Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:48740224-49252653

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354 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm28053 6 48718607 to 48752644 34037 + protein coding gene predicted gene, 28053
Gimap1os 6 48738346 to 48741444 3098 - unclassified non-coding RNA gene GTPase, IMAP family member 1, opposite strand
Gimap1 6 48739054 to 48743795 4741 + protein coding gene GTPase, IMAP family member 1
Tssr60773 6 48740613 to 48740632 19 - TSS region transcription start site region 60773
Tssr60774 6 48740764 to 48740774 10 - TSS region transcription start site region 60774
Tssr60775 6 48741328 to 48741344 16 - TSS region transcription start site region 60775
Tssr60776 6 48741434 to 48741449 15 - TSS region transcription start site region 60776
Tssr60777 6 48741462 to 48741473 11 - TSS region transcription start site region 60777
Tssr60778 6 48742010 to 48742030 20 - TSS region transcription start site region 60778
Cpgi17377 6 48742563 to 48743289 726 CpG island CpG island 17377
Tssr60779 6 48746094 to 48746104 10 - TSS region transcription start site region 60779
Tssr56207 6 48746169 to 48746180 11 + TSS region transcription start site region 56207
Tssr56208 6 48746188 to 48746212 24 + TSS region transcription start site region 56208
Gimap5 6 48746197 to 48754210 8013 + protein coding gene GTPase, IMAP family member 5
Tssr56209 6 48746223 to 48746234 11 + TSS region transcription start site region 56209
Tssr56210 6 48746237 to 48746302 65 + TSS region transcription start site region 56210
Tssr56211 6 48746707 to 48746718 11 + TSS region transcription start site region 56211
Tssr60780 6 48747501 to 48747519 18 - TSS region transcription start site region 60780
Tssr60781 6 48747535 to 48747547 12 - TSS region transcription start site region 60781
Tssr1832 6 48747663 to 48747679 16 - TSS region transcription start site region 1832
Tssr60782 6 48747741 to 48747755 14 - TSS region transcription start site region 60782
Tssr56212 6 48747924 to 48747957 33 + TSS region transcription start site region 56212
Gm44226 6 48754230 to 48755986 1756 - lincRNA gene predicted gene, 44226
4833403J16Rik 6 48755338 to 48756368 1030 + lincRNA gene RIKEN cDNA 4833403J16 gene
Gimap3 6 48764464 to 48770851 6387 - protein coding gene GTPase, IMAP family member 3
Tssr56213 6 48768749 to 48768769 20 + TSS region transcription start site region 56213
Tssr60783 6 48770735 to 48770741 6 - TSS region transcription start site region 60783
Tssr60784 6 48770744 to 48770762 18 - TSS region transcription start site region 60784
Tssr60785 6 48770773 to 48770791 18 - TSS region transcription start site region 60785
Tssr60786 6 48770806 to 48770822 16 - TSS region transcription start site region 60786
Tssr60787 6 48770823 to 48770830 7 - TSS region transcription start site region 60787
Tssr60788 6 48770833 to 48770884 51 - TSS region transcription start site region 60788
Tssr60789 6 48770886 to 48770892 6 - TSS region transcription start site region 60789
Tssr56214 6 48770982 to 48771010 28 + TSS region transcription start site region 56214
Tssr56215 6 48771039 to 48771065 26 + TSS region transcription start site region 56215
Gm30714 6 48790997 to 48793777 2780 - lncRNA gene predicted gene, 30714
Gm30781 6 48798280 to 48798826 546 - lincRNA gene predicted gene, 30781
Gm17834 6 48819024 to 48819602 578 + pseudogene predicted gene, 17834
Tmem176b 6 48833818 to 48841496 7678 - protein coding gene transmembrane protein 176B
Tssr56216 6 48833824 to 48833840 16 + TSS region transcription start site region 56216
Tssr60790 6 48833924 to 48833933 9 - TSS region transcription start site region 60790
Tssr60791 6 48833965 to 48833995 30 - TSS region transcription start site region 60791
Tssr60792 6 48833999 to 48834014 15 - TSS region transcription start site region 60792
Tssr56217 6 48834028 to 48834060 32 + TSS region transcription start site region 56217
Tssr60793 6 48834042 to 48834125 83 - TSS region transcription start site region 60793
Tssr1833 6 48834138 to 48834145 7 - TSS region transcription start site region 1833
Tssr60794 6 48834535 to 48834581 46 - TSS region transcription start site region 60794
Tssr60795 6 48835572 to 48835595 23 - TSS region transcription start site region 60795
Tssr60796 6 48835596 to 48835678 82 - TSS region transcription start site region 60796
Tssr60797 6 48835942 to 48835971 29 - TSS region transcription start site region 60797
Tssr60798 6 48836256 to 48836282 26 - TSS region transcription start site region 60798
Tssr60799 6 48836283 to 48836301 18 - TSS region transcription start site region 60799
Tssr60800 6 48836306 to 48836321 15 - TSS region transcription start site region 60800
Tssr60801 6 48836328 to 48836343 15 - TSS region transcription start site region 60801
Tssr60802 6 48840457 to 48840466 9 - TSS region transcription start site region 60802
Tssr60803 6 48840473 to 48840479 6 - TSS region transcription start site region 60803
Tssr60804 6 48840487 to 48840492 5 - TSS region transcription start site region 60804
Tssr60805 6 48840538 to 48840550 12 - TSS region transcription start site region 60805
Tssr60806 6 48840552 to 48840583 31 - TSS region transcription start site region 60806
Tssr60807 6 48840600 to 48840614 14 - TSS region transcription start site region 60807
Tssr60808 6 48840720 to 48840731 11 - TSS region transcription start site region 60808
Tssr60809 6 48840742 to 48840757 15 - TSS region transcription start site region 60809
Tssr60810 6 48840759 to 48840770 11 - TSS region transcription start site region 60810
Tssr60811 6 48840771 to 48840786 15 - TSS region transcription start site region 60811
Tssr60812 6 48841018 to 48841035 17 - TSS region transcription start site region 60812
Tssr60813 6 48841046 to 48841057 11 - TSS region transcription start site region 60813
Tssr60814 6 48841072 to 48841095 23 - TSS region transcription start site region 60814
Tssr60815 6 48841098 to 48841139 41 - TSS region transcription start site region 60815
Tssr60816 6 48841373 to 48841412 39 - TSS region transcription start site region 60816
Tssr60817 6 48841416 to 48841421 5 - TSS region transcription start site region 60817
Tssr60818 6 48841430 to 48841435 5 - TSS region transcription start site region 60818
Tssr60819 6 48841437 to 48841451 14 - TSS region transcription start site region 60819
Tssr56218 6 48841476 to 48841553 77 + TSS region transcription start site region 56218
Tmem176a 6 48841483 to 48845364 3881 + protein coding gene transmembrane protein 176A
Tssr60820 6 48841515 to 48841559 44 - TSS region transcription start site region 60820
Tssr56219 6 48841557 to 48841568 11 + TSS region transcription start site region 56219
Tssr56220 6 48841633 to 48841644 11 + TSS region transcription start site region 56220
Tssr56221 6 48842624 to 48842638 14 + TSS region transcription start site region 56221
Tssr56222 6 48842669 to 48842680 11 + TSS region transcription start site region 56222
Tssr56223 6 48843949 to 48844015 66 + TSS region transcription start site region 56223
Tssr56224 6 48844084 to 48844113 29 + TSS region transcription start site region 56224
Tssr56225 6 48845126 to 48845157 31 + TSS region transcription start site region 56225
Tssr56226 6 48845158 to 48845177 19 + TSS region transcription start site region 56226
Tssr56227 6 48845198 to 48845242 44 + TSS region transcription start site region 56227
Tssr56228 6 48845962 to 48845985 23 + TSS region transcription start site region 56228
Tssr56229 6 48846034 to 48846052 18 + TSS region transcription start site region 56229
Tssr56230 6 48846104 to 48846115 11 + TSS region transcription start site region 56230
Gm44764 6 48847659 to 48863107 15448 - lncRNA gene predicted gene 44764
Cpgi17378 6 48852283 to 48852488 205 CpG island CpG island 17378
Gm7932 6 48859900 to 48865077 5177 + lincRNA gene predicted gene 7932
Tssr56231 6 48860316 to 48860338 22 + TSS region transcription start site region 56231
Tssr56232 6 48860339 to 48860358 19 + TSS region transcription start site region 56232
Tssr56233 6 48860379 to 48860405 26 + TSS region transcription start site region 56233
Tssr56234 6 48872836 to 48872860 24 + TSS region transcription start site region 56234
Tssr56235 6 48872871 to 48872885 14 + TSS region transcription start site region 56235
Tssr56236 6 48872943 to 48872954 11 + TSS region transcription start site region 56236
Tssr56237 6 48874181 to 48874192 11 + TSS region transcription start site region 56237
Tssr56238 6 48874794 to 48874809 15 + TSS region transcription start site region 56238
Tssr56239 6 48874833 to 48874842 9 + TSS region transcription start site region 56239
Tssr56240 6 48895214 to 48895233 19 + TSS region transcription start site region 56240
Tssr56241 6 48895243 to 48895264 21 + TSS region transcription start site region 56241
Aoc1 6 48895255 to 48909187 13932 + protein coding gene amine oxidase, copper-containing 1
Tssr60821 6 48902986 to 48903006 20 - TSS region transcription start site region 60821
Tssr60822 6 48903009 to 48903020 11 - TSS region transcription start site region 60822
Tssr56242 6 48904960 to 48904973 13 + TSS region transcription start site region 56242
Tssr56243 6 48904979 to 48904991 12 + TSS region transcription start site region 56243
Tssr56244 6 48905133 to 48905143 10 + TSS region transcription start site region 56244
Cpgi17379 6 48905633 to 48905831 198 CpG island CpG island 17379
Tssr56245 6 48906082 to 48906093 11 + TSS region transcription start site region 56245
Tssr56246 6 48906095 to 48906112 17 + TSS region transcription start site region 56246
Tssr56247 6 48906156 to 48906167 11 + TSS region transcription start site region 56247
Tssr56248 6 48906534 to 48906546 12 + TSS region transcription start site region 56248
Tssr56249 6 48907665 to 48907668 3 + TSS region transcription start site region 56249
Tssr56250 6 48907676 to 48907681 5 + TSS region transcription start site region 56250
Tssr56251 6 48907707 to 48907716 9 + TSS region transcription start site region 56251
Tssr56252 6 48907728 to 48907755 27 + TSS region transcription start site region 56252
Tssr56253 6 48907797 to 48907806 9 + TSS region transcription start site region 56253
Tssr56254 6 48907812 to 48907821 9 + TSS region transcription start site region 56254
Tssr56255 6 48908835 to 48908845 10 + TSS region transcription start site region 56255
Tssr56256 6 48908847 to 48908869 22 + TSS region transcription start site region 56256
D6Mit313 6 48909196 to 48909311 115 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 313
Tssr56257 6 48929891 to 48929897 6 + TSS region transcription start site region 56257
1600015I10Rik 6 48929896 to 48933687 3791 + protein coding gene RIKEN cDNA 1600015I10 gene
Gm24348 6 48934794 to 48934923 129 + snoRNA gene predicted gene, 24348
Gm10242 6 48939798 to 48940127 329 - pseudogene predicted gene 10242
Tssr60823 6 48940180 to 48940183 3 - TSS region transcription start site region 60823
Tssr60824 6 48948881 to 48948888 7 - TSS region transcription start site region 60824
Tssr60825 6 48951454 to 48951458 4 - TSS region transcription start site region 60825
Tssr60826 6 48951510 to 48951527 17 - TSS region transcription start site region 60826
Tssr56258 6 48951869 to 48951875 6 + TSS region transcription start site region 56258
Gm18538 6 48956358 to 48956841 483 + pseudogene predicted gene, 18538
Gm19172 6 48962883 to 48964128 1245 + pseudogene predicted gene, 19172
Tssr56259 6 48974933 to 48974960 27 + TSS region transcription start site region 56259
Doxl2 6 48974963 to 48978746 3783 + protein coding gene diamine oxidase-like protein 2
Tssr60827 6 48976599 to 48976623 24 - TSS region transcription start site region 60827
Tssr56260 6 48977142 to 48977148 6 + TSS region transcription start site region 56260
Tssr56261 6 48977158 to 48977163 5 + TSS region transcription start site region 56261
Tssr56262 6 48977231 to 48977274 43 + TSS region transcription start site region 56262
Gm18539 6 48981120 to 48982209 1089 + pseudogene predicted gene, 18539
4930563H07Rik 6 48986616 to 48999616 13000 - antisense lncRNA gene RIKEN cDNA 4930563H07 gene
Svs1 6 48986861 to 48991722 4861 + protein coding gene seminal vesicle secretory protein 1
Tssr56263 6 48986896 to 48986912 16 + TSS region transcription start site region 56263
Tssr60828 6 48987334 to 48987340 6 - TSS region transcription start site region 60828
Tssr60829 6 48987426 to 48987435 9 - TSS region transcription start site region 60829
Tssr60830 6 48987444 to 48987448 4 - TSS region transcription start site region 60830
Tssr60831 6 48987459 to 48987462 3 - TSS region transcription start site region 60831
Tssr60832 6 48987716 to 48987721 5 - TSS region transcription start site region 60832
Tssr60833 6 48987731 to 48987741 10 - TSS region transcription start site region 60833
Tssr56264 6 48987845 to 48987855 10 + TSS region transcription start site region 56264
Tssr56265 6 48987858 to 48987872 14 + TSS region transcription start site region 56265
Tssr56266 6 48987887 to 48987896 9 + TSS region transcription start site region 56266
Tssr60834 6 48987934 to 48987946 12 - TSS region transcription start site region 60834
Tssr56267 6 48987949 to 48987967 18 + TSS region transcription start site region 56267
Tssr56268 6 48987969 to 48987976 7 + TSS region transcription start site region 56268
Tssr60835 6 48987980 to 48987989 9 - TSS region transcription start site region 60835
Tssr56269 6 48988002 to 48988011 9 + TSS region transcription start site region 56269
Tssr56270 6 48988028 to 48988039 11 + TSS region transcription start site region 56270
Tssr56271 6 48988061 to 48988070 9 + TSS region transcription start site region 56271
Tssr60836 6 48988063 to 48988076 13 - TSS region transcription start site region 60836
Tssr1834 6 48988072 to 48988084 12 + TSS region transcription start site region 1834
Tssr56272 6 48988114 to 48988123 9 + TSS region transcription start site region 56272
Tssr56273 6 48988168 to 48988177 9 + TSS region transcription start site region 56273
Tssr60837 6 48988168 to 48988174 6 - TSS region transcription start site region 60837
Tssr1835 6 48988191 to 48988196 5 + TSS region transcription start site region 1835
Tssr56274 6 48988245 to 48988253 8 + TSS region transcription start site region 56274
Tssr56275 6 48988273 to 48988286 13 + TSS region transcription start site region 56275
Tssr56276 6 48988293 to 48988308 15 + TSS region transcription start site region 56276
Tssr1836 6 48988381 to 48988384 3 + TSS region transcription start site region 1836
Tssr60838 6 48988482 to 48988532 50 - TSS region transcription start site region 60838
Tssr56277 6 48988504 to 48988507 3 + TSS region transcription start site region 56277
Tssr56278 6 48988508 to 48988527 19 + TSS region transcription start site region 56278
Tssr1837 6 48988535 to 48988536 1 + TSS region transcription start site region 1837
Tssr56279 6 48988546 to 48988547 1 + TSS region transcription start site region 56279
Tssr56280 6 48988573 to 48988580 7 + TSS region transcription start site region 56280
Tssr56281 6 48988624 to 48988631 7 + TSS region transcription start site region 56281
Tssr1838 6 48988657 to 48988660 3 + TSS region transcription start site region 1838
Tssr56282 6 48988763 to 48988773 10 + TSS region transcription start site region 56282
Tssr56283 6 48988794 to 48988807 13 + TSS region transcription start site region 56283
Tssr56284 6 48988818 to 48988819 1 + TSS region transcription start site region 56284
Tssr56285 6 48988848 to 48988858 10 + TSS region transcription start site region 56285
Tssr56286 6 48988887 to 48988899 12 + TSS region transcription start site region 56286
Tssr1839 6 48990171 to 48990173 2 + TSS region transcription start site region 1839
Tssr56287 6 48990183 to 48990200 17 + TSS region transcription start site region 56287
Tssr56288 6 48990202 to 48990216 14 + TSS region transcription start site region 56288
Tssr56289 6 48990225 to 48990238 13 + TSS region transcription start site region 56289
Tssr60839 6 48990235 to 48990242 7 - TSS region transcription start site region 60839
Gm19173 6 48995224 to 48997653 2429 + pseudogene predicted gene, 19173
Tssr56290 6 49022962 to 49022992 30 + TSS region transcription start site region 56290
Tssr56291 6 49033037 to 49033052 15 + TSS region transcription start site region 56291
Tssr56292 6 49033122 to 49033142 20 + TSS region transcription start site region 56292
Tssr56293 6 49035987 to 49036003 16 + TSS region transcription start site region 56293
Tssr56294 6 49036013 to 49036038 25 + TSS region transcription start site region 56294
Tssr56295 6 49036068 to 49036082 14 + TSS region transcription start site region 56295
Tssr60840 6 49036470 to 49036481 11 - TSS region transcription start site region 60840
Tssr56296 6 49036497 to 49036514 17 + TSS region transcription start site region 56296
Gpnmb 6 49036518 to 49058182 21664 + protein coding gene glycoprotein (transmembrane) nmb
Tssr56297 6 49036527 to 49036540 13 + TSS region transcription start site region 56297
Tssr56298 6 49036557 to 49036564 7 + TSS region transcription start site region 56298
Tssr56299 6 49036569 to 49036580 11 + TSS region transcription start site region 56299
Tssr56300 6 49036605 to 49036625 20 + TSS region transcription start site region 56300