Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:50520003-51359382

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm31279 6 50501559 to 50538015 36456 + lncRNA gene predicted gene, 31279
Gm26289 6 50539904 to 50540034 130 - snoRNA gene predicted gene, 26289
Gm38806 6 50540757 to 50542978 2221 + lncRNA gene predicted gene, 38806
Cycs 6 50562563 to 50566474 3911 - protein coding gene cytochrome c, somatic
Cpgi17392 6 50566025 to 50567067 1042 CpG island CpG island 17392
Tssr60918 6 50566535 to 50566558 23 - TSS region transcription start site region 60918
Tssr60919 6 50566563 to 50566577 14 - TSS region transcription start site region 60919
5430402O13Rik 6 50566643 to 50594865 28222 + antisense lncRNA gene RIKEN cDNA 5430402O13 gene
Tssr56423 6 50566720 to 50566750 30 + TSS region transcription start site region 56423
Mir6371 6 50572398 to 50572508 110 + miRNA gene microRNA 6371
4921507P07Rik 6 50573302 to 50596632 23330 - protein coding gene RIKEN cDNA 4921507P07 gene
Tssr60920 6 50574416 to 50574429 13 - TSS region transcription start site region 60920
Cpgi17393 6 50596260 to 50597094 834 CpG island CpG island 17393
Tssr60921 6 50596564 to 50596573 9 - TSS region transcription start site region 60921
Tssr60922 6 50596578 to 50596612 34 - TSS region transcription start site region 60922
Tssr60923 6 50596624 to 50596639 15 - TSS region transcription start site region 60923
Gm44054 6 50599869 to 50600240 371 + pseudogene predicted gene, 44054
Gm38807 6 50601538 to 50605277 3739 - lncRNA gene predicted gene, 38807
Tssr56424 6 50608420 to 50608428 8 + TSS region transcription start site region 56424
Gm4782 6 50608637 to 50610682 2045 + pseudogene predicted gene 4782
Gm8035 6 50617849 to 50618535 686 - pseudogene predicted gene 8035
Gm8038 6 50619841 to 50621884 2043 - pseudogene predicted gene 8038
Gm8039 6 50625745 to 50626456 711 - pseudogene predicted gene 8039
Gm18765 6 50627680 to 50628339 659 - pseudogene predicted gene, 18765
Tssr60924 6 50631123 to 50631125 2 - TSS region transcription start site region 60924
Npvf 6 50650871 to 50654393 3522 - protein coding gene neuropeptide VF precursor
Tssr60925 6 50654438 to 50654448 10 - TSS region transcription start site region 60925
Gm38808 6 50659851 to 50679483 19632 - lncRNA gene predicted gene, 38808
D6Mit276 6 50713385 to 50713499 114 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 276
Gm3017 6 50746687 to 50747812 1125 - pseudogene predicted gene 3017
C530044C16Rik 6 50776115 to 50814894 38779 + lincRNA gene RIKEN cDNA C530044C16 gene
Gm44109 6 50799072 to 50803031 3959 - lincRNA gene predicted gene, 44109
Gm31455 6 50804265 to 50822292 18027 - lncRNA gene predicted gene, 31455
G930045G22Rik 6 50846713 to 50878077 31364 - lincRNA gene RIKEN cDNA G930045G22 gene
Hdlk 6 50864934 to 55556043 4691109 heritable phenotypic marker hypodactyly like
D6Mit119 6 50864934 to 50865047 113 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 119
Gm45922 6 50880887 to 50882620 1733 - lncRNA gene predicted gene, 45922
Cpgi17394 6 50890859 to 50891081 222 CpG island CpG island 17394
Tssr56425 6 50891297 to 50891305 8 + TSS region transcription start site region 56425
Lxw2 6 50895281 to 50895420 139 QTL lupus BXSB x NZW 2
Mom12 6 50895281 to 50895420 139 QTL Modifier of Min 12
D6Mit33 6 50895281 to 50895420 139 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 33
Gm31631 6 50900455 to 50908977 8522 - lncRNA gene predicted gene, 31631
Gm31579 6 50909770 to 50910735 965 + lncRNA gene predicted gene, 31579
Gm31686 6 50935003 to 50944382 9379 - lncRNA gene predicted gene, 31686
Gm44402 6 50967268 to 50967505 237 + pseudogene predicted gene, 44402
Gm38809 6 50973384 to 50990371 16987 - lncRNA gene predicted gene, 38809
Gm46959 6 50987400 to 51068011 80611 + lncRNA gene predicted gene, 46959
Gm31746 6 51032935 to 51061257 28322 - lncRNA gene predicted gene, 31746
Tssr60926 6 51059702 to 51059745 43 - TSS region transcription start site region 60926
D6Mit240 6 51077549 to 51077653 104 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 240
D6Mit240.1 6 51077688 to 51077801 113 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 240.1
Gm32190 6 51096515 to 51100672 4157 - lncRNA gene predicted gene, 32190
Gm32328 6 51124747 to 51166446 41699 - lncRNA gene predicted gene, 32328
Gm32246 6 51142007 to 51146083 4076 + lncRNA gene predicted gene, 32246
Gm38810 6 51154278 to 51154934 656 + lncRNA gene predicted gene, 38810
D6Mit275 6 51162079 to 51162203 124 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 275
D6Dcr9 6 51162097 to 51162200 103 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 9
Cpgi17395 6 51168742 to 51169197 455 CpG island CpG island 17395
Cpgi17396 6 51170109 to 51170340 231 CpG island CpG island 17396
Tssr56426 6 51171201 to 51171215 14 + TSS region transcription start site region 56426
Cpgi17397 6 51178562 to 51178782 220 CpG island CpG island 17397
Gm32403 6 51200919 to 51207351 6432 - lncRNA gene predicted gene, 32403
Gm38821 6 51222957 to 51280572 57615 - protein coding gene predicted gene, 38821
Mir148a 6 51269812 to 51269910 98 - miRNA gene microRNA 148a
Tssr60927 6 51269823 to 51269828 5 - TSS region transcription start site region 60927
Cpgi17398 6 51270229 to 51271430 1201 CpG island CpG island 17398
Tssr60928 6 51270870 to 51270889 19 - TSS region transcription start site region 60928
Tssr60929 6 51270896 to 51270941 45 - TSS region transcription start site region 60929
Tssr56427 6 51282889 to 51282892 3 + TSS region transcription start site region 56427
Gm32479 6 51283532 to 51287855 4323 - lincRNA gene predicted gene, 32479
Tssr60930 6 51320887 to 51320896 9 - TSS region transcription start site region 60930
Tssr60931 6 51320917 to 51320925 8 - TSS region transcription start site region 60931
Tssr60932 6 51320929 to 51320936 7 - TSS region transcription start site region 60932
Tssr60933 6 51320946 to 51320967 21 - TSS region transcription start site region 60933
Tssr56428 6 51326913 to 51326917 4 + TSS region transcription start site region 56428
Tssr56429 6 51329795 to 51329804 9 + TSS region transcription start site region 56429
Tssr56430 6 51329852 to 51329865 13 + TSS region transcription start site region 56430
Tssr56431 6 51329871 to 51329883 12 + TSS region transcription start site region 56431
Tssr56432 6 51329890 to 51329920 30 + TSS region transcription start site region 56432
BC022713 6 51330493 to 51333705 3212 unclassified gene cDNA sequence BC022713
Tssr56433 6 51330650 to 51330665 15 + TSS region transcription start site region 56433
Tssr56434 6 51330701 to 51330716 15 + TSS region transcription start site region 56434
Tssr60934 6 51346752 to 51346774 22 - TSS region transcription start site region 60934
Sndy1 6 145656013 to 50864934 -94791079 heritable phenotypic marker syndactyly 1