Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:50400745-50851456

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41 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Osbpl3 6 50293330 to 50456201 162871 - protein coding gene oxysterol binding protein-like 3
Tssr60914 6 50404907 to 50404920 13 - TSS region transcription start site region 60914
Cpgi17391 6 50455138 to 50456477 1339 CpG island CpG island 17391
Tssr60915 6 50456085 to 50456174 89 - TSS region transcription start site region 60915
Tssr60916 6 50456353 to 50456362 9 - TSS region transcription start site region 60916
Gm40372 6 50499549 to 50505724 6175 - lncRNA gene predicted gene, 40372
Gm31279 6 50501559 to 50538015 36456 + lncRNA gene predicted gene, 31279
Tssr60917 6 50505721 to 50505752 31 - TSS region transcription start site region 60917
Gm26289 6 50539904 to 50540034 130 - snoRNA gene predicted gene, 26289
Gm38806 6 50540757 to 50542978 2221 + lncRNA gene predicted gene, 38806
Cycs 6 50562563 to 50566474 3911 - protein coding gene cytochrome c, somatic
Cpgi17392 6 50566025 to 50567067 1042 CpG island CpG island 17392
Tssr60918 6 50566535 to 50566558 23 - TSS region transcription start site region 60918
Tssr60919 6 50566563 to 50566577 14 - TSS region transcription start site region 60919
5430402O13Rik 6 50566643 to 50594865 28222 + antisense lncRNA gene RIKEN cDNA 5430402O13 gene
Tssr56423 6 50566720 to 50566750 30 + TSS region transcription start site region 56423
Mir6371 6 50572398 to 50572508 110 + miRNA gene microRNA 6371
4921507P07Rik 6 50573302 to 50596632 23330 - protein coding gene RIKEN cDNA 4921507P07 gene
Tssr60920 6 50574416 to 50574429 13 - TSS region transcription start site region 60920
Cpgi17393 6 50596260 to 50597094 834 CpG island CpG island 17393
Tssr60921 6 50596564 to 50596573 9 - TSS region transcription start site region 60921
Tssr60922 6 50596578 to 50596612 34 - TSS region transcription start site region 60922
Tssr60923 6 50596624 to 50596639 15 - TSS region transcription start site region 60923
Gm44054 6 50599869 to 50600240 371 + pseudogene predicted gene, 44054
Gm38807 6 50601538 to 50605277 3739 - lncRNA gene predicted gene, 38807
Tssr56424 6 50608420 to 50608428 8 + TSS region transcription start site region 56424
Gm4782 6 50608637 to 50610682 2045 + pseudogene predicted gene 4782
Gm8035 6 50617849 to 50618535 686 - pseudogene predicted gene 8035
Gm8038 6 50619841 to 50621884 2043 - pseudogene predicted gene 8038
Gm8039 6 50625745 to 50626456 711 - pseudogene predicted gene 8039
Gm18765 6 50627680 to 50628339 659 - pseudogene predicted gene, 18765
Tssr60924 6 50631123 to 50631125 2 - TSS region transcription start site region 60924
Npvf 6 50650871 to 50654393 3522 - protein coding gene neuropeptide VF precursor
Tssr60925 6 50654438 to 50654448 10 - TSS region transcription start site region 60925
Gm38808 6 50659851 to 50679483 19632 - lncRNA gene predicted gene, 38808
D6Mit276 6 50713385 to 50713499 114 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 276
Gm3017 6 50746687 to 50747812 1125 - pseudogene predicted gene 3017
C530044C16Rik 6 50776115 to 50814894 38779 + lincRNA gene RIKEN cDNA C530044C16 gene
Gm44109 6 50799072 to 50803031 3959 - lincRNA gene predicted gene, 44109
Gm31455 6 50804265 to 50822292 18027 - lncRNA gene predicted gene, 31455
G930045G22Rik 6 50846713 to 50878077 31364 - lincRNA gene RIKEN cDNA G930045G22 gene