Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:49346929-53586945

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563 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr60890 6 49366811 to 49366823 12 - TSS region transcription start site region 60890
Fam221a 6 49367217 to 49389905 22688 + protein coding gene family with sequence similarity 221, member A
Cpgi17385 6 49367389 to 49368099 710 CpG island CpG island 17385
Tssr56399 6 49367789 to 49367866 77 + TSS region transcription start site region 56399
Tssr56400 6 49372346 to 49372383 37 + TSS region transcription start site region 56400
Cpgi17386 6 49395306 to 49395937 631 CpG island CpG island 17386
Tssr56401 6 49395532 to 49395558 26 + TSS region transcription start site region 56401
Tssr56402 6 49395559 to 49395594 35 + TSS region transcription start site region 56402
Stk31 6 49395604 to 49469501 73897 + protein coding gene serine threonine kinase 31
Gm17060 6 49424061 to 49424884 823 - pseudogene predicted gene 17060
Tssr60891 6 49424968 to 49424969 1 - TSS region transcription start site region 60891
Tssr56403 6 49481536 to 49481540 4 + TSS region transcription start site region 56403
Gm5305 6 49542982 to 49543727 745 - pseudogene predicted gene 5305
Tssr60892 6 49543768 to 49543770 2 - TSS region transcription start site region 60892
Tssr56404 6 49586819 to 49586842 23 + TSS region transcription start site region 56404
Tssr56405 6 49586961 to 49586982 21 + TSS region transcription start site region 56405
Rpl19-ps8 6 49596241 to 49599764 3523 + pseudogene ribosomal protein L19, pseudogene 8
Gm31226 6 49633631 to 49678455 44824 + lncRNA gene predicted gene, 31226
V25Dq5 6 49700000 to 49700000 0 QTL vitamin D inactive form serum level QTL 5
Gm44219 6 49727251 to 49727523 272 - pseudogene predicted gene, 44219
Tssr60893 6 49733491 to 49733500 9 - TSS region transcription start site region 60893
Cpgi17387 6 49822030 to 49823005 975 CpG island CpG island 17387
Npy 6 49822710 to 49829507 6797 + protein coding gene neuropeptide Y
Tssr56406 6 49822711 to 49822727 16 + TSS region transcription start site region 56406
Tssr56407 6 49823615 to 49823629 14 + TSS region transcription start site region 56407
Cpgi17388 6 49823649 to 49823822 173 CpG island CpG island 17388
Tssr56408 6 49823674 to 49823686 12 + TSS region transcription start site region 56408
Tssr56409 6 49823731 to 49823740 9 + TSS region transcription start site region 56409
Tssr56410 6 49823753 to 49823762 9 + TSS region transcription start site region 56410
Tssr56411 6 49827537 to 49827546 9 + TSS region transcription start site region 56411
Tssr60894 6 49829499 to 49829508 9 - TSS region transcription start site region 60894
Gm18007 6 49858003 to 49858846 843 - pseudogene predicted gene, 18007
Tssr60895 6 49867767 to 49867773 6 - TSS region transcription start site region 60895
Tssr60896 6 49882070 to 49882074 4 - TSS region transcription start site region 60896
Gm3455 6 50051186 to 50107628 56442 + lincRNA gene predicted gene 3455
Gm38805 6 50107655 to 50110157 2502 - lncRNA gene predicted gene, 38805
Cpgi17389 6 50109367 to 50111032 1665 CpG island CpG island 17389
Tssr56412 6 50110186 to 50110295 109 + TSS region transcription start site region 56412
Mpp6 6 50110241 to 50198598 88357 + protein coding gene membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)
Tssr56413 6 50110837 to 50110888 51 + TSS region transcription start site region 56413
Tssr56414 6 50110894 to 50110926 32 + TSS region transcription start site region 56414
Tssr56415 6 50125301 to 50125305 4 + TSS region transcription start site region 56415
Tssr56416 6 50133297 to 50133321 24 + TSS region transcription start site region 56416
Tssr56417 6 50144687 to 50144698 11 + TSS region transcription start site region 56417
Tssr56418 6 50144727 to 50144748 21 + TSS region transcription start site region 56418
Tssr56419 6 50190055 to 50190059 4 + TSS region transcription start site region 56419
Tssr56420 6 50200172 to 50200177 5 + TSS region transcription start site region 56420
Gsdme 6 50207401 to 50262862 55461 - protein coding gene gasdermin E
Tssr60897 6 50223114 to 50223158 44 - TSS region transcription start site region 60897
Tssr60898 6 50245363 to 50245367 4 - TSS region transcription start site region 60898
Tssr1842 6 50247514 to 50247516 2 - TSS region transcription start site region 1842
Cpgi17390 6 50261157 to 50262217 1060 CpG island CpG island 17390
Tssr60899 6 50261743 to 50261788 45 - TSS region transcription start site region 60899
Tssr60900 6 50261791 to 50261813 22 - TSS region transcription start site region 60900
Tssr56421 6 50261933 to 50261960 27 + TSS region transcription start site region 56421
Tssr60901 6 50261943 to 50261955 12 - TSS region transcription start site region 60901
Osbpl3 6 50293330 to 50456201 162871 - protein coding gene oxysterol binding protein-like 3
Tssr60902 6 50381652 to 50381655 3 - TSS region transcription start site region 60902
Tssr60903 6 50382831 to 50382847 16 - TSS region transcription start site region 60903
Tssr60904 6 50382902 to 50382913 11 - TSS region transcription start site region 60904
Tssr60905 6 50382925 to 50382936 11 - TSS region transcription start site region 60905
Tssr60906 6 50384472 to 50384494 22 - TSS region transcription start site region 60906
Tssr60907 6 50392921 to 50392930 9 - TSS region transcription start site region 60907
Tssr60908 6 50392957 to 50392978 21 - TSS region transcription start site region 60908
Tssr60909 6 50394006 to 50394030 24 - TSS region transcription start site region 60909
Tssr60910 6 50394071 to 50394096 25 - TSS region transcription start site region 60910
Tssr60911 6 50394100 to 50394124 24 - TSS region transcription start site region 60911
Tssr60912 6 50394255 to 50394277 22 - TSS region transcription start site region 60912
Tssr56422 6 50394391 to 50394403 12 + TSS region transcription start site region 56422
Tssr60913 6 50397068 to 50397077 9 - TSS region transcription start site region 60913
Tssr60914 6 50404907 to 50404920 13 - TSS region transcription start site region 60914
Cpgi17391 6 50455138 to 50456477 1339 CpG island CpG island 17391
Tssr60915 6 50456085 to 50456174 89 - TSS region transcription start site region 60915
Tssr60916 6 50456353 to 50456362 9 - TSS region transcription start site region 60916
Gm40372 6 50499549 to 50505724 6175 - lncRNA gene predicted gene, 40372
Gm31279 6 50501559 to 50538015 36456 + lncRNA gene predicted gene, 31279
Tssr60917 6 50505721 to 50505752 31 - TSS region transcription start site region 60917
Gm26289 6 50539904 to 50540034 130 - snoRNA gene predicted gene, 26289
Gm38806 6 50540757 to 50542978 2221 + lncRNA gene predicted gene, 38806
Cycs 6 50562563 to 50566474 3911 - protein coding gene cytochrome c, somatic
Cpgi17392 6 50566025 to 50567067 1042 CpG island CpG island 17392
Tssr60918 6 50566535 to 50566558 23 - TSS region transcription start site region 60918
Tssr60919 6 50566563 to 50566577 14 - TSS region transcription start site region 60919
5430402O13Rik 6 50566643 to 50594865 28222 + antisense lncRNA gene RIKEN cDNA 5430402O13 gene
Tssr56423 6 50566720 to 50566750 30 + TSS region transcription start site region 56423
Mir6371 6 50572398 to 50572508 110 + miRNA gene microRNA 6371
4921507P07Rik 6 50573302 to 50596632 23330 - protein coding gene RIKEN cDNA 4921507P07 gene
Tssr60920 6 50574416 to 50574429 13 - TSS region transcription start site region 60920
Cpgi17393 6 50596260 to 50597094 834 CpG island CpG island 17393
Tssr60921 6 50596564 to 50596573 9 - TSS region transcription start site region 60921
Tssr60922 6 50596578 to 50596612 34 - TSS region transcription start site region 60922
Tssr60923 6 50596624 to 50596639 15 - TSS region transcription start site region 60923
Gm44054 6 50599869 to 50600240 371 + pseudogene predicted gene, 44054
Gm38807 6 50601538 to 50605277 3739 - lncRNA gene predicted gene, 38807
Tssr56424 6 50608420 to 50608428 8 + TSS region transcription start site region 56424
Gm4782 6 50608637 to 50610682 2045 + pseudogene predicted gene 4782
Gm8035 6 50617849 to 50618535 686 - pseudogene predicted gene 8035
Gm8038 6 50619841 to 50621884 2043 - pseudogene predicted gene 8038
Gm8039 6 50625745 to 50626456 711 - pseudogene predicted gene 8039
Gm18765 6 50627680 to 50628339 659 - pseudogene predicted gene, 18765
Tssr60924 6 50631123 to 50631125 2 - TSS region transcription start site region 60924
Npvf 6 50650871 to 50654393 3522 - protein coding gene neuropeptide VF precursor
Tssr60925 6 50654438 to 50654448 10 - TSS region transcription start site region 60925
Gm38808 6 50659851 to 50679483 19632 - lncRNA gene predicted gene, 38808
D6Mit276 6 50713385 to 50713499 114 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 276
Gm3017 6 50746687 to 50747812 1125 - pseudogene predicted gene 3017
C530044C16Rik 6 50776115 to 50814894 38779 + lincRNA gene RIKEN cDNA C530044C16 gene
Gm44109 6 50799072 to 50803031 3959 - lincRNA gene predicted gene, 44109
Gm31455 6 50804265 to 50822292 18027 - lncRNA gene predicted gene, 31455
G930045G22Rik 6 50846713 to 50878077 31364 - lincRNA gene RIKEN cDNA G930045G22 gene
Hdlk 6 50864934 to 55556043 4691109 heritable phenotypic marker hypodactyly like
D6Mit119 6 50864934 to 50865047 113 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 119
Gm45922 6 50880887 to 50882620 1733 - lncRNA gene predicted gene, 45922
Cpgi17394 6 50890859 to 50891081 222 CpG island CpG island 17394
Tssr56425 6 50891297 to 50891305 8 + TSS region transcription start site region 56425
Lxw2 6 50895281 to 50895420 139 QTL lupus BXSB x NZW 2
D6Mit33 6 50895281 to 50895420 139 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 33
Mom12 6 50895281 to 50895420 139 QTL Modifier of Min 12
Gm31631 6 50900455 to 50908977 8522 - lncRNA gene predicted gene, 31631
Gm31579 6 50909770 to 50910735 965 + lncRNA gene predicted gene, 31579
Gm31686 6 50935003 to 50944382 9379 - lncRNA gene predicted gene, 31686
Gm44402 6 50967268 to 50967505 237 + pseudogene predicted gene, 44402
Gm38809 6 50973384 to 50990371 16987 - lncRNA gene predicted gene, 38809
Gm46959 6 50987400 to 51068011 80611 + lncRNA gene predicted gene, 46959
Gm31746 6 51032935 to 51061257 28322 - lncRNA gene predicted gene, 31746
Tssr60926 6 51059702 to 51059745 43 - TSS region transcription start site region 60926
D6Mit240 6 51077549 to 51077653 104 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 240
D6Mit240.1 6 51077688 to 51077801 113 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 240.1
Gm32190 6 51096515 to 51100672 4157 - lncRNA gene predicted gene, 32190
Gm32328 6 51124747 to 51166446 41699 - lncRNA gene predicted gene, 32328
Gm32246 6 51142007 to 51146083 4076 + lncRNA gene predicted gene, 32246
Gm38810 6 51154278 to 51154934 656 + lncRNA gene predicted gene, 38810
D6Mit275 6 51162079 to 51162203 124 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 275
D6Dcr9 6 51162097 to 51162200 103 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 9
Cpgi17395 6 51168742 to 51169197 455 CpG island CpG island 17395
Cpgi17396 6 51170109 to 51170340 231 CpG island CpG island 17396
Tssr56426 6 51171201 to 51171215 14 + TSS region transcription start site region 56426
Cpgi17397 6 51178562 to 51178782 220 CpG island CpG island 17397
Gm32403 6 51200919 to 51207351 6432 - lncRNA gene predicted gene, 32403
Gm38821 6 51222957 to 51280572 57615 - protein coding gene predicted gene, 38821
Mir148a 6 51269812 to 51269910 98 - miRNA gene microRNA 148a
Tssr60927 6 51269823 to 51269828 5 - TSS region transcription start site region 60927
Cpgi17398 6 51270229 to 51271430 1201 CpG island CpG island 17398
Tssr60928 6 51270870 to 51270889 19 - TSS region transcription start site region 60928
Tssr60929 6 51270896 to 51270941 45 - TSS region transcription start site region 60929
Tssr56427 6 51282889 to 51282892 3 + TSS region transcription start site region 56427
Gm32479 6 51283532 to 51287855 4323 - lincRNA gene predicted gene, 32479
Tssr60930 6 51320887 to 51320896 9 - TSS region transcription start site region 60930
Tssr60931 6 51320917 to 51320925 8 - TSS region transcription start site region 60931
Tssr60932 6 51320929 to 51320936 7 - TSS region transcription start site region 60932
Tssr60933 6 51320946 to 51320967 21 - TSS region transcription start site region 60933
Tssr56428 6 51326913 to 51326917 4 + TSS region transcription start site region 56428
Tssr56429 6 51329795 to 51329804 9 + TSS region transcription start site region 56429
Tssr56430 6 51329852 to 51329865 13 + TSS region transcription start site region 56430
Tssr56431 6 51329871 to 51329883 12 + TSS region transcription start site region 56431
Tssr56432 6 51329890 to 51329920 30 + TSS region transcription start site region 56432
BC022713 6 51330493 to 51333705 3212 unclassified gene cDNA sequence BC022713
Tssr56433 6 51330650 to 51330665 15 + TSS region transcription start site region 56433
Tssr56434 6 51330701 to 51330716 15 + TSS region transcription start site region 56434
Tssr60934 6 51346752 to 51346774 22 - TSS region transcription start site region 60934
Cpgi17399 6 51379532 to 51380013 481 CpG island CpG island 17399
Gm6559 6 51379710 to 51392791 13081 + lincRNA gene predicted gene 6559
Gm26677 6 51379710 to 51392777 13067 - lincRNA gene predicted gene, 26677
0610033M10Rik 6 51400966 to 51402219 1253 - lincRNA gene RIKEN cDNA 0610033M10 gene
Cpgi17400 6 51422187 to 51422473 286 CpG island CpG island 17400
Cpgi17401 6 51432593 to 51433535 942 CpG island CpG island 17401
Tssr56435 6 51432663 to 51432674 11 + TSS region transcription start site region 56435
Nfe2l3 6 51432670 to 51458768 26098 + protein coding gene nuclear factor, erythroid derived 2, like 3
Tssr56436 6 51432678 to 51432784 106 + TSS region transcription start site region 56436
Tssr56437 6 51432823 to 51432834 11 + TSS region transcription start site region 56437
Hnrnpa2b1 6 51460932 to 51469894 8962 - protein coding gene heterogeneous nuclear ribonucleoprotein A2/B1
Tssr56438 6 51463424 to 51463461 37 + TSS region transcription start site region 56438
Tssr60935 6 51463483 to 51463499 16 - TSS region transcription start site region 60935
Tssr56439 6 51464418 to 51464429 11 + TSS region transcription start site region 56439
Tssr56440 6 51464438 to 51464448 10 + TSS region transcription start site region 56440
Tssr60936 6 51464446 to 51464450 4 - TSS region transcription start site region 60936
Tssr56441 6 51464450 to 51464460 10 + TSS region transcription start site region 56441
Tssr60937 6 51464453 to 51464471 18 - TSS region transcription start site region 60937
Tssr56442 6 51464466 to 51464512 46 + TSS region transcription start site region 56442
Tssr60938 6 51464495 to 51464515 20 - TSS region transcription start site region 60938
Tssr1843 6 51465177 to 51465201 24 + TSS region transcription start site region 1843
Tssr60939 6 51466219 to 51466225 6 - TSS region transcription start site region 60939
Tssr60940 6 51466377 to 51466404 27 - TSS region transcription start site region 60940
Tssr60941 6 51466622 to 51466688 66 - TSS region transcription start site region 60941
Tssr60942 6 51466831 to 51466835 4 - TSS region transcription start site region 60942
Tssr60943 6 51466929 to 51466945 16 - TSS region transcription start site region 60943
Tssr60944 6 51466951 to 51466992 41 - TSS region transcription start site region 60944
Tssr60945 6 51467819 to 51467821 2 - TSS region transcription start site region 60945
Tssr60946 6 51468451 to 51468469 18 - TSS region transcription start site region 60946
Cpgi17402 6 51468845 to 51471391 2546 CpG island CpG island 17402
Tssr56443 6 51469428 to 51469462 34 + TSS region transcription start site region 56443
Tssr60947 6 51469836 to 51469854 18 - TSS region transcription start site region 60947
Tssr60948 6 51469869 to 51469877 8 - TSS region transcription start site region 60948
Tssr56444 6 51470183 to 51470217 34 + TSS region transcription start site region 56444
Tssr56445 6 51470339 to 51470350 11 + TSS region transcription start site region 56445
Tssr56446 6 51470405 to 51470416 11 + TSS region transcription start site region 56446
Tssr56447 6 51470421 to 51470430 9 + TSS region transcription start site region 56447
Tssr56448 6 51470433 to 51470478 45 + TSS region transcription start site region 56448
Cbx3 6 51470447 to 51483704 13257 + protein coding gene chromobox 3
Tssr56449 6 51470494 to 51470497 3 + TSS region transcription start site region 56449