Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:48067451-48347522

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54 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Zfp746 6 48062395 to 48086593 24198 - protein coding gene zinc finger protein 746
Tssr56116 6 48073632 to 48073645 13 + TSS region transcription start site region 56116
Cpgi17364 6 48085398 to 48086957 1559 CpG island CpG island 17364
Tssr60724 6 48086530 to 48086658 128 - TSS region transcription start site region 60724
Gm30435 6 48130473 to 48146077 15604 + lncRNA gene predicted gene, 30435
Gm16630 6 48130906 to 48159280 28374 - lincRNA gene predicted gene, 16630
n-TCgca37 6 48133937 to 48134008 71 + tRNA gene nuclear encoded tRNA cysteine 37 (anticodon GCA)
n-TCgca10 6 48139510 to 48139581 71 - tRNA gene nuclear encoded tRNA cysteine 10 (anticodon GCA)
n-TCgca4 6 48140484 to 48140555 71 - tRNA gene nuclear encoded tRNA cysteine 4 (anticodon GCA)
n-TCgca13 6 48143356 to 48143427 71 + tRNA gene nuclear encoded tRNA cysteine 13 (anticodon GCA)
n-TCgca36 6 48144928 to 48144999 71 - tRNA gene nuclear encoded tRNA cysteine 36 (anticodon GCA)
n-TCgca38 6 48154714 to 48154785 71 + tRNA gene nuclear encoded tRNA cysteine 38 (anticodon GCA)
n-TCgca35 6 48156275 to 48156346 71 - tRNA gene nuclear encoded tRNA cysteine 35 (anticodon GCA)
n-TCgca39 6 48160179 to 48160250 71 + tRNA gene nuclear encoded tRNA cysteine 39 (anticodon GCA)
n-TCgca40 6 48164101 to 48164172 71 + tRNA gene nuclear encoded tRNA cysteine 40 (anticodon GCA)
D6Mit43 6 48164233 to 48164439 206 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 43
n-TCgca8 6 48186318 to 48186389 71 + tRNA gene nuclear encoded tRNA cysteine 8 (anticodon GCA)
n-TCgca41 6 48197026 to 48197097 71 + tRNA gene nuclear encoded tRNA cysteine 41 (anticodon GCA)
n-TCgca1 6 48205068 to 48205139 71 + tRNA gene nuclear encoded tRNA cysteine 1 (anticodon GCA)
n-TCgca34 6 48207451 to 48207522 71 - tRNA gene nuclear encoded tRNA cysteine 34 (anticodon GCA)
n-TCgca49 6 48209838 to 48209909 71 - tRNA gene nuclear encoded tRNA cysteine 49 (anticodon GCA)
Gm38802 6 48222182 to 48247389 25207 + lncRNA gene predicted gene, 38802
n-TCgca33 6 48223094 to 48223165 71 - tRNA gene nuclear encoded tRNA cysteine 33 (anticodon GCA)
n-TCgca48 6 48224329 to 48224400 71 - tRNA gene nuclear encoded tRNA cysteine 48 (anticodon GCA)
n-TCgca32 6 48244316 to 48244387 71 - tRNA gene nuclear encoded tRNA cysteine 32 (anticodon GCA)
n-TCgca31 6 48252103 to 48252174 71 - tRNA gene nuclear encoded tRNA cysteine 31 (anticodon GCA)
n-TCgca15 6 48253080 to 48253151 71 - tRNA gene nuclear encoded tRNA cysteine 15 (anticodon GCA)
n-TCgca30 6 48261722 to 48261793 71 - tRNA gene nuclear encoded tRNA cysteine 30 (anticodon GCA)
n-TCgca29 6 48268458 to 48268529 71 - tRNA gene nuclear encoded tRNA cysteine 29 (anticodon GCA)
n-TCgca42 6 48271926 to 48271997 71 + tRNA gene nuclear encoded tRNA cysteine 42 (anticodon GCA)
n-TCgca43 6 48273680 to 48273751 71 + tRNA gene nuclear encoded tRNA cysteine 43 (anticodon GCA)
Gm30362 6 48275245 to 48338162 62917 + lncRNA gene predicted gene, 30362
n-TCgca3 6 48278792 to 48278863 71 - tRNA gene nuclear encoded tRNA cysteine 3 (anticodon GCA)
n-TCgca28 6 48279771 to 48279842 71 - tRNA gene nuclear encoded tRNA cysteine 28 (anticodon GCA)
n-TCgca12 6 48288876 to 48288947 71 - tRNA gene nuclear encoded tRNA cysteine 12 (anticodon GCA)
Tssr56117 6 48289216 to 48289227 11 + TSS region transcription start site region 56117
Gm22122 6 48289228 to 48289427 199 + snRNA gene predicted gene, 22122
n-TCgca50 6 48293007 to 48293078 71 - tRNA gene nuclear encoded tRNA cysteine 50 (anticodon GCA)
n-Tcgca44 6 48297433 to 48297504 71 + tRNA gene nuclear encoded tRNA cysteine 44 (anticodon GCA)
n-TCgca27 6 48298950 to 48299021 71 - tRNA gene nuclear encoded tRNA cysteine 27 (anticodon GCA)
n-TCgca6 6 48302459 to 48302530 71 + tRNA gene nuclear encoded tRNA cysteine 6 (anticodon GCA)
n-TCgca17 6 48303465 to 48303536 71 + tRNA gene nuclear encoded tRNA cysteine 17 (anticodon GCA)
n-TCgca7 6 48305464 to 48305535 71 - tRNA gene nuclear encoded tRNA cysteine 7 (anticodon GCA)
n-TCgca16 6 48308729 to 48308800 71 - tRNA gene nuclear encoded tRNA cysteine 16 (anticodon GCA)
n-TCgca26 6 48309707 to 48309778 71 - tRNA gene nuclear encoded tRNA cysteine 26 (anticodon GCA)
n-TCgca9 6 48311499 to 48311570 71 + tRNA gene nuclear encoded tRNA cysteine 9 (anticodon GCA)
n-TCgca25 6 48313018 to 48313089 71 - tRNA gene nuclear encoded tRNA cysteine 25 (anticodon GCA)
n-TCgca2 6 48316537 to 48316606 69 + tRNA gene nuclear encoded tRNA cysteine 2 (anticodon GCA)
n-TCgca45 6 48317515 to 48317586 71 + tRNA gene nuclear encoded tRNA cysteine 45 (anticodon GCA)
n-TCgca24 6 48332840 to 48332911 71 - tRNA gene nuclear encoded tRNA cysteine 24 (anticodon GCA)
n-TCgca23 6 48336108 to 48336179 71 - tRNA gene nuclear encoded tRNA cysteine 23 (anticodon GCA)
n-TCgca22 6 48337091 to 48337162 71 - tRNA gene nuclear encoded tRNA cysteine 22 (anticodon GCA)
n-TCgca14 6 48340613 to 48340684 71 + tRNA gene nuclear encoded tRNA cysteine 14 (anticodon GCA)
n-TCgca5 6 48341588 to 48341659 71 + tRNA gene nuclear encoded tRNA cysteine 5 (anticodon GCA)