Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:49059499-50599508

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151 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr56382 6 49059988 to 49060004 16 + TSS region transcription start site region 56382
Tssr56383 6 49060225 to 49060236 11 + TSS region transcription start site region 56383
Tssr56384 6 49061041 to 49061054 13 + TSS region transcription start site region 56384
Tssr56385 6 49062086 to 49062119 33 + TSS region transcription start site region 56385
Tssr56386 6 49068483 to 49068504 21 + TSS region transcription start site region 56386
Tssr1840 6 49068853 to 49068868 15 + TSS region transcription start site region 1840
Tssr56387 6 49069531 to 49069558 27 + TSS region transcription start site region 56387
Tssr56388 6 49071204 to 49071217 13 + TSS region transcription start site region 56388
Tssr56389 6 49071255 to 49071271 16 + TSS region transcription start site region 56389
Gm19253 6 49071630 to 49071936 306 + pseudogene predicted gene, 19253
Cpgi17380 6 49073668 to 49074458 790 CpG island CpG island 17380
Tssr1841 6 49073728 to 49073750 22 - TSS region transcription start site region 1841
Malsu1 6 49073795 to 49086751 12956 + protein coding gene mitochondrial assembly of ribosomal large subunit 1
Tssr56390 6 49073816 to 49073861 45 + TSS region transcription start site region 56390
Gm7890 6 49080462 to 49081062 600 - pseudogene predicted gene 7890
Igf2bp3 6 49085223 to 49214957 129734 - protein coding gene insulin-like growth factor 2 mRNA binding protein 3
Tssr56391 6 49087142 to 49087146 4 + TSS region transcription start site region 56391
Tssr60866 6 49110975 to 49110998 23 - TSS region transcription start site region 60866
Tssr60867 6 49111002 to 49111012 10 - TSS region transcription start site region 60867
Tssr60868 6 49111053 to 49111059 6 - TSS region transcription start site region 60868
Tssr60869 6 49111083 to 49111100 17 - TSS region transcription start site region 60869
Tssr60870 6 49111118 to 49111137 19 - TSS region transcription start site region 60870
Tssr56392 6 49111227 to 49111258 31 + TSS region transcription start site region 56392
Gm18010 6 49172759 to 49172960 201 + pseudogene predicted gene, 18010
D030074P21Rik 6 49205810 to 49212479 6669 - lncRNA gene RIKEN cDNA D030074P21 gene
Tssr60871 6 49210283 to 49210287 4 - TSS region transcription start site region 60871
Cpgi17381 6 49213481 to 49215870 2389 CpG island CpG island 17381
Tssr60872 6 49214161 to 49214179 18 - TSS region transcription start site region 60872
Tssr60873 6 49214585 to 49214592 7 - TSS region transcription start site region 60873
Tssr60874 6 49214665 to 49214676 11 - TSS region transcription start site region 60874
Tssr60875 6 49214698 to 49214721 23 - TSS region transcription start site region 60875
Tssr60876 6 49214725 to 49214748 23 - TSS region transcription start site region 60876
Tssr60877 6 49214818 to 49214827 9 - TSS region transcription start site region 60877
Tssr60878 6 49214847 to 49214856 9 - TSS region transcription start site region 60878
Tssr60879 6 49215013 to 49215022 9 - TSS region transcription start site region 60879
Tssr60880 6 49215361 to 49215377 16 - TSS region transcription start site region 60880
Tssr60881 6 49215412 to 49215470 58 - TSS region transcription start site region 60881
Cpgi17382 6 49217507 to 49218408 901 CpG island CpG island 17382
Tssr60882 6 49217958 to 49217983 25 - TSS region transcription start site region 60882
Tssr56393 6 49218281 to 49218304 23 + TSS region transcription start site region 56393
Tssr56394 6 49218311 to 49218327 16 + TSS region transcription start site region 56394
Tssr56395 6 49218440 to 49218444 4 + TSS region transcription start site region 56395
Tssr60883 6 49236509 to 49236551 42 - TSS region transcription start site region 60883
Tra2a 6 49243924 to 49264033 20109 - protein coding gene transformer 2 alpha
Tssr56396 6 49244741 to 49244744 3 + TSS region transcription start site region 56396
Tssr60884 6 49245540 to 49245574 34 - TSS region transcription start site region 60884
Tssr60885 6 49253072 to 49253085 13 - TSS region transcription start site region 60885
Tssr60886 6 49254273 to 49254288 15 - TSS region transcription start site region 60886
B230214O09Rik 6 49254848 to 49256461 1613 unclassified non-coding RNA gene RIKEN cDNA B230214O09 gene
Gm43980 6 49254851 to 49256462 1611 + unclassified gene predicted gene, 43980
Cpgi17383 6 49263100 to 49264271 1171 CpG island CpG island 17383
Tssr56397 6 49263236 to 49263257 21 + TSS region transcription start site region 56397
Tssr60887 6 49263979 to 49263990 11 - TSS region transcription start site region 60887
Tssr60888 6 49264014 to 49264060 46 - TSS region transcription start site region 60888
Gm18011 6 49286721 to 49287285 564 + pseudogene predicted gene, 18011
Cpgi17384 6 49319045 to 49319787 742 CpG island CpG island 17384
Ccdc126 6 49319274 to 49341582 22308 + protein coding gene coiled-coil domain containing 126
Tssr56398 6 49319290 to 49319367 77 + TSS region transcription start site region 56398
Tssr60889 6 49338688 to 49338695 7 - TSS region transcription start site region 60889
Tssr60890 6 49366811 to 49366823 12 - TSS region transcription start site region 60890
Fam221a 6 49367217 to 49389905 22688 + protein coding gene family with sequence similarity 221, member A
Cpgi17385 6 49367389 to 49368099 710 CpG island CpG island 17385
Tssr56399 6 49367789 to 49367866 77 + TSS region transcription start site region 56399
Tssr56400 6 49372346 to 49372383 37 + TSS region transcription start site region 56400
Cpgi17386 6 49395306 to 49395937 631 CpG island CpG island 17386
Tssr56401 6 49395532 to 49395558 26 + TSS region transcription start site region 56401
Tssr56402 6 49395559 to 49395594 35 + TSS region transcription start site region 56402
Stk31 6 49395604 to 49469501 73897 + protein coding gene serine threonine kinase 31
Gm17060 6 49424061 to 49424884 823 - pseudogene predicted gene 17060
Tssr60891 6 49424968 to 49424969 1 - TSS region transcription start site region 60891
Tssr56403 6 49481536 to 49481540 4 + TSS region transcription start site region 56403
Gm5305 6 49542982 to 49543727 745 - pseudogene predicted gene 5305
Tssr60892 6 49543768 to 49543770 2 - TSS region transcription start site region 60892
Tssr56404 6 49586819 to 49586842 23 + TSS region transcription start site region 56404
Tssr56405 6 49586961 to 49586982 21 + TSS region transcription start site region 56405
Rpl19-ps8 6 49596241 to 49599764 3523 + pseudogene ribosomal protein L19, pseudogene 8
Gm31226 6 49633631 to 49678455 44824 + lncRNA gene predicted gene, 31226
V25Dq5 6 49700000 to 49700000 0 QTL vitamin D inactive form serum level QTL 5
Gm44219 6 49727251 to 49727523 272 - pseudogene predicted gene, 44219
Tssr60893 6 49733491 to 49733500 9 - TSS region transcription start site region 60893
Cpgi17387 6 49822030 to 49823005 975 CpG island CpG island 17387
Npy 6 49822710 to 49829507 6797 + protein coding gene neuropeptide Y
Tssr56406 6 49822711 to 49822727 16 + TSS region transcription start site region 56406
Tssr56407 6 49823615 to 49823629 14 + TSS region transcription start site region 56407
Cpgi17388 6 49823649 to 49823822 173 CpG island CpG island 17388
Tssr56408 6 49823674 to 49823686 12 + TSS region transcription start site region 56408
Tssr56409 6 49823731 to 49823740 9 + TSS region transcription start site region 56409
Tssr56410 6 49823753 to 49823762 9 + TSS region transcription start site region 56410
Tssr56411 6 49827537 to 49827546 9 + TSS region transcription start site region 56411
Tssr60894 6 49829499 to 49829508 9 - TSS region transcription start site region 60894
Gm18007 6 49858003 to 49858846 843 - pseudogene predicted gene, 18007
Tssr60895 6 49867767 to 49867773 6 - TSS region transcription start site region 60895
Tssr60896 6 49882070 to 49882074 4 - TSS region transcription start site region 60896
Gm3455 6 50051186 to 50107628 56442 + lincRNA gene predicted gene 3455
Gm38805 6 50107655 to 50110157 2502 - lncRNA gene predicted gene, 38805
Cpgi17389 6 50109367 to 50111032 1665 CpG island CpG island 17389
Tssr56412 6 50110186 to 50110295 109 + TSS region transcription start site region 56412
Mpp6 6 50110241 to 50198598 88357 + protein coding gene membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)
Tssr56413 6 50110837 to 50110888 51 + TSS region transcription start site region 56413
Tssr56414 6 50110894 to 50110926 32 + TSS region transcription start site region 56414
Tssr56415 6 50125301 to 50125305 4 + TSS region transcription start site region 56415
Tssr56416 6 50133297 to 50133321 24 + TSS region transcription start site region 56416
Tssr56417 6 50144687 to 50144698 11 + TSS region transcription start site region 56417
Tssr56418 6 50144727 to 50144748 21 + TSS region transcription start site region 56418
Tssr56419 6 50190055 to 50190059 4 + TSS region transcription start site region 56419
Tssr56420 6 50200172 to 50200177 5 + TSS region transcription start site region 56420
Gsdme 6 50207401 to 50262862 55461 - protein coding gene gasdermin E
Tssr60897 6 50223114 to 50223158 44 - TSS region transcription start site region 60897
Tssr60898 6 50245363 to 50245367 4 - TSS region transcription start site region 60898
Tssr1842 6 50247514 to 50247516 2 - TSS region transcription start site region 1842
Cpgi17390 6 50261157 to 50262217 1060 CpG island CpG island 17390
Tssr60899 6 50261743 to 50261788 45 - TSS region transcription start site region 60899
Tssr60900 6 50261791 to 50261813 22 - TSS region transcription start site region 60900
Tssr56421 6 50261933 to 50261960 27 + TSS region transcription start site region 56421
Tssr60901 6 50261943 to 50261955 12 - TSS region transcription start site region 60901
Osbpl3 6 50293330 to 50456201 162871 - protein coding gene oxysterol binding protein-like 3
Tssr60902 6 50381652 to 50381655 3 - TSS region transcription start site region 60902
Tssr60903 6 50382831 to 50382847 16 - TSS region transcription start site region 60903
Tssr60904 6 50382902 to 50382913 11 - TSS region transcription start site region 60904
Tssr60905 6 50382925 to 50382936 11 - TSS region transcription start site region 60905
Tssr60906 6 50384472 to 50384494 22 - TSS region transcription start site region 60906
Tssr60907 6 50392921 to 50392930 9 - TSS region transcription start site region 60907
Tssr60908 6 50392957 to 50392978 21 - TSS region transcription start site region 60908
Tssr60909 6 50394006 to 50394030 24 - TSS region transcription start site region 60909
Tssr60910 6 50394071 to 50394096 25 - TSS region transcription start site region 60910
Tssr60911 6 50394100 to 50394124 24 - TSS region transcription start site region 60911
Tssr60912 6 50394255 to 50394277 22 - TSS region transcription start site region 60912
Tssr56422 6 50394391 to 50394403 12 + TSS region transcription start site region 56422
Tssr60913 6 50397068 to 50397077 9 - TSS region transcription start site region 60913
Tssr60914 6 50404907 to 50404920 13 - TSS region transcription start site region 60914
Cpgi17391 6 50455138 to 50456477 1339 CpG island CpG island 17391
Tssr60915 6 50456085 to 50456174 89 - TSS region transcription start site region 60915
Tssr60916 6 50456353 to 50456362 9 - TSS region transcription start site region 60916
Gm40372 6 50499549 to 50505724 6175 - lncRNA gene predicted gene, 40372
Gm31279 6 50501559 to 50538015 36456 + lncRNA gene predicted gene, 31279
Tssr60917 6 50505721 to 50505752 31 - TSS region transcription start site region 60917
Gm26289 6 50539904 to 50540034 130 - snoRNA gene predicted gene, 26289
Gm38806 6 50540757 to 50542978 2221 + lncRNA gene predicted gene, 38806
Cycs 6 50562563 to 50566474 3911 - protein coding gene cytochrome c, somatic
Cpgi17392 6 50566025 to 50567067 1042 CpG island CpG island 17392
Tssr60918 6 50566535 to 50566558 23 - TSS region transcription start site region 60918
Tssr60919 6 50566563 to 50566577 14 - TSS region transcription start site region 60919
5430402O13Rik 6 50566643 to 50594865 28222 + antisense lncRNA gene RIKEN cDNA 5430402O13 gene
Tssr56423 6 50566720 to 50566750 30 + TSS region transcription start site region 56423
Mir6371 6 50572398 to 50572508 110 + miRNA gene microRNA 6371
4921507P07Rik 6 50573302 to 50596632 23330 - protein coding gene RIKEN cDNA 4921507P07 gene
Tssr60920 6 50574416 to 50574429 13 - TSS region transcription start site region 60920
Cpgi17393 6 50596260 to 50597094 834 CpG island CpG island 17393
Tssr60921 6 50596564 to 50596573 9 - TSS region transcription start site region 60921
Tssr60922 6 50596578 to 50596612 34 - TSS region transcription start site region 60922
Tssr60923 6 50596624 to 50596639 15 - TSS region transcription start site region 60923