Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:48471557-49211568

Filter by:
493 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Aaj2 6 4503823 to 48726677 44222854 QTL anxiety in A/J 2
Axtq2 6 4503823 to 48726677 44222854 QTL anxiety QTL 2
Bmiq3 6 4503823 to 48726677 44222854 QTL body mass index QTL 3
Sspo 6 48448229 to 48501250 53021 + protein coding gene SCO-spondin
Tssr56129 6 48478698 to 48478711 13 + TSS region transcription start site region 56129
Cpgi17368 6 48504182 to 48504595 413 CpG island CpG island 17368
Tssr56130 6 48504330 to 48504406 76 + TSS region transcription start site region 56130
Zfp862-ps 6 48504339 to 48534832 30493 + pseudogene zinc finger protein 862, pseudogene
Tssr56131 6 48508334 to 48508354 20 + TSS region transcription start site region 56131
Tssr56132 6 48523446 to 48523455 9 + TSS region transcription start site region 56132
Gm10243 6 48523518 to 48523850 332 + pseudogene predicted gene 10243
Gm7887 6 48524554 to 48525090 536 - pseudogene predicted gene 7887
1700026J14Rik 6 48536582 to 48537474 892 - lincRNA gene RIKEN cDNA 1700026J14 gene
Cpgi17369 6 48537440 to 48537975 535 CpG island CpG island 17369
Tssr56133 6 48537560 to 48537622 62 + TSS region transcription start site region 56133
Atp6v0e2 6 48537615 to 48541801 4186 + protein coding gene ATPase, H+ transporting, lysosomal V0 subunit E2
Tssr56134 6 48537631 to 48537733 102 + TSS region transcription start site region 56134
Tssr56135 6 48537755 to 48537768 13 + TSS region transcription start site region 56135
Tssr56136 6 48540488 to 48540500 12 + TSS region transcription start site region 56136
Cpgi17370 6 48554457 to 48555013 556 CpG island CpG island 17370
Tssr60734 6 48554657 to 48554666 9 - TSS region transcription start site region 60734
Tssr60735 6 48554674 to 48554687 13 - TSS region transcription start site region 60735
Tssr60736 6 48554717 to 48554731 14 - TSS region transcription start site region 60736
Tssr56137 6 48554776 to 48554845 69 + TSS region transcription start site region 56137
Lrrc61 6 48554796 to 48570722 15926 + protein coding gene leucine rich repeat containing 61
Tssr56138 6 48554930 to 48554962 32 + TSS region transcription start site region 56138
Rarres2 6 48569696 to 48572789 3093 - protein coding gene retinoic acid receptor responder (tazarotene induced) 2
Tssr60737 6 48572660 to 48572677 17 - TSS region transcription start site region 60737
Tssr60738 6 48572766 to 48572777 11 - TSS region transcription start site region 60738
Tssr60739 6 48572823 to 48572826 3 - TSS region transcription start site region 60739
Tssr60740 6 48588451 to 48588456 5 - TSS region transcription start site region 60740
Gm5111 6 48589445 to 48590584 1139 + protein coding gene predicted gene 5111
Tssr56139 6 48589450 to 48589468 18 + TSS region transcription start site region 56139
Tssr56140 6 48589484 to 48589499 15 + TSS region transcription start site region 56140
Tssr56141 6 48589506 to 48589528 22 + TSS region transcription start site region 56141
Tssr56142 6 48589546 to 48589555 9 + TSS region transcription start site region 56142
Tssr56143 6 48589560 to 48589580 20 + TSS region transcription start site region 56143
Tssr56144 6 48589606 to 48589636 30 + TSS region transcription start site region 56144
Gm45021 6 48589610 to 48613250 23640 + protein coding gene predicted gene 45021
Tssr56145 6 48589640 to 48589658 18 + TSS region transcription start site region 56145
Cpgi17371 6 48593521 to 48594747 1226 CpG island CpG island 17371
Repin1 6 48593883 to 48599082 5199 + protein coding gene replication initiator 1
Tssr56146 6 48593889 to 48593890 1 + TSS region transcription start site region 56146
Tssr56147 6 48593930 to 48593952 22 + TSS region transcription start site region 56147
Gm44965 6 48593941 to 48619278 25337 + protein coding gene predicted gene 44965
Tssr56148 6 48594204 to 48594222 18 + TSS region transcription start site region 56148
Cpgi17372 6 48596395 to 48597892 1497 CpG island CpG island 17372
Tssr56149 6 48598683 to 48598688 5 + TSS region transcription start site region 56149
Cpgi17373 6 48601595 to 48602620 1025 CpG island CpG island 17373
Tssr56150 6 48602001 to 48602043 42 + TSS region transcription start site region 56150
Zfp775 6 48602063 to 48623227 21164 + protein coding gene zinc finger protein 775
Gm38804 6 48611273 to 48619218 7945 - antisense lncRNA gene predicted gene, 38804
Tssr60741 6 48613738 to 48613741 3 - TSS region transcription start site region 60741
Tssr60742 6 48613749 to 48613782 33 - TSS region transcription start site region 60742
Cpgi17374 6 48619566 to 48620850 1284 CpG island CpG island 17374
Cpgi17375 6 48626845 to 48627592 747 CpG island CpG island 17375
AI854703 6 48628167 to 48633688 5521 + protein coding gene expressed sequence AI854703
Cpgi17376 6 48628980 to 48630243 1263 CpG island CpG island 17376
D6Mit314 6 48635729 to 48635928 199 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 314
Tssr56151 6 48647208 to 48647219 11 + TSS region transcription start site region 56151
Tssr56152 6 48647224 to 48647298 74 + TSS region transcription start site region 56152
Gimap8 6 48647234 to 48660875 13641 + protein coding gene GTPase, IMAP family member 8
Tssr56153 6 48647309 to 48647318 9 + TSS region transcription start site region 56153
Tssr56154 6 48647322 to 48647327 5 + TSS region transcription start site region 56154
Tssr56155 6 48647388 to 48647404 16 + TSS region transcription start site region 56155
Tssr56156 6 48647412 to 48647423 11 + TSS region transcription start site region 56156
Tssr56157 6 48647424 to 48647437 13 + TSS region transcription start site region 56157
Tssr60743 6 48648085 to 48648090 5 - TSS region transcription start site region 60743
Tssr56158 6 48651772 to 48651775 3 + TSS region transcription start site region 56158
Tssr56159 6 48659456 to 48659466 10 + TSS region transcription start site region 56159
Gm44262 6 48665403 to 48665860 457 - pseudogene predicted gene, 44262
Tssr56160 6 48674799 to 48674833 34 + TSS region transcription start site region 56160
Tssr56161 6 48675201 to 48675209 8 + TSS region transcription start site region 56161
Gm46958 6 48675832 to 48676936 1104 - lncRNA gene predicted gene, 46958
Tssr56162 6 48676114 to 48676155 41 + TSS region transcription start site region 56162
Gimap9 6 48676129 to 48679114 2985 + protein coding gene GTPase, IMAP family member 9
Tssr56163 6 48676160 to 48676190 30 + TSS region transcription start site region 56163
Tssr56164 6 48676193 to 48676209 16 + TSS region transcription start site region 56164
Tssr56165 6 48676408 to 48676422 14 + TSS region transcription start site region 56165
Tssr56166 6 48677673 to 48677689 16 + TSS region transcription start site region 56166
Tssr60744 6 48680570 to 48680581 11 - TSS region transcription start site region 60744
Tssr56167 6 48680628 to 48680631 3 + TSS region transcription start site region 56167
Tssr60745 6 48681730 to 48681737 7 - TSS region transcription start site region 60745
Tssr60746 6 48681805 to 48681817 12 - TSS region transcription start site region 60746
Tssr56168 6 48681987 to 48681996 9 + TSS region transcription start site region 56168
Tssr60747 6 48682349 to 48682395 46 - TSS region transcription start site region 60747
Tssr56169 6 48682508 to 48682537 29 + TSS region transcription start site region 56169
Tssr60748 6 48684454 to 48684469 15 - TSS region transcription start site region 60748
Tssr56170 6 48684544 to 48684556 12 + TSS region transcription start site region 56170
Tssr56171 6 48684570 to 48684586 16 + TSS region transcription start site region 56171
Gimap4 6 48684578 to 48692062 7484 + protein coding gene GTPase, IMAP family member 4
Tssr56172 6 48684589 to 48684598 9 + TSS region transcription start site region 56172
Tssr56173 6 48685141 to 48685186 45 + TSS region transcription start site region 56173
Tssr56174 6 48685502 to 48685513 11 + TSS region transcription start site region 56174
Tssr56175 6 48685940 to 48685976 36 + TSS region transcription start site region 56175
Tssr56176 6 48686589 to 48686607 18 + TSS region transcription start site region 56176
Tssr60749 6 48687535 to 48687570 35 - TSS region transcription start site region 60749
Tssr56177 6 48687680 to 48687693 13 + TSS region transcription start site region 56177
Tssr60750 6 48689350 to 48689354 4 - TSS region transcription start site region 60750
Tssr56178 6 48690646 to 48690658 12 + TSS region transcription start site region 56178
Tssr56179 6 48690679 to 48690691 12 + TSS region transcription start site region 56179
Tssr56180 6 48691058 to 48691069 11 + TSS region transcription start site region 56180
Tssr56181 6 48691354 to 48691382 28 + TSS region transcription start site region 56181
Tssr1831 6 48699167 to 48699182 15 + TSS region transcription start site region 1831
Tssr56182 6 48700529 to 48700540 11 + TSS region transcription start site region 56182
Gimap6 6 48701582 to 48708225 6643 - protein coding gene GTPase, IMAP family member 6
Tssr60751 6 48701958 to 48701963 5 - TSS region transcription start site region 60751
Tssr56183 6 48706292 to 48706314 22 + TSS region transcription start site region 56183
Tssr56184 6 48706533 to 48706549 16 + TSS region transcription start site region 56184
Tssr60752 6 48707618 to 48707634 16 - TSS region transcription start site region 60752
Tssr56185 6 48707939 to 48707987 48 + TSS region transcription start site region 56185
Tssr60753 6 48708129 to 48708159 30 - TSS region transcription start site region 60753
Tssr60754 6 48708174 to 48708203 29 - TSS region transcription start site region 60754
Tssr60755 6 48708206 to 48708252 46 - TSS region transcription start site region 60755
Tssr60756 6 48708263 to 48708274 11 - TSS region transcription start site region 60756
Tssr56186 6 48708306 to 48708332 26 + TSS region transcription start site region 56186
Tssr56187 6 48708340 to 48708351 11 + TSS region transcription start site region 56187
Tssr56188 6 48708358 to 48708368 10 + TSS region transcription start site region 56188
Tssr60757 6 48708864 to 48708898 34 - TSS region transcription start site region 60757
Tssr56189 6 48718602 to 48718613 11 + TSS region transcription start site region 56189
Gm28053 6 48718607 to 48752644 34037 + protein coding gene predicted gene, 28053
Gimap7 6 48718621 to 48724636 6015 + protein coding gene GTPase, IMAP family member 7
Tssr56190 6 48718625 to 48718633 8 + TSS region transcription start site region 56190
Tssr56191 6 48718637 to 48718664 27 + TSS region transcription start site region 56191
Tssr60758 6 48718673 to 48718679 6 - TSS region transcription start site region 60758
Tssr56192 6 48718757 to 48718765 8 + TSS region transcription start site region 56192
Tssr56193 6 48718768 to 48718779 11 + TSS region transcription start site region 56193
Tssr56194 6 48720438 to 48720445 7 + TSS region transcription start site region 56194
Tssr56195 6 48720474 to 48720481 7 + TSS region transcription start site region 56195
Tssr60759 6 48723622 to 48723660 38 - TSS region transcription start site region 60759
Tssr60760 6 48725561 to 48725603 42 - TSS region transcription start site region 60760
Tssr56196 6 48725781 to 48725793 12 + TSS region transcription start site region 56196
Srilp 6 48726556 to 75447710 26721154 QTL sleep response to influenza, light phase
D6Mit74 6 48726556 to 48726705 149 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 74
Obrq4 6 48726565 to 48726677 112 QTL obesity resistance QTL 4
D6Mit274 6 48726565 to 48726677 112 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 274
Tssr56197 6 48728079 to 48728086 7 + TSS region transcription start site region 56197
Tssr56198 6 48728141 to 48728157 16 + TSS region transcription start site region 56198
Tssr56199 6 48728163 to 48728174 11 + TSS region transcription start site region 56199
Tssr56200 6 48728184 to 48728192 8 + TSS region transcription start site region 56200
A130009E19Rik 6 48729549 to 48733665 4116 unclassified gene RIKEN cDNA A130009E19 gene
Tssr60761 6 48732669 to 48732683 14 - TSS region transcription start site region 60761
Tssr60762 6 48737022 to 48737065 43 - TSS region transcription start site region 60762
Tssr60763 6 48737111 to 48737123 12 - TSS region transcription start site region 60763
Tssr56201 6 48737332 to 48737340 8 + TSS region transcription start site region 56201
Tssr56202 6 48737364 to 48737394 30 + TSS region transcription start site region 56202
Tssr60764 6 48737900 to 48737931 31 - TSS region transcription start site region 60764
Gimap1os 6 48738346 to 48741444 3098 - unclassified non-coding RNA gene GTPase, IMAP family member 1, opposite strand
Tssr60765 6 48738883 to 48738899 16 - TSS region transcription start site region 60765
Tssr60766 6 48738905 to 48738913 8 - TSS region transcription start site region 60766
Tssr60767 6 48738917 to 48738932 15 - TSS region transcription start site region 60767
Tssr60768 6 48738952 to 48738966 14 - TSS region transcription start site region 60768
Tssr56203 6 48739006 to 48739019 13 + TSS region transcription start site region 56203
Tssr56204 6 48739039 to 48739096 57 + TSS region transcription start site region 56204
Gimap1 6 48739054 to 48743795 4741 + protein coding gene GTPase, IMAP family member 1
Tssr60769 6 48739187 to 48739204 17 - TSS region transcription start site region 60769
Tssr60770 6 48739207 to 48739221 14 - TSS region transcription start site region 60770
Tssr60771 6 48739244 to 48739255 11 - TSS region transcription start site region 60771
Tssr60772 6 48739459 to 48739463 4 - TSS region transcription start site region 60772
Tssr56205 6 48739868 to 48739877 9 + TSS region transcription start site region 56205
Tssr56206 6 48740012 to 48740024 12 + TSS region transcription start site region 56206
Tssr60773 6 48740613 to 48740632 19 - TSS region transcription start site region 60773
Tssr60774 6 48740764 to 48740774 10 - TSS region transcription start site region 60774
Tssr60775 6 48741328 to 48741344 16 - TSS region transcription start site region 60775
Tssr60776 6 48741434 to 48741449 15 - TSS region transcription start site region 60776
Tssr60777 6 48741462 to 48741473 11 - TSS region transcription start site region 60777
Tssr60778 6 48742010 to 48742030 20 - TSS region transcription start site region 60778
Cpgi17377 6 48742563 to 48743289 726 CpG island CpG island 17377
Tssr60779 6 48746094 to 48746104 10 - TSS region transcription start site region 60779
Tssr56207 6 48746169 to 48746180 11 + TSS region transcription start site region 56207
Tssr56208 6 48746188 to 48746212 24 + TSS region transcription start site region 56208
Gimap5 6 48746197 to 48754210 8013 + protein coding gene GTPase, IMAP family member 5
Tssr56209 6 48746223 to 48746234 11 + TSS region transcription start site region 56209
Tssr56210 6 48746237 to 48746302 65 + TSS region transcription start site region 56210
Tssr56211 6 48746707 to 48746718 11 + TSS region transcription start site region 56211
Tssr60780 6 48747501 to 48747519 18 - TSS region transcription start site region 60780
Tssr60781 6 48747535 to 48747547 12 - TSS region transcription start site region 60781
Tssr1832 6 48747663 to 48747679 16 - TSS region transcription start site region 1832
Tssr60782 6 48747741 to 48747755 14 - TSS region transcription start site region 60782
Tssr56212 6 48747924 to 48747957 33 + TSS region transcription start site region 56212
Gm44226 6 48754230 to 48755986 1756 - lincRNA gene predicted gene, 44226
4833403J16Rik 6 48755338 to 48756368 1030 + lincRNA gene RIKEN cDNA 4833403J16 gene
Gimap3 6 48764464 to 48770851 6387 - protein coding gene GTPase, IMAP family member 3
Tssr56213 6 48768749 to 48768769 20 + TSS region transcription start site region 56213
Tssr60783 6 48770735 to 48770741 6 - TSS region transcription start site region 60783
Tssr60784 6 48770744 to 48770762 18 - TSS region transcription start site region 60784
Tssr60785 6 48770773 to 48770791 18 - TSS region transcription start site region 60785
Tssr60786 6 48770806 to 48770822 16 - TSS region transcription start site region 60786
Tssr60787 6 48770823 to 48770830 7 - TSS region transcription start site region 60787
Tssr60788 6 48770833 to 48770884 51 - TSS region transcription start site region 60788
Tssr60789 6 48770886 to 48770892 6 - TSS region transcription start site region 60789
Tssr56214 6 48770982 to 48771010 28 + TSS region transcription start site region 56214
Tssr56215 6 48771039 to 48771065 26 + TSS region transcription start site region 56215
Gm30714 6 48790997 to 48793777 2780 - lncRNA gene predicted gene, 30714
Gm30781 6 48798280 to 48798826 546 - lincRNA gene predicted gene, 30781
Gm17834 6 48819024 to 48819602 578 + pseudogene predicted gene, 17834
Tmem176b 6 48833818 to 48841496 7678 - protein coding gene transmembrane protein 176B
Tssr56216 6 48833824 to 48833840 16 + TSS region transcription start site region 56216
Tssr60790 6 48833924 to 48833933 9 - TSS region transcription start site region 60790
Tssr60791 6 48833965 to 48833995 30 - TSS region transcription start site region 60791