Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:49055604-49809501

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gpnmb 6 49036518 to 49058182 21664 + protein coding gene glycoprotein (transmembrane) nmb
Tssr56374 6 49055610 to 49055635 25 + TSS region transcription start site region 56374
Tssr56375 6 49056240 to 49056255 15 + TSS region transcription start site region 56375
Tssr56376 6 49056554 to 49056565 11 + TSS region transcription start site region 56376
Tssr56377 6 49056589 to 49056598 9 + TSS region transcription start site region 56377
Tssr56378 6 49056654 to 49056665 11 + TSS region transcription start site region 56378
Tssr56379 6 49056723 to 49056736 13 + TSS region transcription start site region 56379
Tssr60865 6 49056777 to 49056781 4 - TSS region transcription start site region 60865
Tssr56380 6 49059237 to 49059249 12 + TSS region transcription start site region 56380
Tssr56381 6 49059254 to 49059270 16 + TSS region transcription start site region 56381
Tssr56382 6 49059988 to 49060004 16 + TSS region transcription start site region 56382
Tssr56383 6 49060225 to 49060236 11 + TSS region transcription start site region 56383
Tssr56384 6 49061041 to 49061054 13 + TSS region transcription start site region 56384
Tssr56385 6 49062086 to 49062119 33 + TSS region transcription start site region 56385
Tssr56386 6 49068483 to 49068504 21 + TSS region transcription start site region 56386
Tssr1840 6 49068853 to 49068868 15 + TSS region transcription start site region 1840
Tssr56387 6 49069531 to 49069558 27 + TSS region transcription start site region 56387
Tssr56388 6 49071204 to 49071217 13 + TSS region transcription start site region 56388
Tssr56389 6 49071255 to 49071271 16 + TSS region transcription start site region 56389
Gm19253 6 49071630 to 49071936 306 + pseudogene predicted gene, 19253
Cpgi17380 6 49073668 to 49074458 790 CpG island CpG island 17380
Tssr1841 6 49073728 to 49073750 22 - TSS region transcription start site region 1841
Malsu1 6 49073795 to 49086751 12956 + protein coding gene mitochondrial assembly of ribosomal large subunit 1
Tssr56390 6 49073816 to 49073861 45 + TSS region transcription start site region 56390
Gm7890 6 49080462 to 49081062 600 - pseudogene predicted gene 7890
Igf2bp3 6 49085223 to 49214957 129734 - protein coding gene insulin-like growth factor 2 mRNA binding protein 3
Tssr56391 6 49087142 to 49087146 4 + TSS region transcription start site region 56391
Tssr60866 6 49110975 to 49110998 23 - TSS region transcription start site region 60866
Tssr60867 6 49111002 to 49111012 10 - TSS region transcription start site region 60867
Tssr60868 6 49111053 to 49111059 6 - TSS region transcription start site region 60868
Tssr60869 6 49111083 to 49111100 17 - TSS region transcription start site region 60869
Tssr60870 6 49111118 to 49111137 19 - TSS region transcription start site region 60870
Tssr56392 6 49111227 to 49111258 31 + TSS region transcription start site region 56392
Gm18010 6 49172759 to 49172960 201 + pseudogene predicted gene, 18010
D030074P21Rik 6 49205810 to 49212479 6669 - lncRNA gene RIKEN cDNA D030074P21 gene
Tssr60871 6 49210283 to 49210287 4 - TSS region transcription start site region 60871
Cpgi17381 6 49213481 to 49215870 2389 CpG island CpG island 17381
Tssr60872 6 49214161 to 49214179 18 - TSS region transcription start site region 60872
Tssr60873 6 49214585 to 49214592 7 - TSS region transcription start site region 60873
Tssr60874 6 49214665 to 49214676 11 - TSS region transcription start site region 60874
Tssr60875 6 49214698 to 49214721 23 - TSS region transcription start site region 60875
Tssr60876 6 49214725 to 49214748 23 - TSS region transcription start site region 60876
Tssr60877 6 49214818 to 49214827 9 - TSS region transcription start site region 60877
Tssr60878 6 49214847 to 49214856 9 - TSS region transcription start site region 60878
Tssr60879 6 49215013 to 49215022 9 - TSS region transcription start site region 60879
Tssr60880 6 49215361 to 49215377 16 - TSS region transcription start site region 60880
Tssr60881 6 49215412 to 49215470 58 - TSS region transcription start site region 60881
Cpgi17382 6 49217507 to 49218408 901 CpG island CpG island 17382
Tssr60882 6 49217958 to 49217983 25 - TSS region transcription start site region 60882
Tssr56393 6 49218281 to 49218304 23 + TSS region transcription start site region 56393
Tssr56394 6 49218311 to 49218327 16 + TSS region transcription start site region 56394
Tssr56395 6 49218440 to 49218444 4 + TSS region transcription start site region 56395
Tssr60883 6 49236509 to 49236551 42 - TSS region transcription start site region 60883
Tra2a 6 49243924 to 49264033 20109 - protein coding gene transformer 2 alpha
Tssr56396 6 49244741 to 49244744 3 + TSS region transcription start site region 56396
Tssr60884 6 49245540 to 49245574 34 - TSS region transcription start site region 60884
Tssr60885 6 49253072 to 49253085 13 - TSS region transcription start site region 60885
Tssr60886 6 49254273 to 49254288 15 - TSS region transcription start site region 60886
B230214O09Rik 6 49254848 to 49256461 1613 unclassified non-coding RNA gene RIKEN cDNA B230214O09 gene
Gm43980 6 49254851 to 49256462 1611 + unclassified gene predicted gene, 43980
Cpgi17383 6 49263100 to 49264271 1171 CpG island CpG island 17383
Tssr56397 6 49263236 to 49263257 21 + TSS region transcription start site region 56397
Tssr60887 6 49263979 to 49263990 11 - TSS region transcription start site region 60887
Tssr60888 6 49264014 to 49264060 46 - TSS region transcription start site region 60888
Gm18011 6 49286721 to 49287285 564 + pseudogene predicted gene, 18011
Cpgi17384 6 49319045 to 49319787 742 CpG island CpG island 17384
Ccdc126 6 49319274 to 49341582 22308 + protein coding gene coiled-coil domain containing 126
Tssr56398 6 49319290 to 49319367 77 + TSS region transcription start site region 56398
Tssr60889 6 49338688 to 49338695 7 - TSS region transcription start site region 60889
Tssr60890 6 49366811 to 49366823 12 - TSS region transcription start site region 60890
Fam221a 6 49367217 to 49389905 22688 + protein coding gene family with sequence similarity 221, member A
Cpgi17385 6 49367389 to 49368099 710 CpG island CpG island 17385
Tssr56399 6 49367789 to 49367866 77 + TSS region transcription start site region 56399
Tssr56400 6 49372346 to 49372383 37 + TSS region transcription start site region 56400
Cpgi17386 6 49395306 to 49395937 631 CpG island CpG island 17386
Tssr56401 6 49395532 to 49395558 26 + TSS region transcription start site region 56401
Tssr56402 6 49395559 to 49395594 35 + TSS region transcription start site region 56402
Stk31 6 49395604 to 49469501 73897 + protein coding gene serine threonine kinase 31
Gm17060 6 49424061 to 49424884 823 - pseudogene predicted gene 17060
Tssr60891 6 49424968 to 49424969 1 - TSS region transcription start site region 60891
Tssr56403 6 49481536 to 49481540 4 + TSS region transcription start site region 56403
Gm5305 6 49542982 to 49543727 745 - pseudogene predicted gene 5305
Tssr60892 6 49543768 to 49543770 2 - TSS region transcription start site region 60892
Tssr56404 6 49586819 to 49586842 23 + TSS region transcription start site region 56404
Tssr56405 6 49586961 to 49586982 21 + TSS region transcription start site region 56405
Rpl19-ps8 6 49596241 to 49599764 3523 + pseudogene ribosomal protein L19, pseudogene 8
Gm31226 6 49633631 to 49678455 44824 + lncRNA gene predicted gene, 31226
V25Dq5 6 49700000 to 49700000 0 QTL vitamin D inactive form serum level QTL 5
Gm44219 6 49727251 to 49727523 272 - pseudogene predicted gene, 44219
Tssr60893 6 49733491 to 49733500 9 - TSS region transcription start site region 60893