Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:48720572-48950595

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162 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bmiq3 6 4503823 to 48726677 44222854 QTL body mass index QTL 3
Axtq2 6 4503823 to 48726677 44222854 QTL anxiety QTL 2
Aaj2 6 4503823 to 48726677 44222854 QTL anxiety in A/J 2
Gm28053 6 48718607 to 48752644 34037 + protein coding gene predicted gene, 28053
Gimap7 6 48718621 to 48724636 6015 + protein coding gene GTPase, IMAP family member 7
Tssr60759 6 48723622 to 48723660 38 - TSS region transcription start site region 60759
Tssr60760 6 48725561 to 48725603 42 - TSS region transcription start site region 60760
Tssr56196 6 48725781 to 48725793 12 + TSS region transcription start site region 56196
D6Mit74 6 48726556 to 48726705 149 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 74
Srilp 6 48726556 to 75447710 26721154 QTL sleep response to influenza, light phase
D6Mit274 6 48726565 to 48726677 112 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 274
Obrq4 6 48726565 to 48726677 112 QTL obesity resistance QTL 4
Tssr56197 6 48728079 to 48728086 7 + TSS region transcription start site region 56197
Tssr56198 6 48728141 to 48728157 16 + TSS region transcription start site region 56198
Tssr56199 6 48728163 to 48728174 11 + TSS region transcription start site region 56199
Tssr56200 6 48728184 to 48728192 8 + TSS region transcription start site region 56200
A130009E19Rik 6 48729549 to 48733665 4116 unclassified gene RIKEN cDNA A130009E19 gene
Tssr60761 6 48732669 to 48732683 14 - TSS region transcription start site region 60761
Tssr60762 6 48737022 to 48737065 43 - TSS region transcription start site region 60762
Tssr60763 6 48737111 to 48737123 12 - TSS region transcription start site region 60763
Tssr56201 6 48737332 to 48737340 8 + TSS region transcription start site region 56201
Tssr56202 6 48737364 to 48737394 30 + TSS region transcription start site region 56202
Tssr60764 6 48737900 to 48737931 31 - TSS region transcription start site region 60764
Gimap1os 6 48738346 to 48741444 3098 - unclassified non-coding RNA gene GTPase, IMAP family member 1, opposite strand
Tssr60765 6 48738883 to 48738899 16 - TSS region transcription start site region 60765
Tssr60766 6 48738905 to 48738913 8 - TSS region transcription start site region 60766
Tssr60767 6 48738917 to 48738932 15 - TSS region transcription start site region 60767
Tssr60768 6 48738952 to 48738966 14 - TSS region transcription start site region 60768
Tssr56203 6 48739006 to 48739019 13 + TSS region transcription start site region 56203
Tssr56204 6 48739039 to 48739096 57 + TSS region transcription start site region 56204
Gimap1 6 48739054 to 48743795 4741 + protein coding gene GTPase, IMAP family member 1
Tssr60769 6 48739187 to 48739204 17 - TSS region transcription start site region 60769
Tssr60770 6 48739207 to 48739221 14 - TSS region transcription start site region 60770
Tssr60771 6 48739244 to 48739255 11 - TSS region transcription start site region 60771
Tssr60772 6 48739459 to 48739463 4 - TSS region transcription start site region 60772
Tssr56205 6 48739868 to 48739877 9 + TSS region transcription start site region 56205
Tssr56206 6 48740012 to 48740024 12 + TSS region transcription start site region 56206
Tssr60773 6 48740613 to 48740632 19 - TSS region transcription start site region 60773
Tssr60774 6 48740764 to 48740774 10 - TSS region transcription start site region 60774
Tssr60775 6 48741328 to 48741344 16 - TSS region transcription start site region 60775
Tssr60776 6 48741434 to 48741449 15 - TSS region transcription start site region 60776
Tssr60777 6 48741462 to 48741473 11 - TSS region transcription start site region 60777
Tssr60778 6 48742010 to 48742030 20 - TSS region transcription start site region 60778
Cpgi17377 6 48742563 to 48743289 726 CpG island CpG island 17377
Tssr60779 6 48746094 to 48746104 10 - TSS region transcription start site region 60779
Tssr56207 6 48746169 to 48746180 11 + TSS region transcription start site region 56207
Tssr56208 6 48746188 to 48746212 24 + TSS region transcription start site region 56208
Gimap5 6 48746197 to 48754210 8013 + protein coding gene GTPase, IMAP family member 5
Tssr56209 6 48746223 to 48746234 11 + TSS region transcription start site region 56209
Tssr56210 6 48746237 to 48746302 65 + TSS region transcription start site region 56210
Tssr56211 6 48746707 to 48746718 11 + TSS region transcription start site region 56211
Tssr60780 6 48747501 to 48747519 18 - TSS region transcription start site region 60780
Tssr60781 6 48747535 to 48747547 12 - TSS region transcription start site region 60781
Tssr1832 6 48747663 to 48747679 16 - TSS region transcription start site region 1832
Tssr60782 6 48747741 to 48747755 14 - TSS region transcription start site region 60782
Tssr56212 6 48747924 to 48747957 33 + TSS region transcription start site region 56212
Gm44226 6 48754230 to 48755986 1756 - lincRNA gene predicted gene, 44226
4833403J16Rik 6 48755338 to 48756368 1030 + lincRNA gene RIKEN cDNA 4833403J16 gene
Gimap3 6 48764464 to 48770851 6387 - protein coding gene GTPase, IMAP family member 3
Tssr56213 6 48768749 to 48768769 20 + TSS region transcription start site region 56213
Tssr60783 6 48770735 to 48770741 6 - TSS region transcription start site region 60783
Tssr60784 6 48770744 to 48770762 18 - TSS region transcription start site region 60784
Tssr60785 6 48770773 to 48770791 18 - TSS region transcription start site region 60785
Tssr60786 6 48770806 to 48770822 16 - TSS region transcription start site region 60786
Tssr60787 6 48770823 to 48770830 7 - TSS region transcription start site region 60787
Tssr60788 6 48770833 to 48770884 51 - TSS region transcription start site region 60788
Tssr60789 6 48770886 to 48770892 6 - TSS region transcription start site region 60789
Tssr56214 6 48770982 to 48771010 28 + TSS region transcription start site region 56214
Tssr56215 6 48771039 to 48771065 26 + TSS region transcription start site region 56215
Gm30714 6 48790997 to 48793777 2780 - lncRNA gene predicted gene, 30714
Gm30781 6 48798280 to 48798826 546 - lincRNA gene predicted gene, 30781
Gm17834 6 48819024 to 48819602 578 + pseudogene predicted gene, 17834
Tmem176b 6 48833818 to 48841496 7678 - protein coding gene transmembrane protein 176B
Tssr56216 6 48833824 to 48833840 16 + TSS region transcription start site region 56216
Tssr60790 6 48833924 to 48833933 9 - TSS region transcription start site region 60790
Tssr60791 6 48833965 to 48833995 30 - TSS region transcription start site region 60791
Tssr60792 6 48833999 to 48834014 15 - TSS region transcription start site region 60792
Tssr56217 6 48834028 to 48834060 32 + TSS region transcription start site region 56217
Tssr60793 6 48834042 to 48834125 83 - TSS region transcription start site region 60793
Tssr1833 6 48834138 to 48834145 7 - TSS region transcription start site region 1833
Tssr60794 6 48834535 to 48834581 46 - TSS region transcription start site region 60794
Tssr60795 6 48835572 to 48835595 23 - TSS region transcription start site region 60795
Tssr60796 6 48835596 to 48835678 82 - TSS region transcription start site region 60796
Tssr60797 6 48835942 to 48835971 29 - TSS region transcription start site region 60797
Tssr60798 6 48836256 to 48836282 26 - TSS region transcription start site region 60798
Tssr60799 6 48836283 to 48836301 18 - TSS region transcription start site region 60799
Tssr60800 6 48836306 to 48836321 15 - TSS region transcription start site region 60800
Tssr60801 6 48836328 to 48836343 15 - TSS region transcription start site region 60801
Tssr60802 6 48840457 to 48840466 9 - TSS region transcription start site region 60802
Tssr60803 6 48840473 to 48840479 6 - TSS region transcription start site region 60803
Tssr60804 6 48840487 to 48840492 5 - TSS region transcription start site region 60804
Tssr60805 6 48840538 to 48840550 12 - TSS region transcription start site region 60805
Tssr60806 6 48840552 to 48840583 31 - TSS region transcription start site region 60806
Tssr60807 6 48840600 to 48840614 14 - TSS region transcription start site region 60807
Tssr60808 6 48840720 to 48840731 11 - TSS region transcription start site region 60808
Tssr60809 6 48840742 to 48840757 15 - TSS region transcription start site region 60809
Tssr60810 6 48840759 to 48840770 11 - TSS region transcription start site region 60810
Tssr60811 6 48840771 to 48840786 15 - TSS region transcription start site region 60811
Tssr60812 6 48841018 to 48841035 17 - TSS region transcription start site region 60812
Tssr60813 6 48841046 to 48841057 11 - TSS region transcription start site region 60813
Tssr60814 6 48841072 to 48841095 23 - TSS region transcription start site region 60814
Tssr60815 6 48841098 to 48841139 41 - TSS region transcription start site region 60815
Tssr60816 6 48841373 to 48841412 39 - TSS region transcription start site region 60816
Tssr60817 6 48841416 to 48841421 5 - TSS region transcription start site region 60817
Tssr60818 6 48841430 to 48841435 5 - TSS region transcription start site region 60818
Tssr60819 6 48841437 to 48841451 14 - TSS region transcription start site region 60819
Tssr56218 6 48841476 to 48841553 77 + TSS region transcription start site region 56218
Tmem176a 6 48841483 to 48845364 3881 + protein coding gene transmembrane protein 176A
Tssr60820 6 48841515 to 48841559 44 - TSS region transcription start site region 60820
Tssr56219 6 48841557 to 48841568 11 + TSS region transcription start site region 56219
Tssr56220 6 48841633 to 48841644 11 + TSS region transcription start site region 56220
Tssr56221 6 48842624 to 48842638 14 + TSS region transcription start site region 56221
Tssr56222 6 48842669 to 48842680 11 + TSS region transcription start site region 56222
Tssr56223 6 48843949 to 48844015 66 + TSS region transcription start site region 56223
Tssr56224 6 48844084 to 48844113 29 + TSS region transcription start site region 56224
Tssr56225 6 48845126 to 48845157 31 + TSS region transcription start site region 56225
Tssr56226 6 48845158 to 48845177 19 + TSS region transcription start site region 56226
Tssr56227 6 48845198 to 48845242 44 + TSS region transcription start site region 56227
Tssr56228 6 48845962 to 48845985 23 + TSS region transcription start site region 56228
Tssr56229 6 48846034 to 48846052 18 + TSS region transcription start site region 56229
Tssr56230 6 48846104 to 48846115 11 + TSS region transcription start site region 56230
Gm44764 6 48847659 to 48863107 15448 - lncRNA gene predicted gene 44764
Cpgi17378 6 48852283 to 48852488 205 CpG island CpG island 17378
Gm7932 6 48859900 to 48865077 5177 + lincRNA gene predicted gene 7932
Tssr56231 6 48860316 to 48860338 22 + TSS region transcription start site region 56231
Tssr56232 6 48860339 to 48860358 19 + TSS region transcription start site region 56232
Tssr56233 6 48860379 to 48860405 26 + TSS region transcription start site region 56233
Tssr56234 6 48872836 to 48872860 24 + TSS region transcription start site region 56234
Tssr56235 6 48872871 to 48872885 14 + TSS region transcription start site region 56235
Tssr56236 6 48872943 to 48872954 11 + TSS region transcription start site region 56236
Tssr56237 6 48874181 to 48874192 11 + TSS region transcription start site region 56237
Tssr56238 6 48874794 to 48874809 15 + TSS region transcription start site region 56238
Tssr56239 6 48874833 to 48874842 9 + TSS region transcription start site region 56239
Tssr56240 6 48895214 to 48895233 19 + TSS region transcription start site region 56240
Tssr56241 6 48895243 to 48895264 21 + TSS region transcription start site region 56241
Aoc1 6 48895255 to 48909187 13932 + protein coding gene amine oxidase, copper-containing 1
Tssr60821 6 48902986 to 48903006 20 - TSS region transcription start site region 60821
Tssr60822 6 48903009 to 48903020 11 - TSS region transcription start site region 60822
Tssr56242 6 48904960 to 48904973 13 + TSS region transcription start site region 56242
Tssr56243 6 48904979 to 48904991 12 + TSS region transcription start site region 56243
Tssr56244 6 48905133 to 48905143 10 + TSS region transcription start site region 56244
Cpgi17379 6 48905633 to 48905831 198 CpG island CpG island 17379
Tssr56245 6 48906082 to 48906093 11 + TSS region transcription start site region 56245
Tssr56246 6 48906095 to 48906112 17 + TSS region transcription start site region 56246
Tssr56247 6 48906156 to 48906167 11 + TSS region transcription start site region 56247
Tssr56248 6 48906534 to 48906546 12 + TSS region transcription start site region 56248
Tssr56249 6 48907665 to 48907668 3 + TSS region transcription start site region 56249
Tssr56250 6 48907676 to 48907681 5 + TSS region transcription start site region 56250
Tssr56251 6 48907707 to 48907716 9 + TSS region transcription start site region 56251
Tssr56252 6 48907728 to 48907755 27 + TSS region transcription start site region 56252
Tssr56253 6 48907797 to 48907806 9 + TSS region transcription start site region 56253
Tssr56254 6 48907812 to 48907821 9 + TSS region transcription start site region 56254
Tssr56255 6 48908835 to 48908845 10 + TSS region transcription start site region 56255
Tssr56256 6 48908847 to 48908869 22 + TSS region transcription start site region 56256
D6Mit313 6 48909196 to 48909311 115 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 313
Tssr56257 6 48929891 to 48929897 6 + TSS region transcription start site region 56257
1600015I10Rik 6 48929896 to 48933687 3791 + protein coding gene RIKEN cDNA 1600015I10 gene
Gm24348 6 48934794 to 48934923 129 + snoRNA gene predicted gene, 24348
Gm10242 6 48939798 to 48940127 329 - pseudogene predicted gene 10242
Tssr60823 6 48940180 to 48940183 3 - TSS region transcription start site region 60823
Tssr60824 6 48948881 to 48948888 7 - TSS region transcription start site region 60824
Eila2 6 125356785 to 48726556 -76630229 QTL ethanol induced locomotor activity 2