Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:49010859-52771081

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688 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr56290 6 49022962 to 49022992 30 + TSS region transcription start site region 56290
Tssr56291 6 49033037 to 49033052 15 + TSS region transcription start site region 56291
Tssr56292 6 49033122 to 49033142 20 + TSS region transcription start site region 56292
Tssr56293 6 49035987 to 49036003 16 + TSS region transcription start site region 56293
Tssr56294 6 49036013 to 49036038 25 + TSS region transcription start site region 56294
Tssr56295 6 49036068 to 49036082 14 + TSS region transcription start site region 56295
Tssr60840 6 49036470 to 49036481 11 - TSS region transcription start site region 60840
Tssr56296 6 49036497 to 49036514 17 + TSS region transcription start site region 56296
Gpnmb 6 49036518 to 49058182 21664 + protein coding gene glycoprotein (transmembrane) nmb
Tssr56297 6 49036527 to 49036540 13 + TSS region transcription start site region 56297
Tssr56298 6 49036557 to 49036564 7 + TSS region transcription start site region 56298
Tssr56299 6 49036569 to 49036580 11 + TSS region transcription start site region 56299
Tssr56300 6 49036605 to 49036625 20 + TSS region transcription start site region 56300
Tssr56301 6 49036639 to 49036658 19 + TSS region transcription start site region 56301
Tssr56302 6 49036667 to 49036705 38 + TSS region transcription start site region 56302
Tssr56303 6 49036714 to 49036718 4 + TSS region transcription start site region 56303
Tssr56304 6 49038096 to 49038140 44 + TSS region transcription start site region 56304
Tssr56305 6 49038167 to 49038207 40 + TSS region transcription start site region 56305
Tssr56306 6 49038215 to 49038232 17 + TSS region transcription start site region 56306
Tssr56307 6 49038334 to 49038348 14 + TSS region transcription start site region 56307
Tssr60841 6 49038374 to 49038379 5 - TSS region transcription start site region 60841
Tssr56308 6 49039610 to 49039613 3 + TSS region transcription start site region 56308
Tssr56309 6 49039878 to 49039907 29 + TSS region transcription start site region 56309
Tssr56310 6 49040366 to 49040374 8 + TSS region transcription start site region 56310
Tssr56311 6 49040671 to 49040684 13 + TSS region transcription start site region 56311
Tssr56312 6 49040869 to 49040882 13 + TSS region transcription start site region 56312
Tssr56313 6 49042766 to 49042801 35 + TSS region transcription start site region 56313
Tssr60842 6 49042824 to 49042835 11 - TSS region transcription start site region 60842
Tssr60843 6 49042878 to 49042891 13 - TSS region transcription start site region 60843
Tssr56314 6 49042885 to 49042894 9 + TSS region transcription start site region 56314
Tssr60844 6 49042902 to 49042909 7 - TSS region transcription start site region 60844
Tssr56315 6 49043383 to 49043390 7 + TSS region transcription start site region 56315
Tssr56316 6 49043991 to 49044007 16 + TSS region transcription start site region 56316
Tssr56317 6 49044033 to 49044057 24 + TSS region transcription start site region 56317
Tssr56318 6 49044060 to 49044113 53 + TSS region transcription start site region 56318
Tssr60845 6 49044095 to 49044149 54 - TSS region transcription start site region 60845
Tssr56319 6 49045308 to 49045317 9 + TSS region transcription start site region 56319
Tssr56320 6 49045348 to 49045357 9 + TSS region transcription start site region 56320
Tssr60846 6 49045363 to 49045392 29 - TSS region transcription start site region 60846
Tssr56321 6 49045365 to 49045371 6 + TSS region transcription start site region 56321
Tssr56322 6 49045380 to 49045389 9 + TSS region transcription start site region 56322
Tssr56323 6 49045409 to 49045425 16 + TSS region transcription start site region 56323
Tssr60847 6 49045438 to 49045475 37 - TSS region transcription start site region 60847
Tssr56324 6 49045449 to 49045455 6 + TSS region transcription start site region 56324
Tssr56325 6 49045599 to 49045611 12 + TSS region transcription start site region 56325
Tssr56326 6 49045615 to 49045626 11 + TSS region transcription start site region 56326
Tssr56327 6 49045669 to 49045680 11 + TSS region transcription start site region 56327
Tssr56328 6 49045744 to 49045758 14 + TSS region transcription start site region 56328
Tssr56329 6 49045823 to 49045834 11 + TSS region transcription start site region 56329
Tssr56330 6 49045998 to 49046005 7 + TSS region transcription start site region 56330
Tssr56331 6 49046039 to 49046050 11 + TSS region transcription start site region 56331
Tssr56332 6 49046108 to 49046123 15 + TSS region transcription start site region 56332
Tssr56333 6 49046150 to 49046161 11 + TSS region transcription start site region 56333
Tssr56334 6 49046167 to 49046171 4 + TSS region transcription start site region 56334
Tssr56335 6 49046177 to 49046191 14 + TSS region transcription start site region 56335
Tssr56336 6 49046207 to 49046218 11 + TSS region transcription start site region 56336
Tssr56337 6 49046222 to 49046241 19 + TSS region transcription start site region 56337
D6Mit142 6 49046239 to 49046438 199 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 142
Tssr56338 6 49046245 to 49046257 12 + TSS region transcription start site region 56338
Tssr56339 6 49046258 to 49046271 13 + TSS region transcription start site region 56339
Tssr60848 6 49046335 to 49046408 73 - TSS region transcription start site region 60848
D6Dcr8 6 49046349 to 49046450 101 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 8
Tssr56340 6 49046450 to 49046461 11 + TSS region transcription start site region 56340
Tssr56341 6 49046710 to 49046721 11 + TSS region transcription start site region 56341
Tssr56342 6 49046742 to 49046753 11 + TSS region transcription start site region 56342
Tssr56343 6 49047292 to 49047299 7 + TSS region transcription start site region 56343
Tssr56344 6 49047306 to 49047323 17 + TSS region transcription start site region 56344
Tssr56345 6 49047324 to 49047342 18 + TSS region transcription start site region 56345
Tssr60849 6 49047329 to 49047362 33 - TSS region transcription start site region 60849
Tssr56346 6 49047361 to 49047395 34 + TSS region transcription start site region 56346
Tssr60850 6 49047384 to 49047415 31 - TSS region transcription start site region 60850
Tssr56347 6 49047399 to 49047413 14 + TSS region transcription start site region 56347
Tssr56348 6 49047425 to 49047436 11 + TSS region transcription start site region 56348
Tssr56349 6 49047748 to 49047757 9 + TSS region transcription start site region 56349
Tssr56350 6 49047775 to 49047786 11 + TSS region transcription start site region 56350
Tssr56351 6 49047805 to 49047813 8 + TSS region transcription start site region 56351
Tssr56352 6 49047818 to 49047832 14 + TSS region transcription start site region 56352
Tssr60851 6 49047854 to 49047877 23 - TSS region transcription start site region 60851
Tssr56353 6 49047887 to 49047900 13 + TSS region transcription start site region 56353
Tssr60852 6 49047897 to 49047906 9 - TSS region transcription start site region 60852
Tssr56354 6 49047902 to 49047914 12 + TSS region transcription start site region 56354
Tssr60853 6 49047907 to 49047918 11 - TSS region transcription start site region 60853
Tssr60854 6 49047926 to 49047935 9 - TSS region transcription start site region 60854
Tssr56355 6 49047927 to 49047938 11 + TSS region transcription start site region 56355
Tssr56356 6 49047945 to 49047956 11 + TSS region transcription start site region 56356
Tssr56357 6 49047957 to 49047968 11 + TSS region transcription start site region 56357
Tssr60855 6 49047959 to 49047980 21 - TSS region transcription start site region 60855
Tssr56358 6 49047975 to 49047986 11 + TSS region transcription start site region 56358
Tssr56359 6 49047990 to 49048017 27 + TSS region transcription start site region 56359
Tssr60856 6 49047997 to 49048007 10 - TSS region transcription start site region 60856
Tssr60857 6 49048026 to 49048108 82 - TSS region transcription start site region 60857
Tssr56360 6 49048027 to 49048064 37 + TSS region transcription start site region 56360
Tssr56361 6 49049882 to 49049906 24 + TSS region transcription start site region 56361
Tssr56362 6 49050110 to 49050133 23 + TSS region transcription start site region 56362
Tssr56363 6 49050397 to 49050469 72 + TSS region transcription start site region 56363
Tssr60858 6 49050439 to 49050479 40 - TSS region transcription start site region 60858
Tssr60859 6 49050481 to 49050491 10 - TSS region transcription start site region 60859
Tssr60860 6 49050495 to 49050510 15 - TSS region transcription start site region 60860
Tssr60861 6 49050513 to 49050517 4 - TSS region transcription start site region 60861
Tssr56364 6 49051021 to 49051091 70 + TSS region transcription start site region 56364
Tssr60862 6 49051069 to 49051095 26 - TSS region transcription start site region 60862
Tssr60863 6 49051112 to 49051128 16 - TSS region transcription start site region 60863
Tssr56365 6 49051286 to 49051319 33 + TSS region transcription start site region 56365
Tssr56366 6 49051366 to 49051377 11 + TSS region transcription start site region 56366
Tssr56367 6 49051849 to 49051856 7 + TSS region transcription start site region 56367
Tssr56368 6 49051868 to 49051913 45 + TSS region transcription start site region 56368
Tssr56369 6 49051955 to 49051996 41 + TSS region transcription start site region 56369
Tssr60864 6 49051995 to 49052030 35 - TSS region transcription start site region 60864
Tssr56370 6 49052900 to 49052917 17 + TSS region transcription start site region 56370
Tssr56371 6 49052925 to 49052948 23 + TSS region transcription start site region 56371
Tssr56372 6 49053001 to 49053037 36 + TSS region transcription start site region 56372
Tssr56373 6 49053040 to 49053082 42 + TSS region transcription start site region 56373
Tssr56374 6 49055610 to 49055635 25 + TSS region transcription start site region 56374
Tssr56375 6 49056240 to 49056255 15 + TSS region transcription start site region 56375
Tssr56376 6 49056554 to 49056565 11 + TSS region transcription start site region 56376
Tssr56377 6 49056589 to 49056598 9 + TSS region transcription start site region 56377
Tssr56378 6 49056654 to 49056665 11 + TSS region transcription start site region 56378
Tssr56379 6 49056723 to 49056736 13 + TSS region transcription start site region 56379
Tssr60865 6 49056777 to 49056781 4 - TSS region transcription start site region 60865
Tssr56380 6 49059237 to 49059249 12 + TSS region transcription start site region 56380
Tssr56381 6 49059254 to 49059270 16 + TSS region transcription start site region 56381
Tssr56382 6 49059988 to 49060004 16 + TSS region transcription start site region 56382
Tssr56383 6 49060225 to 49060236 11 + TSS region transcription start site region 56383
Tssr56384 6 49061041 to 49061054 13 + TSS region transcription start site region 56384
Tssr56385 6 49062086 to 49062119 33 + TSS region transcription start site region 56385
Tssr56386 6 49068483 to 49068504 21 + TSS region transcription start site region 56386
Tssr1840 6 49068853 to 49068868 15 + TSS region transcription start site region 1840
Tssr56387 6 49069531 to 49069558 27 + TSS region transcription start site region 56387
Tssr56388 6 49071204 to 49071217 13 + TSS region transcription start site region 56388
Tssr56389 6 49071255 to 49071271 16 + TSS region transcription start site region 56389
Gm19253 6 49071630 to 49071936 306 + pseudogene predicted gene, 19253
Cpgi17380 6 49073668 to 49074458 790 CpG island CpG island 17380
Tssr1841 6 49073728 to 49073750 22 - TSS region transcription start site region 1841
Malsu1 6 49073795 to 49086751 12956 + protein coding gene mitochondrial assembly of ribosomal large subunit 1
Tssr56390 6 49073816 to 49073861 45 + TSS region transcription start site region 56390
Gm7890 6 49080462 to 49081062 600 - pseudogene predicted gene 7890
Igf2bp3 6 49085223 to 49214957 129734 - protein coding gene insulin-like growth factor 2 mRNA binding protein 3
Tssr56391 6 49087142 to 49087146 4 + TSS region transcription start site region 56391
Tssr60866 6 49110975 to 49110998 23 - TSS region transcription start site region 60866
Tssr60867 6 49111002 to 49111012 10 - TSS region transcription start site region 60867
Tssr60868 6 49111053 to 49111059 6 - TSS region transcription start site region 60868
Tssr60869 6 49111083 to 49111100 17 - TSS region transcription start site region 60869
Tssr60870 6 49111118 to 49111137 19 - TSS region transcription start site region 60870
Tssr56392 6 49111227 to 49111258 31 + TSS region transcription start site region 56392
Gm18010 6 49172759 to 49172960 201 + pseudogene predicted gene, 18010
D030074P21Rik 6 49205810 to 49212479 6669 - lncRNA gene RIKEN cDNA D030074P21 gene
Tssr60871 6 49210283 to 49210287 4 - TSS region transcription start site region 60871
Cpgi17381 6 49213481 to 49215870 2389 CpG island CpG island 17381
Tssr60872 6 49214161 to 49214179 18 - TSS region transcription start site region 60872
Tssr60873 6 49214585 to 49214592 7 - TSS region transcription start site region 60873
Tssr60874 6 49214665 to 49214676 11 - TSS region transcription start site region 60874
Tssr60875 6 49214698 to 49214721 23 - TSS region transcription start site region 60875
Tssr60876 6 49214725 to 49214748 23 - TSS region transcription start site region 60876
Tssr60877 6 49214818 to 49214827 9 - TSS region transcription start site region 60877
Tssr60878 6 49214847 to 49214856 9 - TSS region transcription start site region 60878
Tssr60879 6 49215013 to 49215022 9 - TSS region transcription start site region 60879
Tssr60880 6 49215361 to 49215377 16 - TSS region transcription start site region 60880
Tssr60881 6 49215412 to 49215470 58 - TSS region transcription start site region 60881
Cpgi17382 6 49217507 to 49218408 901 CpG island CpG island 17382
Tssr60882 6 49217958 to 49217983 25 - TSS region transcription start site region 60882
Tssr56393 6 49218281 to 49218304 23 + TSS region transcription start site region 56393
Tssr56394 6 49218311 to 49218327 16 + TSS region transcription start site region 56394
Tssr56395 6 49218440 to 49218444 4 + TSS region transcription start site region 56395
Tssr60883 6 49236509 to 49236551 42 - TSS region transcription start site region 60883
Tra2a 6 49243924 to 49264033 20109 - protein coding gene transformer 2 alpha
Tssr56396 6 49244741 to 49244744 3 + TSS region transcription start site region 56396
Tssr60884 6 49245540 to 49245574 34 - TSS region transcription start site region 60884
Tssr60885 6 49253072 to 49253085 13 - TSS region transcription start site region 60885
Tssr60886 6 49254273 to 49254288 15 - TSS region transcription start site region 60886
B230214O09Rik 6 49254848 to 49256461 1613 unclassified non-coding RNA gene RIKEN cDNA B230214O09 gene
Gm43980 6 49254851 to 49256462 1611 + unclassified gene predicted gene, 43980
Cpgi17383 6 49263100 to 49264271 1171 CpG island CpG island 17383
Tssr56397 6 49263236 to 49263257 21 + TSS region transcription start site region 56397
Tssr60887 6 49263979 to 49263990 11 - TSS region transcription start site region 60887
Tssr60888 6 49264014 to 49264060 46 - TSS region transcription start site region 60888
Gm18011 6 49286721 to 49287285 564 + pseudogene predicted gene, 18011
Cpgi17384 6 49319045 to 49319787 742 CpG island CpG island 17384
Ccdc126 6 49319274 to 49341582 22308 + protein coding gene coiled-coil domain containing 126
Tssr56398 6 49319290 to 49319367 77 + TSS region transcription start site region 56398
Tssr60889 6 49338688 to 49338695 7 - TSS region transcription start site region 60889
Tssr60890 6 49366811 to 49366823 12 - TSS region transcription start site region 60890
Fam221a 6 49367217 to 49389905 22688 + protein coding gene family with sequence similarity 221, member A
Cpgi17385 6 49367389 to 49368099 710 CpG island CpG island 17385
Tssr56399 6 49367789 to 49367866 77 + TSS region transcription start site region 56399
Tssr56400 6 49372346 to 49372383 37 + TSS region transcription start site region 56400
Cpgi17386 6 49395306 to 49395937 631 CpG island CpG island 17386
Tssr56401 6 49395532 to 49395558 26 + TSS region transcription start site region 56401
Tssr56402 6 49395559 to 49395594 35 + TSS region transcription start site region 56402
Stk31 6 49395604 to 49469501 73897 + protein coding gene serine threonine kinase 31
Gm17060 6 49424061 to 49424884 823 - pseudogene predicted gene 17060
Tssr60891 6 49424968 to 49424969 1 - TSS region transcription start site region 60891
Tssr56403 6 49481536 to 49481540 4 + TSS region transcription start site region 56403
Gm5305 6 49542982 to 49543727 745 - pseudogene predicted gene 5305
Tssr60892 6 49543768 to 49543770 2 - TSS region transcription start site region 60892
Tssr56404 6 49586819 to 49586842 23 + TSS region transcription start site region 56404
Tssr56405 6 49586961 to 49586982 21 + TSS region transcription start site region 56405
Rpl19-ps8 6 49596241 to 49599764 3523 + pseudogene ribosomal protein L19, pseudogene 8
Gm31226 6 49633631 to 49678455 44824 + lncRNA gene predicted gene, 31226
V25Dq5 6 49700000 to 49700000 0 QTL vitamin D inactive form serum level QTL 5
Gm44219 6 49727251 to 49727523 272 - pseudogene predicted gene, 44219