Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:48413698-48543711

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32 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Krba1 6 48395586 to 48419781 24195 + protein coding gene KRAB-A domain containing 1
Gm24325 6 48420769 to 48420842 73 + miRNA gene predicted gene, 24325
Gm38803 6 48422358 to 48427562 5204 + lncRNA gene predicted gene, 38803
Zfp467 6 48427697 to 48445825 18128 - protein coding gene zinc finger protein 467
Cpgi17366 6 48437961 to 48439469 1508 CpG island CpG island 17366
Tssr60726 6 48439612 to 48439624 12 - TSS region transcription start site region 60726
Cpgi17367 6 48444861 to 48446092 1231 CpG island CpG island 17367
Tssr60727 6 48445427 to 48445505 78 - TSS region transcription start site region 60727
Tssr60728 6 48445513 to 48445534 21 - TSS region transcription start site region 60728
Tssr60729 6 48445678 to 48445689 11 - TSS region transcription start site region 60729
Tssr60730 6 48445730 to 48445741 11 - TSS region transcription start site region 60730
Tssr60731 6 48445744 to 48445821 77 - TSS region transcription start site region 60731
Tssr60732 6 48445826 to 48445847 21 - TSS region transcription start site region 60732
Tssr56127 6 48448100 to 48448122 22 + TSS region transcription start site region 56127
Sspo 6 48448229 to 48501250 53021 + protein coding gene SCO-spondin
Tssr60733 6 48448665 to 48448685 20 - TSS region transcription start site region 60733
Tssr56128 6 48467828 to 48467838 10 + TSS region transcription start site region 56128
Tssr56129 6 48478698 to 48478711 13 + TSS region transcription start site region 56129
Cpgi17368 6 48504182 to 48504595 413 CpG island CpG island 17368
Tssr56130 6 48504330 to 48504406 76 + TSS region transcription start site region 56130
Zfp862-ps 6 48504339 to 48534832 30493 + pseudogene zinc finger protein 862, pseudogene
Tssr56131 6 48508334 to 48508354 20 + TSS region transcription start site region 56131
Tssr56132 6 48523446 to 48523455 9 + TSS region transcription start site region 56132
Gm10243 6 48523518 to 48523850 332 + pseudogene predicted gene 10243
Gm7887 6 48524554 to 48525090 536 - pseudogene predicted gene 7887
1700026J14Rik 6 48536582 to 48537474 892 - lincRNA gene RIKEN cDNA 1700026J14 gene
Cpgi17369 6 48537440 to 48537975 535 CpG island CpG island 17369
Tssr56133 6 48537560 to 48537622 62 + TSS region transcription start site region 56133
Atp6v0e2 6 48537615 to 48541801 4186 + protein coding gene ATPase, H+ transporting, lysosomal V0 subunit E2
Tssr56134 6 48537631 to 48537733 102 + TSS region transcription start site region 56134
Tssr56135 6 48537755 to 48537768 13 + TSS region transcription start site region 56135
Tssr56136 6 48540488 to 48540500 12 + TSS region transcription start site region 56136