Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:47938632-48208645

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42 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi17358 6 47942690 to 47943725 1035 CpG island CpG island 17358
Tssr56112 6 47943141 to 47943215 74 + TSS region transcription start site region 56112
Zfp783 6 47943175 to 47954549 11374 + pseudogene zinc finger protein 783
Cpgi17359 6 47953141 to 47953825 684 CpG island CpG island 17359
Zfp956 6 47953390 to 47965300 11910 + protein coding gene zinc finger protein 956
Tssr56113 6 47953390 to 47953451 61 + TSS region transcription start site region 56113
Tssr56114 6 47953458 to 47953468 10 + TSS region transcription start site region 56114
Gm6443 6 47977003 to 47977876 873 - pseudogene predicted gene 6443
n-TCgca57 6 47978997 to 47979068 71 + tRNA gene nuclear encoded tRNA cysteine 57 (anticodon GCA)
Cpgi17360 6 48016110 to 48016300 190 CpG island CpG island 17360
Zfp777 6 48024188 to 48048911 24723 - protein coding gene zinc finger protein 777
Cpgi17361 6 48024479 to 48025599 1120 CpG island CpG island 17361
Gm45738 6 48045548 to 48045955 407 - sense intronic lncRNA gene predicted gene 45738
Cpgi17362 6 48047214 to 48049214 2000 CpG island CpG island 17362
Tssr60720 6 48048499 to 48048528 29 - TSS region transcription start site region 60720
Gm24563 6 48048703 to 48048795 92 + miRNA gene predicted gene, 24563
Tssr60721 6 48048856 to 48048864 8 - TSS region transcription start site region 60721
Tssr60722 6 48048939 to 48048956 17 - TSS region transcription start site region 60722
Zfp746 6 48062395 to 48086593 24198 - protein coding gene zinc finger protein 746
Cpgi17363 6 48063818 to 48064489 671 CpG island CpG island 17363
Tssr60723 6 48064563 to 48064591 28 - TSS region transcription start site region 60723
Tssr56115 6 48065924 to 48065966 42 + TSS region transcription start site region 56115
Gt(pU21)138Imeg 6 48065950 to 48066049 99 unclassified gene gene trap 138, Institute of Molecular Embryology and Genetics
Tssr56116 6 48073632 to 48073645 13 + TSS region transcription start site region 56116
Cpgi17364 6 48085398 to 48086957 1559 CpG island CpG island 17364
Tssr60724 6 48086530 to 48086658 128 - TSS region transcription start site region 60724
Gm30435 6 48130473 to 48146077 15604 + lncRNA gene predicted gene, 30435
Gm16630 6 48130906 to 48159280 28374 - lincRNA gene predicted gene, 16630
n-TCgca37 6 48133937 to 48134008 71 + tRNA gene nuclear encoded tRNA cysteine 37 (anticodon GCA)
n-TCgca10 6 48139510 to 48139581 71 - tRNA gene nuclear encoded tRNA cysteine 10 (anticodon GCA)
n-TCgca4 6 48140484 to 48140555 71 - tRNA gene nuclear encoded tRNA cysteine 4 (anticodon GCA)
n-TCgca13 6 48143356 to 48143427 71 + tRNA gene nuclear encoded tRNA cysteine 13 (anticodon GCA)
n-TCgca36 6 48144928 to 48144999 71 - tRNA gene nuclear encoded tRNA cysteine 36 (anticodon GCA)
n-TCgca38 6 48154714 to 48154785 71 + tRNA gene nuclear encoded tRNA cysteine 38 (anticodon GCA)
n-TCgca35 6 48156275 to 48156346 71 - tRNA gene nuclear encoded tRNA cysteine 35 (anticodon GCA)
n-TCgca39 6 48160179 to 48160250 71 + tRNA gene nuclear encoded tRNA cysteine 39 (anticodon GCA)
n-TCgca40 6 48164101 to 48164172 71 + tRNA gene nuclear encoded tRNA cysteine 40 (anticodon GCA)
D6Mit43 6 48164233 to 48164439 206 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 43
n-TCgca8 6 48186318 to 48186389 71 + tRNA gene nuclear encoded tRNA cysteine 8 (anticodon GCA)
n-TCgca41 6 48197026 to 48197097 71 + tRNA gene nuclear encoded tRNA cysteine 41 (anticodon GCA)
n-TCgca1 6 48205068 to 48205139 71 + tRNA gene nuclear encoded tRNA cysteine 1 (anticodon GCA)
n-TCgca34 6 48207451 to 48207522 71 - tRNA gene nuclear encoded tRNA cysteine 34 (anticodon GCA)