting nexin 10
Tssr56456 6 51523924 to 51523941 17 + TSS region transcription start site region 56456
Tssr56457 6 51523945 to 51523976 31 + TSS region transcription start site region 56457
Tssr56458 6 51523979 to 51523997 18 + TSS region transcription start site region 56458
Tssr56459 6 51524728 to 51524743 15 + TSS region transcription start site region 56459
Tssr56460 6 51525512 to 51525516 4 + TSS region transcription start site region 56460
Tssr56461 6 51531373 to 51531377 4 + TSS region transcription start site region 56461
Tssr56462 6 51537429 to 51537436 7 + TSS region transcription start site region 56462
Tssr56463 6 51537437 to 51537475 38 + TSS region transcription start site region 56463
Tssr56464 6 51544477 to 51544480 3 + TSS region transcription start site region 56464
Tssr56465 6 51544513 to 51544578 65 + TSS region transcription start site region 56465
Tssr56466 6 51544587 to 51544609 22 + TSS region transcription start site region 56466
Tssr56467 6 51544621 to 51544630 9 + TSS region transcription start site region 56467
Tssr56468 6 51544650 to 51544661 11 + TSS region transcription start site region 56468
Tssr56469 6 51544667 to 51544687 20 + TSS region transcription start site region 56469
Tssr56470 6 51544691 to 51544706 15 + TSS region transcription start site region 56470
Tssr56471 6 51544714 to 51544732 18 + TSS region transcription start site region 56471
Tssr60950 6 51545282 to 51545322 40 - TSS region transcription start site region 60950
Tssr56472 6 51545507 to 51545529 22 + TSS region transcription start site region 56472
Tssr56473 6 51557514 to 51557544 30 + TSS region transcription start site region 56473
Tssr56474 6 51569946 to 51569995 49 + TSS region transcription start site region 56474
Tssr56475 6 51575786 to 51575804 18 + TSS region transcription start site region 56475
Tssr56476 6 51575811 to 51575818 7 + TSS region transcription start site region 56476
Tssr56477 6 51575827 to 51575839 12 + TSS region transcription start site region 56477
Tssr56478 6 51575870 to 51575892 22 + TSS region transcription start site region 56478
Tssr60951 6 51581670 to 51581712 42 - TSS region transcription start site region 60951
Tssr56479 6 51584322 to 51584333 11 + TSS region transcription start site region 56479
Tssr56480 6 51584487 to 51584507 20 + TSS region transcription start site region 56480
Tssr56481 6 51584525 to 51584543 18 + TSS region transcription start site region 56481
Tssr56482 6 51584626 to 51584637 11 + TSS region transcription start site region 56482
Tssr56483 6 51588206 to 51588216 10 + TSS region transcription start site region 56483
Tssr56484 6 51589077 to 51589094 17 + TSS region transcription start site region 56484
Tssr56485 6 51589353 to 51589395 42 + TSS region transcription start site region 56485
Tssr56486 6 51589997 to 51590000 3 + TSS region transcription start site region 56486
Tssr56487 6 51590777 to 51590782 5 + TSS region transcription start site region 56487
Tssr60952 6 51592288 to 51592314 26 - TSS region transcription start site region 60952
Cpgi17404 6 51592291 to 51593152 861 CpG island CpG island 17404
Tssr56488 6 51597625 to 51597638 13 + TSS region transcription start site region 56488
Tssr56489 6 51597739 to 51597753 14 + TSS region transcription start site region 56489
Tssr56490 6 51597759 to 51597771 12 + TSS region transcription start site region 56490
Tssr56491 6 51598917 to 51598930 13 + TSS region transcription start site region 56491
Tssr56492 6 51598932 to 51598961 29 + TSS region transcription start site region 56492
Cpgi17405 6 51612336 to 51613176 840 CpG island CpG island 17405
Cpgi17406 6 51613880 to 51614269 389 CpG island CpG island 17406
Gm22914 6 51621632 to 51621708 76 + miRNA gene predicted gene, 22914
Cpgi17407 6 51650068 to 51650263 195 CpG island CpG island 17407
Tssr60953 6 51681941 to 51681944 3 - TSS region transcription start site region 60953
Gm38811 6 51694970 to 51702031 7061 - lincRNA gene predicted gene, 38811
Tssr60954 6 51848676 to 51848681 5 - TSS region transcription start site region 60954
Skap2 6 51859165 to 52012549 153384 - protein coding gene src family associated phosphoprotein 2
Tssr60955 6 51864350 to 51864392 42 - TSS region transcription start site region 60955
Tssr60956 6 51871236 to 51871249 13 - TSS region transcription start site region 60956
Tssr60957 6 51873676 to 51873692 16 - TSS region transcription start site region 60957
Tssr60958 6 51873697 to 51873709 12 - TSS region transcription start site region 60958
Tssr60959 6 51881255 to 51881257 2 - TSS region transcription start site region 60959
Tssr60960 6 51888378 to 51888387 9 - TSS region transcription start site region 60960
Tssr60961 6 51895579 to 51895583 4 - TSS region transcription start site region 60961
Tssr60962 6 51915869 to 51915891 22 - TSS region transcription start site region 60962
Tssr60963 6 51920061 to 51920109 48 - TSS region transcription start site region 60963
Tssr60964 6 51920243 to 51920273 30 - TSS region transcription start site region 60964
Tssr60965 6 51920277 to 51920291 14 - TSS region transcription start site region 60965
Tssr60966 6 51920323 to 51920332 9 - TSS region transcription start site region 60966
Tssr60967 6 51921333 to 51921353 20 - TSS region transcription start site region 60967
Tssr60968 6 51987836 to 51987844 8 - TSS region transcription start site region 60968
Tssr60969 6 51990213 to 51990225 12 - TSS region transcription start site region 60969
Tssr60970 6 51990351 to 51990364 13 - TSS region transcription start site region 60970
Cpgi17408 6 52012002 to 52012952 950 CpG island CpG island 17408
Tssr60971 6 52012476 to 52012551 75 - TSS region transcription start site region 60971
Tssr60972 6 52012562 to 52012571 9 - TSS region transcription start site region 60972
Gm44077 6 52012601 to 52026986 14385 + lincRNA gene predicted gene, 44077
Tssr60973 6 52014075 to 52014093 18 - TSS region transcription start site region 60973
Tssr56493 6 52026619 to 52026628 9 + TSS region transcription start site region 56493
Myk103 6 52038698 to 52043588 4890 unclassified gene sequence flanking transgenic insert
D6Mit353 6 52065355 to 52065477 122 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 353
D6Mit353.1 6 52065469 to 52065585 116 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 353.1
Tssr56494 6 52079133 to 52079168 35 + TSS region transcription start site region 56494
Tssr56495 6 52102936 to 52102955 19 + TSS region transcription start site region 56495
Halr1 6 52102949 to 52113684 10735 + lincRNA gene Hoxa adjacent long noncoding RNA 1
Tssr56496 6 52102961 to 52102988 27 + TSS region transcription start site region 56496
Tssr56497 6 52103963 to 52103974 11 + TSS region transcription start site region 56497
Tssr56498 6 52103975 to 52103980 5 + TSS region transcription start site region 56498
Rps8-ps3 6 52118242 to 52118891 649 + pseudogene ribosomal protein S8, pseudogene 3
Tssr1844 6 52118401 to 52118402 1 + TSS region transcription start site region 1844
Rps19-ps14 6 52131778 to 52132046 268 - pseudogene ribosomal protein S19, pseudogene 14
Hoxa1 6 52155590 to 52158317 2727 - protein coding gene homeobox A1
Cpgi17409 6 52156763 to 52157052 289 CpG island CpG island 17409
Cpgi17410 6 52157736 to 52159188 1452 CpG island CpG island 17410
Tssr60974 6 52158292 to 52158324 32 - TSS region transcription start site region 60974
Tssr56499 6 52158406 to 52158423 17 + TSS region transcription start site region 56499
Tssr56500 6 52158428 to 52158456 28 + TSS region transcription start site region 56500
Gm27867 6 52158432 to 52158556 124 + unclassified non-coding RNA gene predicted gene, 27867
Tssr56501 6 52158465 to 52158484 19 + TSS region transcription start site region 56501
Hotairm1 6 52158524 to 52162020 3496 + antisense lncRNA gene Hoxa transcript antisense RNA, myeloid-specific 1
Cpgi17411 6 52160588 to 52160873 285 CpG island CpG island 17411
Gm27861 6 52161042 to 52161255 213 + unclassified non-coding RNA gene predicted gene, 27861
D6Mit93 6 52161713 to 52161848 135 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 93
Gm27868 6 52162010 to 52162111 101 + unclassified non-coding RNA gene predicted gene, 27868
Gm27477 6 52162125 to 52162267 142 + unclassified non-coding RNA gene predicted gene, 27477
Hoxa2 6 52162417 to 52164831 2414 - protein coding gene homeobox A2
Gm28308 6 52163359 to 52213339 49980 - protein coding gene predicted gene 28308
Cpgi17412 6 52164154 to 52164650 496 CpG island CpG island 17412
Tssr60975 6 52164448 to 52164464 16 - TSS region transcription start site region 60975
Tssr60976 6 52164473 to 52164490 17 - TSS region transcription start site region 60976
Tssr60977 6 52164538 to 52164549 11 - TSS region transcription start site region 60977
Tssr60978 6 52164822 to 52164829 7 - TSS region transcription start site region 60978
Cpgi17413 6 52165039 to 52165270 231 CpG island CpG island 17413
Cpgi17414 6 52165648 to 52166045 397 CpG island CpG island 17414
Hoxaas2 6 52165674 to 52169451 3777 + lncRNA gene Hoxa cluster antisense RNA 2
Tssr56502 6 52165703 to 52165715 12 + TSS region transcription start site region 56502
Gm46960 6 52166112 to 52166790 678 - lncRNA gene predicted gene, 46960
Tssr56503 6 52166517 to 52166524 7 + TSS region transcription start site region 56503
Cpgi17415 6 52168592 to 52169076 484 CpG island CpG island 17415
Hoxa3 6 52169062 to 52213067 44005 - protein coding gene homeobox A3
Cpgi17416 6 52170010 to 52171067 1057 CpG island CpG island 17416
Cpgi17417 6 52172360 to 52172928 568 CpG island CpG island 17417
Tssr56504 6 52172810 to 52172825 15 + TSS region transcription start site region 56504
Tssr56505 6 52172875 to 52172887 12 + TSS region transcription start site region 56505
Gm15050 6 52172881 to 52174059 1178 + antisense lncRNA gene predicted gene 15050
Tssr56506 6 52172947 to 52172951 4 + TSS region transcription start site region 56506
Tssr56507 6 52175174 to 52175220 46 + TSS region transcription start site region 56507
Cpgi17418 6 52175193 to 52176195 1002 CpG island CpG island 17418
Tssr60979 6 52175955 to 52175995 40 - TSS region transcription start site region 60979
Tssr56508 6 52177152 to 52177156 4 + TSS region transcription start site region 56508
Cpgi17419 6 52177194 to 52177641 447 CpG island CpG island 17419
5730596B20Rik 6 52177498 to 52180851 3353 + protein coding gene RIKEN cDNA 5730596B20 gene
Gm29430 6 52183110 to 52189925 6815 + antisense lncRNA gene predicted gene 29430
Tssr60980 6 52183828 to 52183855 27 - TSS region transcription start site region 60980
Tssr60981 6 52184127 to 52184151 24 - TSS region transcription start site region 60981
Hoxa4 6 52189687 to 52191703 2016 - protein coding gene homeobox A4
Cpgi17420 6 52190414 to 52190691 277 CpG island CpG island 17420
Tssr56509 6 52190444 to 52190448 4 + TSS region transcription start site region 56509
Tssr60982 6 52190591 to 52190606 15 - TSS region transcription start site region 60982
Cpgi17421 6 52190828 to 52192473 1645 CpG island CpG island 17421
Tssr60983 6 52191262 to 52191285 23 - TSS region transcription start site region 60983
Tssr60984 6 52191318 to 52191342 24 - TSS region transcription start site region 60984
Tssr60985 6 52191347 to 52191365 18 - TSS region transcription start site region 60985
Tssr60986 6 52191383 to 52191393 10 - TSS region transcription start site region 60986
Tssr60987 6 52191618 to 52191645 27 - TSS region transcription start site region 60987
Tssr60988 6 52191675 to 52191685 10 - TSS region transcription start site region 60988
Tssr60989 6 52191695 to 52191716 21 - TSS region transcription start site region 60989
Cpgi17422 6 52200316 to 52200635 319 CpG island CpG island 17422
Tssr60990 6 52200946 to 52200973 27 - TSS region transcription start site region 60990
Hoxaas3 6 52201124 to 52213597 12473 + antisense lncRNA gene Hoxa cluster antisense RNA 3
Tssr56510 6 52201198 to 52201244 46 + TSS region transcription start site region 56510
Hoxa5 6 52201754 to 52204587 2833 - protein coding gene homeobox A5
Cpgi17423 6 52203237 to 52204872 1635 CpG island CpG island 17423
Tssr60991 6 52204239 to 52204250 11 - TSS region transcription start site region 60991
Tssr60992 6 52204251 to 52204262 11 - TSS region transcription start site region 60992
Tssr60993 6 52204315 to 52204338 23 - TSS region transcription start site region 60993
Tssr60994 6 52204387 to 52204408 21 - TSS region transcription start site region 60994
Tssr60995 6 52204415 to 52204463 48 - TSS region transcription start site region 60995
Cpgi17424 6 52205644 to 52206728 1084 CpG island CpG island 17424
Hoxa6 6 52206365 to 52208624 2259 - protein coding gene homeobox A6
Cpgi17425 6 52208173 to 52209145 972 CpG island CpG island 17425
Tssr60996 6 52208595 to 52208604 9 - TSS region transcription start site region 60996