Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:49340000-50060000

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36 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ccdc126 6 49319274 to 49341582 22308 + protein coding gene coiled-coil domain containing 126
Tssr60890 6 49366811 to 49366823 12 - TSS region transcription start site region 60890
Fam221a 6 49367217 to 49389905 22688 + protein coding gene family with sequence similarity 221, member A
Cpgi17385 6 49367389 to 49368099 710 CpG island CpG island 17385
Tssr56399 6 49367789 to 49367866 77 + TSS region transcription start site region 56399
Tssr56400 6 49372346 to 49372383 37 + TSS region transcription start site region 56400
Cpgi17386 6 49395306 to 49395937 631 CpG island CpG island 17386
Tssr56401 6 49395532 to 49395558 26 + TSS region transcription start site region 56401
Tssr56402 6 49395559 to 49395594 35 + TSS region transcription start site region 56402
Stk31 6 49395604 to 49469501 73897 + protein coding gene serine threonine kinase 31
Gm17060 6 49424061 to 49424884 823 - pseudogene predicted gene 17060
Tssr60891 6 49424968 to 49424969 1 - TSS region transcription start site region 60891
Tssr56403 6 49481536 to 49481540 4 + TSS region transcription start site region 56403
Gm5305 6 49542982 to 49543727 745 - pseudogene predicted gene 5305
Tssr60892 6 49543768 to 49543770 2 - TSS region transcription start site region 60892
Tssr56404 6 49586819 to 49586842 23 + TSS region transcription start site region 56404
Tssr56405 6 49586961 to 49586982 21 + TSS region transcription start site region 56405
Rpl19-ps8 6 49596241 to 49599764 3523 + pseudogene ribosomal protein L19, pseudogene 8
Gm31226 6 49633631 to 49678455 44824 + lncRNA gene predicted gene, 31226
V25Dq5 6 49700000 to 49700000 0 QTL vitamin D inactive form serum level QTL 5
Gm44219 6 49727251 to 49727523 272 - pseudogene predicted gene, 44219
Tssr60893 6 49733491 to 49733500 9 - TSS region transcription start site region 60893
Cpgi17387 6 49822030 to 49823005 975 CpG island CpG island 17387
Npy 6 49822710 to 49829507 6797 + protein coding gene neuropeptide Y
Tssr56406 6 49822711 to 49822727 16 + TSS region transcription start site region 56406
Tssr56407 6 49823615 to 49823629 14 + TSS region transcription start site region 56407
Cpgi17388 6 49823649 to 49823822 173 CpG island CpG island 17388
Tssr56408 6 49823674 to 49823686 12 + TSS region transcription start site region 56408
Tssr56409 6 49823731 to 49823740 9 + TSS region transcription start site region 56409
Tssr56410 6 49823753 to 49823762 9 + TSS region transcription start site region 56410
Tssr56411 6 49827537 to 49827546 9 + TSS region transcription start site region 56411
Tssr60894 6 49829499 to 49829508 9 - TSS region transcription start site region 60894
Gm18007 6 49858003 to 49858846 843 - pseudogene predicted gene, 18007
Tssr60895 6 49867767 to 49867773 6 - TSS region transcription start site region 60895
Tssr60896 6 49882070 to 49882074 4 - TSS region transcription start site region 60896
Gm3455 6 50051186 to 50107628 56442 + lincRNA gene predicted gene 3455