Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:48354339-48684832

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122 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
n-TCgca46 6 48355855 to 48355926 71 + tRNA gene nuclear encoded tRNA cysteine 46 (anticodon GCA)
n-TCgca11 6 48356851 to 48356922 71 + tRNA gene nuclear encoded tRNA cysteine 11 (anticodon GCA)
n-TCgca19 6 48363532 to 48363603 71 - tRNA gene nuclear encoded tRNA cysteine 19 (anticodon GCA)
Gm44696 6 48374136 to 48395408 21272 - lincRNA gene predicted gene 44696
Gm7880 6 48381190 to 48382060 870 - pseudogene predicted gene 7880
Cpgi17365 6 48395256 to 48396116 860 CpG island CpG island 17365
Krba1 6 48395586 to 48419781 24195 + protein coding gene KRAB-A domain containing 1
Tssr56118 6 48395604 to 48395646 42 + TSS region transcription start site region 56118
Tssr56119 6 48395652 to 48395688 36 + TSS region transcription start site region 56119
Tssr56120 6 48395691 to 48395713 22 + TSS region transcription start site region 56120
Tssr56121 6 48395817 to 48395828 11 + TSS region transcription start site region 56121
Tssr56122 6 48395837 to 48395872 35 + TSS region transcription start site region 56122
4930447G04Rik 6 48396178 to 48396723 545 unclassified gene RIKEN cDNA 4930447G04 gene
Tssr60725 6 48396741 to 48396767 26 - TSS region transcription start site region 60725
Tssr56123 6 48411587 to 48411599 12 + TSS region transcription start site region 56123
Tssr56124 6 48411613 to 48411624 11 + TSS region transcription start site region 56124
Tssr56125 6 48412156 to 48412170 14 + TSS region transcription start site region 56125
Tssr56126 6 48413022 to 48413034 12 + TSS region transcription start site region 56126
Gm24325 6 48420769 to 48420842 73 + miRNA gene predicted gene, 24325
Gm38803 6 48422358 to 48427562 5204 + lncRNA gene predicted gene, 38803
Zfp467 6 48427697 to 48445825 18128 - protein coding gene zinc finger protein 467
Cpgi17366 6 48437961 to 48439469 1508 CpG island CpG island 17366
Tssr60726 6 48439612 to 48439624 12 - TSS region transcription start site region 60726
Cpgi17367 6 48444861 to 48446092 1231 CpG island CpG island 17367
Tssr60727 6 48445427 to 48445505 78 - TSS region transcription start site region 60727
Tssr60728 6 48445513 to 48445534 21 - TSS region transcription start site region 60728
Tssr60729 6 48445678 to 48445689 11 - TSS region transcription start site region 60729
Tssr60730 6 48445730 to 48445741 11 - TSS region transcription start site region 60730
Tssr60731 6 48445744 to 48445821 77 - TSS region transcription start site region 60731
Tssr60732 6 48445826 to 48445847 21 - TSS region transcription start site region 60732
Tssr56127 6 48448100 to 48448122 22 + TSS region transcription start site region 56127
Sspo 6 48448229 to 48501250 53021 + protein coding gene SCO-spondin
Tssr60733 6 48448665 to 48448685 20 - TSS region transcription start site region 60733
Tssr56128 6 48467828 to 48467838 10 + TSS region transcription start site region 56128
Tssr56129 6 48478698 to 48478711 13 + TSS region transcription start site region 56129
Cpgi17368 6 48504182 to 48504595 413 CpG island CpG island 17368
Tssr56130 6 48504330 to 48504406 76 + TSS region transcription start site region 56130
Zfp862-ps 6 48504339 to 48534832 30493 + pseudogene zinc finger protein 862, pseudogene
Tssr56131 6 48508334 to 48508354 20 + TSS region transcription start site region 56131
Tssr56132 6 48523446 to 48523455 9 + TSS region transcription start site region 56132
Gm10243 6 48523518 to 48523850 332 + pseudogene predicted gene 10243
Gm7887 6 48524554 to 48525090 536 - pseudogene predicted gene 7887
1700026J14Rik 6 48536582 to 48537474 892 - lincRNA gene RIKEN cDNA 1700026J14 gene
Cpgi17369 6 48537440 to 48537975 535 CpG island CpG island 17369
Tssr56133 6 48537560 to 48537622 62 + TSS region transcription start site region 56133
Atp6v0e2 6 48537615 to 48541801 4186 + protein coding gene ATPase, H+ transporting, lysosomal V0 subunit E2
Tssr56134 6 48537631 to 48537733 102 + TSS region transcription start site region 56134
Tssr56135 6 48537755 to 48537768 13 + TSS region transcription start site region 56135
Tssr56136 6 48540488 to 48540500 12 + TSS region transcription start site region 56136
Cpgi17370 6 48554457 to 48555013 556 CpG island CpG island 17370
Tssr60734 6 48554657 to 48554666 9 - TSS region transcription start site region 60734
Tssr60735 6 48554674 to 48554687 13 - TSS region transcription start site region 60735
Tssr60736 6 48554717 to 48554731 14 - TSS region transcription start site region 60736
Tssr56137 6 48554776 to 48554845 69 + TSS region transcription start site region 56137
Lrrc61 6 48554796 to 48570722 15926 + protein coding gene leucine rich repeat containing 61
Tssr56138 6 48554930 to 48554962 32 + TSS region transcription start site region 56138
Rarres2 6 48569696 to 48572789 3093 - protein coding gene retinoic acid receptor responder (tazarotene induced) 2
Tssr60737 6 48572660 to 48572677 17 - TSS region transcription start site region 60737
Tssr60738 6 48572766 to 48572777 11 - TSS region transcription start site region 60738
Tssr60739 6 48572823 to 48572826 3 - TSS region transcription start site region 60739
Tssr60740 6 48588451 to 48588456 5 - TSS region transcription start site region 60740
Gm5111 6 48589445 to 48590584 1139 + protein coding gene predicted gene 5111
Tssr56139 6 48589450 to 48589468 18 + TSS region transcription start site region 56139
Tssr56140 6 48589484 to 48589499 15 + TSS region transcription start site region 56140
Tssr56141 6 48589506 to 48589528 22 + TSS region transcription start site region 56141
Tssr56142 6 48589546 to 48589555 9 + TSS region transcription start site region 56142
Tssr56143 6 48589560 to 48589580 20 + TSS region transcription start site region 56143
Tssr56144 6 48589606 to 48589636 30 + TSS region transcription start site region 56144
Gm45021 6 48589610 to 48613250 23640 + protein coding gene predicted gene 45021
Tssr56145 6 48589640 to 48589658 18 + TSS region transcription start site region 56145
Cpgi17371 6 48593521 to 48594747 1226 CpG island CpG island 17371
Repin1 6 48593883 to 48599082 5199 + protein coding gene replication initiator 1
Tssr56146 6 48593889 to 48593890 1 + TSS region transcription start site region 56146
Tssr56147 6 48593930 to 48593952 22 + TSS region transcription start site region 56147
Gm44965 6 48593941 to 48619278 25337 + protein coding gene predicted gene 44965
Tssr56148 6 48594204 to 48594222 18 + TSS region transcription start site region 56148
Cpgi17372 6 48596395 to 48597892 1497 CpG island CpG island 17372
Tssr56149 6 48598683 to 48598688 5 + TSS region transcription start site region 56149
Cpgi17373 6 48601595 to 48602620 1025 CpG island CpG island 17373
Tssr56150 6 48602001 to 48602043 42 + TSS region transcription start site region 56150
Zfp775 6 48602063 to 48623227 21164 + protein coding gene zinc finger protein 775
Gm38804 6 48611273 to 48619218 7945 - antisense lncRNA gene predicted gene, 38804
Tssr60741 6 48613738 to 48613741 3 - TSS region transcription start site region 60741
Tssr60742 6 48613749 to 48613782 33 - TSS region transcription start site region 60742
Cpgi17374 6 48619566 to 48620850 1284 CpG island CpG island 17374
Cpgi17375 6 48626845 to 48627592 747 CpG island CpG island 17375
AI854703 6 48628167 to 48633688 5521 + protein coding gene expressed sequence AI854703
Cpgi17376 6 48628980 to 48630243 1263 CpG island CpG island 17376
D6Mit314 6 48635729 to 48635928 199 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 314
Tssr56151 6 48647208 to 48647219 11 + TSS region transcription start site region 56151
Tssr56152 6 48647224 to 48647298 74 + TSS region transcription start site region 56152
Gimap8 6 48647234 to 48660875 13641 + protein coding gene GTPase, IMAP family member 8
Tssr56153 6 48647309 to 48647318 9 + TSS region transcription start site region 56153
Tssr56154 6 48647322 to 48647327 5 + TSS region transcription start site region 56154
Tssr56155 6 48647388 to 48647404 16 + TSS region transcription start site region 56155
Tssr56156 6 48647412 to 48647423 11 + TSS region transcription start site region 56156
Tssr56157 6 48647424 to 48647437 13 + TSS region transcription start site region 56157
Tssr60743 6 48648085 to 48648090 5 - TSS region transcription start site region 60743
Tssr56158 6 48651772 to 48651775 3 + TSS region transcription start site region 56158
Tssr56159 6 48659456 to 48659466 10 + TSS region transcription start site region 56159
Gm44262 6 48665403 to 48665860 457 - pseudogene predicted gene, 44262
Tssr56160 6 48674799 to 48674833 34 + TSS region transcription start site region 56160
Tssr56161 6 48675201 to 48675209 8 + TSS region transcription start site region 56161
Gm46958 6 48675832 to 48676936 1104 - lncRNA gene predicted gene, 46958
Tssr56162 6 48676114 to 48676155 41 + TSS region transcription start site region 56162
Gimap9 6 48676129 to 48679114 2985 + protein coding gene GTPase, IMAP family member 9
Tssr56163 6 48676160 to 48676190 30 + TSS region transcription start site region 56163
Tssr56164 6 48676193 to 48676209 16 + TSS region transcription start site region 56164
Tssr56165 6 48676408 to 48676422 14 + TSS region transcription start site region 56165
Tssr56166 6 48677673 to 48677689 16 + TSS region transcription start site region 56166
Tssr60744 6 48680570 to 48680581 11 - TSS region transcription start site region 60744
Tssr56167 6 48680628 to 48680631 3 + TSS region transcription start site region 56167
Tssr60745 6 48681730 to 48681737 7 - TSS region transcription start site region 60745
Tssr60746 6 48681805 to 48681817 12 - TSS region transcription start site region 60746
Tssr56168 6 48681987 to 48681996 9 + TSS region transcription start site region 56168
Tssr60747 6 48682349 to 48682395 46 - TSS region transcription start site region 60747
Tssr56169 6 48682508 to 48682537 29 + TSS region transcription start site region 56169
Tssr60748 6 48684454 to 48684469 15 - TSS region transcription start site region 60748
Tssr56170 6 48684544 to 48684556 12 + TSS region transcription start site region 56170
Tssr56171 6 48684570 to 48684586 16 + TSS region transcription start site region 56171
Gimap4 6 48684578 to 48692062 7484 + protein coding gene GTPase, IMAP family member 4
Tssr56172 6 48684589 to 48684598 9 + TSS region transcription start site region 56172