Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:47710484-48570555

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189 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm40363 6 47682345 to 47738326 55981 + protein coding gene predicted gene, 40363
Cpgi17350 6 47740297 to 47740465 168 CpG island CpG island 17350
Gm36673 6 47762210 to 47773095 10885 + lncRNA gene predicted gene, 36673
Cpgi17351 6 47778200 to 47778748 548 CpG island CpG island 17351
Tssr60703 6 47778336 to 47778339 3 - TSS region transcription start site region 60703
Tssr60704 6 47780681 to 47780688 7 - TSS region transcription start site region 60704
Tssr56097 6 47781618 to 47781628 10 + TSS region transcription start site region 56097
Rny3 6 47781624 to 47781724 100 + scRNA gene RNA, Y3 small cytoplasmic (associated with Ro protein)
Tssr56098 6 47781639 to 47781678 39 + TSS region transcription start site region 56098
D6Mit315 6 47785022 to 47785116 94 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 315
Rpl31-ps7 6 47785996 to 47786374 378 - pseudogene ribosomal protein L31, pseudogene 7
Rny1 6 47788070 to 47788180 110 - scRNA gene RNA, Y1 small cytoplasmic, Ro-associated
Tssr60705 6 47788108 to 47788140 32 - TSS region transcription start site region 60705
Tssr60706 6 47788178 to 47788188 10 - TSS region transcription start site region 60706
Pdia4 6 47796141 to 47813430 17289 - protein coding gene protein disulfide isomerase associated 4
Tssr60707 6 47796243 to 47796247 4 - TSS region transcription start site region 60707
Tssr56099 6 47796824 to 47796870 46 + TSS region transcription start site region 56099
Tssr60708 6 47798430 to 47798444 14 - TSS region transcription start site region 60708
Tssr60709 6 47798548 to 47798573 25 - TSS region transcription start site region 60709
Tssr60710 6 47799222 to 47799236 14 - TSS region transcription start site region 60710
Tssr60711 6 47799239 to 47799269 30 - TSS region transcription start site region 60711
Tssr60712 6 47800993 to 47801015 22 - TSS region transcription start site region 60712
Mir704 6 47803576 to 47803652 76 - miRNA gene microRNA 704
Tssr60713 6 47803835 to 47803862 27 - TSS region transcription start site region 60713
Tssr60714 6 47807214 to 47807225 11 - TSS region transcription start site region 60714
Tssr60715 6 47807481 to 47807493 12 - TSS region transcription start site region 60715
Cpgi17352 6 47812987 to 47813782 795 CpG island CpG island 17352
Tssr60716 6 47813338 to 47813369 31 - TSS region transcription start site region 60716
Tssr60717 6 47813377 to 47813409 32 - TSS region transcription start site region 60717
Tssr60718 6 47813514 to 47813528 14 - TSS region transcription start site region 60718
Tssr56100 6 47813758 to 47813787 29 + TSS region transcription start site region 56100
Rpl35a-ps7 6 47815300 to 47815632 332 - pseudogene ribosomal protein L35A, pseudogene 7
Zfp786 6 47819266 to 47830867 11601 - protein coding gene zinc finger protein 786
Cpgi17353 6 47830086 to 47831027 941 CpG island CpG island 17353
Tssr60719 6 47830509 to 47830584 75 - TSS region transcription start site region 60719
Cpgi17354 6 47835444 to 47836525 1081 CpG island CpG island 17354
Tssr56101 6 47835650 to 47835725 75 + TSS region transcription start site region 56101
Zfp398 6 47835661 to 47873537 37876 + protein coding gene zinc finger protein 398
Tssr56102 6 47835728 to 47835739 11 + TSS region transcription start site region 56102
Tssr56103 6 47835749 to 47835777 28 + TSS region transcription start site region 56103
Tssr56104 6 47835786 to 47835797 11 + TSS region transcription start site region 56104
Tssr56105 6 47835798 to 47835824 26 + TSS region transcription start site region 56105
Gm44041 6 47847743 to 47848138 395 + pseudogene predicted gene, 44041
Tssr56106 6 47869982 to 47869985 3 + TSS region transcription start site region 56106
Zfp282 6 47877209 to 47908485 31276 + protein coding gene zinc finger protein 282
Cpgi17355 6 47877320 to 47878437 1117 CpG island CpG island 17355
Tssr56107 6 47877548 to 47877569 21 + TSS region transcription start site region 56107
Tssr56108 6 47877571 to 47877594 23 + TSS region transcription start site region 56108
Tssr56109 6 47877620 to 47877640 20 + TSS region transcription start site region 56109
Tssr56110 6 47877643 to 47877708 65 + TSS region transcription start site region 56110
Cpgi17356 6 47904501 to 47905558 1057 CpG island CpG island 17356
Cpgi17357 6 47920285 to 47921228 943 CpG island CpG island 17357
Zfp212 6 47920568 to 47932639 12071 + protein coding gene Zinc finger protein 212
Tssr56111 6 47920584 to 47920636 52 + TSS region transcription start site region 56111
Cpgi17358 6 47942690 to 47943725 1035 CpG island CpG island 17358
Tssr56112 6 47943141 to 47943215 74 + TSS region transcription start site region 56112
Zfp783 6 47943175 to 47954549 11374 + pseudogene zinc finger protein 783
Cpgi17359 6 47953141 to 47953825 684 CpG island CpG island 17359
Tssr56113 6 47953390 to 47953451 61 + TSS region transcription start site region 56113
Zfp956 6 47953390 to 47965300 11910 + protein coding gene zinc finger protein 956
Tssr56114 6 47953458 to 47953468 10 + TSS region transcription start site region 56114
Gm6443 6 47977003 to 47977876 873 - pseudogene predicted gene 6443
n-TCgca57 6 47978997 to 47979068 71 + tRNA gene nuclear encoded tRNA cysteine 57 (anticodon GCA)
Cpgi17360 6 48016110 to 48016300 190 CpG island CpG island 17360
Zfp777 6 48024188 to 48048911 24723 - protein coding gene zinc finger protein 777
Cpgi17361 6 48024479 to 48025599 1120 CpG island CpG island 17361
Gm45738 6 48045548 to 48045955 407 - sense intronic lncRNA gene predicted gene 45738
Cpgi17362 6 48047214 to 48049214 2000 CpG island CpG island 17362
Tssr60720 6 48048499 to 48048528 29 - TSS region transcription start site region 60720
Gm24563 6 48048703 to 48048795 92 + miRNA gene predicted gene, 24563
Tssr60721 6 48048856 to 48048864 8 - TSS region transcription start site region 60721
Tssr60722 6 48048939 to 48048956 17 - TSS region transcription start site region 60722
Zfp746 6 48062395 to 48086593 24198 - protein coding gene zinc finger protein 746
Cpgi17363 6 48063818 to 48064489 671 CpG island CpG island 17363
Tssr60723 6 48064563 to 48064591 28 - TSS region transcription start site region 60723
Tssr56115 6 48065924 to 48065966 42 + TSS region transcription start site region 56115
Gt(pU21)138Imeg 6 48065950 to 48066049 99 unclassified gene gene trap 138, Institute of Molecular Embryology and Genetics
Tssr56116 6 48073632 to 48073645 13 + TSS region transcription start site region 56116
Cpgi17364 6 48085398 to 48086957 1559 CpG island CpG island 17364
Tssr60724 6 48086530 to 48086658 128 - TSS region transcription start site region 60724
Gm30435 6 48130473 to 48146077 15604 + lncRNA gene predicted gene, 30435
Gm16630 6 48130906 to 48159280 28374 - lincRNA gene predicted gene, 16630
n-TCgca37 6 48133937 to 48134008 71 + tRNA gene nuclear encoded tRNA cysteine 37 (anticodon GCA)
n-TCgca10 6 48139510 to 48139581 71 - tRNA gene nuclear encoded tRNA cysteine 10 (anticodon GCA)
n-TCgca4 6 48140484 to 48140555 71 - tRNA gene nuclear encoded tRNA cysteine 4 (anticodon GCA)
n-TCgca13 6 48143356 to 48143427 71 + tRNA gene nuclear encoded tRNA cysteine 13 (anticodon GCA)
n-TCgca36 6 48144928 to 48144999 71 - tRNA gene nuclear encoded tRNA cysteine 36 (anticodon GCA)
n-TCgca38 6 48154714 to 48154785 71 + tRNA gene nuclear encoded tRNA cysteine 38 (anticodon GCA)
n-TCgca35 6 48156275 to 48156346 71 - tRNA gene nuclear encoded tRNA cysteine 35 (anticodon GCA)
n-TCgca39 6 48160179 to 48160250 71 + tRNA gene nuclear encoded tRNA cysteine 39 (anticodon GCA)
n-TCgca40 6 48164101 to 48164172 71 + tRNA gene nuclear encoded tRNA cysteine 40 (anticodon GCA)
D6Mit43 6 48164233 to 48164439 206 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 43
n-TCgca8 6 48186318 to 48186389 71 + tRNA gene nuclear encoded tRNA cysteine 8 (anticodon GCA)
n-TCgca41 6 48197026 to 48197097 71 + tRNA gene nuclear encoded tRNA cysteine 41 (anticodon GCA)
n-TCgca1 6 48205068 to 48205139 71 + tRNA gene nuclear encoded tRNA cysteine 1 (anticodon GCA)
n-TCgca34 6 48207451 to 48207522 71 - tRNA gene nuclear encoded tRNA cysteine 34 (anticodon GCA)
n-TCgca49 6 48209838 to 48209909 71 - tRNA gene nuclear encoded tRNA cysteine 49 (anticodon GCA)
Gm38802 6 48222182 to 48247389 25207 + lncRNA gene predicted gene, 38802
n-TCgca33 6 48223094 to 48223165 71 - tRNA gene nuclear encoded tRNA cysteine 33 (anticodon GCA)
n-TCgca48 6 48224329 to 48224400 71 - tRNA gene nuclear encoded tRNA cysteine 48 (anticodon GCA)
n-TCgca32 6 48244316 to 48244387 71 - tRNA gene nuclear encoded tRNA cysteine 32 (anticodon GCA)
n-TCgca31 6 48252103 to 48252174 71 - tRNA gene nuclear encoded tRNA cysteine 31 (anticodon GCA)
n-TCgca15 6 48253080 to 48253151 71 - tRNA gene nuclear encoded tRNA cysteine 15 (anticodon GCA)
n-TCgca30 6 48261722 to 48261793 71 - tRNA gene nuclear encoded tRNA cysteine 30 (anticodon GCA)
n-TCgca29 6 48268458 to 48268529 71 - tRNA gene nuclear encoded tRNA cysteine 29 (anticodon GCA)
n-TCgca42 6 48271926 to 48271997 71 + tRNA gene nuclear encoded tRNA cysteine 42 (anticodon GCA)
n-TCgca43 6 48273680 to 48273751 71 + tRNA gene nuclear encoded tRNA cysteine 43 (anticodon GCA)
Gm30362 6 48275245 to 48338162 62917 + lncRNA gene predicted gene, 30362
n-TCgca3 6 48278792 to 48278863 71 - tRNA gene nuclear encoded tRNA cysteine 3 (anticodon GCA)
n-TCgca28 6 48279771 to 48279842 71 - tRNA gene nuclear encoded tRNA cysteine 28 (anticodon GCA)
n-TCgca12 6 48288876 to 48288947 71 - tRNA gene nuclear encoded tRNA cysteine 12 (anticodon GCA)
Tssr56117 6 48289216 to 48289227 11 + TSS region transcription start site region 56117
Gm22122 6 48289228 to 48289427 199 + snRNA gene predicted gene, 22122
n-TCgca50 6 48293007 to 48293078 71 - tRNA gene nuclear encoded tRNA cysteine 50 (anticodon GCA)
n-Tcgca44 6 48297433 to 48297504 71 + tRNA gene nuclear encoded tRNA cysteine 44 (anticodon GCA)
n-TCgca27 6 48298950 to 48299021 71 - tRNA gene nuclear encoded tRNA cysteine 27 (anticodon GCA)
n-TCgca6 6 48302459 to 48302530 71 + tRNA gene nuclear encoded tRNA cysteine 6 (anticodon GCA)
n-TCgca17 6 48303465 to 48303536 71 + tRNA gene nuclear encoded tRNA cysteine 17 (anticodon GCA)
n-TCgca7 6 48305464 to 48305535 71 - tRNA gene nuclear encoded tRNA cysteine 7 (anticodon GCA)
n-TCgca16 6 48308729 to 48308800 71 - tRNA gene nuclear encoded tRNA cysteine 16 (anticodon GCA)
n-TCgca26 6 48309707 to 48309778 71 - tRNA gene nuclear encoded tRNA cysteine 26 (anticodon GCA)
n-TCgca9 6 48311499 to 48311570 71 + tRNA gene nuclear encoded tRNA cysteine 9 (anticodon GCA)
n-TCgca25 6 48313018 to 48313089 71 - tRNA gene nuclear encoded tRNA cysteine 25 (anticodon GCA)
n-TCgca2 6 48316537 to 48316606 69 + tRNA gene nuclear encoded tRNA cysteine 2 (anticodon GCA)
n-TCgca45 6 48317515 to 48317586 71 + tRNA gene nuclear encoded tRNA cysteine 45 (anticodon GCA)
n-TCgca24 6 48332840 to 48332911 71 - tRNA gene nuclear encoded tRNA cysteine 24 (anticodon GCA)
n-TCgca23 6 48336108 to 48336179 71 - tRNA gene nuclear encoded tRNA cysteine 23 (anticodon GCA)
n-TCgca22 6 48337091 to 48337162 71 - tRNA gene nuclear encoded tRNA cysteine 22 (anticodon GCA)
n-TCgca14 6 48340613 to 48340684 71 + tRNA gene nuclear encoded tRNA cysteine 14 (anticodon GCA)
n-TCgca5 6 48341588 to 48341659 71 + tRNA gene nuclear encoded tRNA cysteine 5 (anticodon GCA)
n-TCgca21 6 48349762 to 48349833 71 - tRNA gene nuclear encoded tRNA cysteine 21 (anticodon GCA)
n-TCgca20 6 48354019 to 48354090 71 - tRNA gene nuclear encoded tRNA cysteine 20 (anticodon GCA)
n-TCgca46 6 48355855 to 48355926 71 + tRNA gene nuclear encoded tRNA cysteine 46 (anticodon GCA)
n-TCgca11 6 48356851 to 48356922 71 + tRNA gene nuclear encoded tRNA cysteine 11 (anticodon GCA)
n-TCgca19 6 48363532 to 48363603 71 - tRNA gene nuclear encoded tRNA cysteine 19 (anticodon GCA)
Gm44696 6 48374136 to 48395408 21272 - lincRNA gene predicted gene 44696
Gm7880 6 48381190 to 48382060 870 - pseudogene predicted gene 7880
Cpgi17365 6 48395256 to 48396116 860 CpG island CpG island 17365
Krba1 6 48395586 to 48419781 24195 + protein coding gene KRAB-A domain containing 1
Tssr56118 6 48395604 to 48395646 42 + TSS region transcription start site region 56118
Tssr56119 6 48395652 to 48395688 36 + TSS region transcription start site region 56119
Tssr56120 6 48395691 to 48395713 22 + TSS region transcription start site region 56120
Tssr56121 6 48395817 to 48395828 11 + TSS region transcription start site region 56121
Tssr56122 6 48395837 to 48395872 35 + TSS region transcription start site region 56122
4930447G04Rik 6 48396178 to 48396723 545 unclassified gene RIKEN cDNA 4930447G04 gene
Tssr60725 6 48396741 to 48396767 26 - TSS region transcription start site region 60725
Tssr56123 6 48411587 to 48411599 12 + TSS region transcription start site region 56123
Tssr56124 6 48411613 to 48411624 11 + TSS region transcription start site region 56124
Tssr56125 6 48412156 to 48412170 14 + TSS region transcription start site region 56125
Tssr56126 6 48413022 to 48413034 12 + TSS region transcription start site region 56126
Gm24325 6 48420769 to 48420842 73 + miRNA gene predicted gene, 24325
Gm38803 6 48422358 to 48427562 5204 + lncRNA gene predicted gene, 38803
Zfp467 6 48427697 to 48445825 18128 - protein coding gene zinc finger protein 467
Cpgi17366 6 48437961 to 48439469 1508 CpG island CpG island 17366
Tssr60726 6 48439612 to 48439624 12 - TSS region transcription start site region 60726
Cpgi17367 6 48444861 to 48446092 1231 CpG island CpG island 17367
Tssr60727 6 48445427 to 48445505 78 - TSS region transcription start site region 60727
Tssr60728 6 48445513 to 48445534 21 - TSS region transcription start site region 60728
Tssr60729 6 48445678 to 48445689 11 - TSS region transcription start site region 60729
Tssr60730 6 48445730 to 48445741 11 - TSS region transcription start site region 60730
Tssr60731 6 48445744 to 48445821 77 - TSS region transcription start site region 60731
Tssr60732 6 48445826 to 48445847 21 - TSS region transcription start site region 60732
Tssr56127 6 48448100 to 48448122 22 + TSS region transcription start site region 56127
Sspo 6 48448229 to 48501250 53021 + protein coding gene SCO-spondin
Tssr60733 6 48448665 to 48448685 20 - TSS region transcription start site region 60733
Tssr56128 6 48467828 to 48467838 10 + TSS region transcription start site region 56128
Tssr56129 6 48478698 to 48478711 13 + TSS region transcription start site region 56129
Cpgi17368 6 48504182 to 48504595 413 CpG island CpG island 17368
Tssr56130 6 48504330 to 48504406 76 + TSS region transcription start site region 56130
Zfp862-ps 6 48504339 to 48534832 30493 + pseudogene zinc finger protein 862, pseudogene
Tssr56131 6 48508334 to 48508354 20 + TSS region transcription start site region 56131
Tssr56132 6 48523446 to 48523455 9 + TSS region transcription start site region 56132
Gm10243 6 48523518 to 48523850 332 + pseudogene predicted gene 10243
Gm7887 6 48524554 to 48525090 536 - pseudogene predicted gene 7887
1700026J14Rik 6 48536582 to 48537474 892 - lincRNA gene RIKEN cDNA 1700026J14 gene
Cpgi17369 6 48537440 to 48537975 535 CpG island CpG island 17369
Tssr56133 6 48537560 to 48537622 62 + TSS region transcription start site region 56133
Atp6v0e2 6 48537615 to 48541801 4186 + protein coding gene ATPase, H+ transporting, lysosomal V0 subunit E2
Tssr56134 6 48537631 to 48537733 102 + TSS region transcription start site region 56134
Tssr56135 6 48537755 to 48537768 13 + TSS region transcription start site region 56135
Tssr56136 6 48540488 to 48540500 12 + TSS region transcription start site region 56136
Cpgi17370 6 48554457 to 48555013 556 CpG island CpG island 17370
Tssr60734 6 48554657 to 48554666 9 - TSS region transcription start site region 60734
Tssr60735 6 48554674 to 48554687 13 - TSS region transcription start site region 60735
Tssr60736 6 48554717 to 48554731 14 - TSS region transcription start site region 60736
Tssr56137 6 48554776 to 48554845 69 + TSS region transcription start site region 56137
Lrrc61 6 48554796 to 48570722 15926 + protein coding gene leucine rich repeat containing 61
Tssr56138 6 48554930 to 48554962 32 + TSS region transcription start site region 56138
Rarres2 6 48569696 to 48572789 3093 - protein coding gene retinoic acid receptor responder (tazarotene induced) 2