Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:50189071-50599096

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48 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mpp6 6 50110241 to 50198598 88357 + protein coding gene membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)
Tssr56419 6 50190055 to 50190059 4 + TSS region transcription start site region 56419
Tssr56420 6 50200172 to 50200177 5 + TSS region transcription start site region 56420
Gsdme 6 50207401 to 50262862 55461 - protein coding gene gasdermin E
Tssr60897 6 50223114 to 50223158 44 - TSS region transcription start site region 60897
Tssr60898 6 50245363 to 50245367 4 - TSS region transcription start site region 60898
Tssr1842 6 50247514 to 50247516 2 - TSS region transcription start site region 1842
Cpgi17390 6 50261157 to 50262217 1060 CpG island CpG island 17390
Tssr60899 6 50261743 to 50261788 45 - TSS region transcription start site region 60899
Tssr60900 6 50261791 to 50261813 22 - TSS region transcription start site region 60900
Tssr56421 6 50261933 to 50261960 27 + TSS region transcription start site region 56421
Tssr60901 6 50261943 to 50261955 12 - TSS region transcription start site region 60901
Osbpl3 6 50293330 to 50456201 162871 - protein coding gene oxysterol binding protein-like 3
Tssr60902 6 50381652 to 50381655 3 - TSS region transcription start site region 60902
Tssr60903 6 50382831 to 50382847 16 - TSS region transcription start site region 60903
Tssr60904 6 50382902 to 50382913 11 - TSS region transcription start site region 60904
Tssr60905 6 50382925 to 50382936 11 - TSS region transcription start site region 60905
Tssr60906 6 50384472 to 50384494 22 - TSS region transcription start site region 60906
Tssr60907 6 50392921 to 50392930 9 - TSS region transcription start site region 60907
Tssr60908 6 50392957 to 50392978 21 - TSS region transcription start site region 60908
Tssr60909 6 50394006 to 50394030 24 - TSS region transcription start site region 60909
Tssr60910 6 50394071 to 50394096 25 - TSS region transcription start site region 60910
Tssr60911 6 50394100 to 50394124 24 - TSS region transcription start site region 60911
Tssr60912 6 50394255 to 50394277 22 - TSS region transcription start site region 60912
Tssr56422 6 50394391 to 50394403 12 + TSS region transcription start site region 56422
Tssr60913 6 50397068 to 50397077 9 - TSS region transcription start site region 60913
Tssr60914 6 50404907 to 50404920 13 - TSS region transcription start site region 60914
Cpgi17391 6 50455138 to 50456477 1339 CpG island CpG island 17391
Tssr60915 6 50456085 to 50456174 89 - TSS region transcription start site region 60915
Tssr60916 6 50456353 to 50456362 9 - TSS region transcription start site region 60916
Gm40372 6 50499549 to 50505724 6175 - lncRNA gene predicted gene, 40372
Gm31279 6 50501559 to 50538015 36456 + lncRNA gene predicted gene, 31279
Tssr60917 6 50505721 to 50505752 31 - TSS region transcription start site region 60917
Gm26289 6 50539904 to 50540034 130 - snoRNA gene predicted gene, 26289
Gm38806 6 50540757 to 50542978 2221 + lncRNA gene predicted gene, 38806
Cycs 6 50562563 to 50566474 3911 - protein coding gene cytochrome c, somatic
Cpgi17392 6 50566025 to 50567067 1042 CpG island CpG island 17392
Tssr60918 6 50566535 to 50566558 23 - TSS region transcription start site region 60918
Tssr60919 6 50566563 to 50566577 14 - TSS region transcription start site region 60919
5430402O13Rik 6 50566643 to 50594865 28222 + antisense lncRNA gene RIKEN cDNA 5430402O13 gene
Tssr56423 6 50566720 to 50566750 30 + TSS region transcription start site region 56423
Mir6371 6 50572398 to 50572508 110 + miRNA gene microRNA 6371
4921507P07Rik 6 50573302 to 50596632 23330 - protein coding gene RIKEN cDNA 4921507P07 gene
Tssr60920 6 50574416 to 50574429 13 - TSS region transcription start site region 60920
Cpgi17393 6 50596260 to 50597094 834 CpG island CpG island 17393
Tssr60921 6 50596564 to 50596573 9 - TSS region transcription start site region 60921
Tssr60922 6 50596578 to 50596612 34 - TSS region transcription start site region 60922
Tssr60923 6 50596624 to 50596639 15 - TSS region transcription start site region 60923