Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:48874798-49005127

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr56238 6 48874794 to 48874809 15 + TSS region transcription start site region 56238
Tssr56239 6 48874833 to 48874842 9 + TSS region transcription start site region 56239
Tssr56240 6 48895214 to 48895233 19 + TSS region transcription start site region 56240
Tssr56241 6 48895243 to 48895264 21 + TSS region transcription start site region 56241
Aoc1 6 48895255 to 48909187 13932 + protein coding gene amine oxidase, copper-containing 1
Tssr60821 6 48902986 to 48903006 20 - TSS region transcription start site region 60821
Tssr60822 6 48903009 to 48903020 11 - TSS region transcription start site region 60822
Tssr56242 6 48904960 to 48904973 13 + TSS region transcription start site region 56242
Tssr56243 6 48904979 to 48904991 12 + TSS region transcription start site region 56243
Tssr56244 6 48905133 to 48905143 10 + TSS region transcription start site region 56244
Cpgi17379 6 48905633 to 48905831 198 CpG island CpG island 17379
Tssr56245 6 48906082 to 48906093 11 + TSS region transcription start site region 56245
Tssr56246 6 48906095 to 48906112 17 + TSS region transcription start site region 56246
Tssr56247 6 48906156 to 48906167 11 + TSS region transcription start site region 56247
Tssr56248 6 48906534 to 48906546 12 + TSS region transcription start site region 56248
Tssr56249 6 48907665 to 48907668 3 + TSS region transcription start site region 56249
Tssr56250 6 48907676 to 48907681 5 + TSS region transcription start site region 56250
Tssr56251 6 48907707 to 48907716 9 + TSS region transcription start site region 56251
Tssr56252 6 48907728 to 48907755 27 + TSS region transcription start site region 56252
Tssr56253 6 48907797 to 48907806 9 + TSS region transcription start site region 56253
Tssr56254 6 48907812 to 48907821 9 + TSS region transcription start site region 56254
Tssr56255 6 48908835 to 48908845 10 + TSS region transcription start site region 56255
Tssr56256 6 48908847 to 48908869 22 + TSS region transcription start site region 56256
D6Mit313 6 48909196 to 48909311 115 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 313
Tssr56257 6 48929891 to 48929897 6 + TSS region transcription start site region 56257
1600015I10Rik 6 48929896 to 48933687 3791 + protein coding gene RIKEN cDNA 1600015I10 gene
Gm24348 6 48934794 to 48934923 129 + snoRNA gene predicted gene, 24348
Gm10242 6 48939798 to 48940127 329 - pseudogene predicted gene 10242
Tssr60823 6 48940180 to 48940183 3 - TSS region transcription start site region 60823
Tssr60824 6 48948881 to 48948888 7 - TSS region transcription start site region 60824
Tssr60825 6 48951454 to 48951458 4 - TSS region transcription start site region 60825
Tssr60826 6 48951510 to 48951527 17 - TSS region transcription start site region 60826
Tssr56258 6 48951869 to 48951875 6 + TSS region transcription start site region 56258
Gm18538 6 48956358 to 48956841 483 + pseudogene predicted gene, 18538
Gm19172 6 48962883 to 48964128 1245 + pseudogene predicted gene, 19172
Tssr56259 6 48974933 to 48974960 27 + TSS region transcription start site region 56259
Doxl2 6 48974963 to 48978746 3783 + protein coding gene diamine oxidase-like protein 2
Tssr60827 6 48976599 to 48976623 24 - TSS region transcription start site region 60827
Tssr56260 6 48977142 to 48977148 6 + TSS region transcription start site region 56260
Tssr56261 6 48977158 to 48977163 5 + TSS region transcription start site region 56261
Tssr56262 6 48977231 to 48977274 43 + TSS region transcription start site region 56262
Gm18539 6 48981120 to 48982209 1089 + pseudogene predicted gene, 18539
4930563H07Rik 6 48986616 to 48999616 13000 - antisense lncRNA gene RIKEN cDNA 4930563H07 gene
Svs1 6 48986861 to 48991722 4861 + protein coding gene seminal vesicle secretory protein 1
Tssr56263 6 48986896 to 48986912 16 + TSS region transcription start site region 56263
Tssr60828 6 48987334 to 48987340 6 - TSS region transcription start site region 60828
Tssr60829 6 48987426 to 48987435 9 - TSS region transcription start site region 60829
Tssr60830 6 48987444 to 48987448 4 - TSS region transcription start site region 60830
Tssr60831 6 48987459 to 48987462 3 - TSS region transcription start site region 60831
Tssr60832 6 48987716 to 48987721 5 - TSS region transcription start site region 60832
Tssr60833 6 48987731 to 48987741 10 - TSS region transcription start site region 60833
Tssr56264 6 48987845 to 48987855 10 + TSS region transcription start site region 56264
Tssr56265 6 48987858 to 48987872 14 + TSS region transcription start site region 56265
Tssr56266 6 48987887 to 48987896 9 + TSS region transcription start site region 56266
Tssr60834 6 48987934 to 48987946 12 - TSS region transcription start site region 60834
Tssr56267 6 48987949 to 48987967 18 + TSS region transcription start site region 56267
Tssr56268 6 48987969 to 48987976 7 + TSS region transcription start site region 56268
Tssr60835 6 48987980 to 48987989 9 - TSS region transcription start site region 60835
Tssr56269 6 48988002 to 48988011 9 + TSS region transcription start site region 56269
Tssr56270 6 48988028 to 48988039 11 + TSS region transcription start site region 56270
Tssr56271 6 48988061 to 48988070 9 + TSS region transcription start site region 56271
Tssr60836 6 48988063 to 48988076 13 - TSS region transcription start site region 60836
Tssr1834 6 48988072 to 48988084 12 + TSS region transcription start site region 1834
Tssr56272 6 48988114 to 48988123 9 + TSS region transcription start site region 56272
Tssr60837 6 48988168 to 48988174 6 - TSS region transcription start site region 60837
Tssr56273 6 48988168 to 48988177 9 + TSS region transcription start site region 56273
Tssr1835 6 48988191 to 48988196 5 + TSS region transcription start site region 1835
Tssr56274 6 48988245 to 48988253 8 + TSS region transcription start site region 56274
Tssr56275 6 48988273 to 48988286 13 + TSS region transcription start site region 56275
Tssr56276 6 48988293 to 48988308 15 + TSS region transcription start site region 56276
Tssr1836 6 48988381 to 48988384 3 + TSS region transcription start site region 1836
Tssr60838 6 48988482 to 48988532 50 - TSS region transcription start site region 60838
Tssr56277 6 48988504 to 48988507 3 + TSS region transcription start site region 56277
Tssr56278 6 48988508 to 48988527 19 + TSS region transcription start site region 56278
Tssr1837 6 48988535 to 48988536 1 + TSS region transcription start site region 1837
Tssr56279 6 48988546 to 48988547 1 + TSS region transcription start site region 56279
Tssr56280 6 48988573 to 48988580 7 + TSS region transcription start site region 56280
Tssr56281 6 48988624 to 48988631 7 + TSS region transcription start site region 56281
Tssr1838 6 48988657 to 48988660 3 + TSS region transcription start site region 1838
Tssr56282 6 48988763 to 48988773 10 + TSS region transcription start site region 56282
Tssr56283 6 48988794 to 48988807 13 + TSS region transcription start site region 56283
Tssr56284 6 48988818 to 48988819 1 + TSS region transcription start site region 56284
Tssr56285 6 48988848 to 48988858 10 + TSS region transcription start site region 56285
Tssr56286 6 48988887 to 48988899 12 + TSS region transcription start site region 56286
Tssr1839 6 48990171 to 48990173 2 + TSS region transcription start site region 1839
Tssr56287 6 48990183 to 48990200 17 + TSS region transcription start site region 56287
Tssr56288 6 48990202 to 48990216 14 + TSS region transcription start site region 56288
Tssr56289 6 48990225 to 48990238 13 + TSS region transcription start site region 56289
Tssr60839 6 48990235 to 48990242 7 - TSS region transcription start site region 60839
Gm19173 6 48995224 to 48997653 2429 + pseudogene predicted gene, 19173