Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:47629266-48020867

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm44141 6 47635297 to 47636879 1582 + unclassified gene predicted gene, 44141
Tssr56096 6 47636577 to 47636607 30 + TSS region transcription start site region 56096
Tssr60701 6 47636870 to 47636883 13 - TSS region transcription start site region 60701
Tssr60702 6 47636891 to 47636914 23 - TSS region transcription start site region 60702
Gm25283 6 47637143 to 47637219 76 + unclassified non-coding RNA gene predicted gene, 25283
Gm40371 6 47644607 to 47651846 7239 - lncRNA gene predicted gene, 40371
Cpgi17349 6 47650694 to 47651619 925 CpG island CpG island 17349
Gm40369 6 47652126 to 47656124 3998 + protein coding gene predicted gene, 40369
Rn4.5s 6 47654921 to 47655094 173 - rRNA gene 4.5S RNA
Gm40368 6 47656370 to 47660430 4060 + protein coding gene predicted gene, 40368
Gm40367 6 47660679 to 47664791 4112 + protein coding gene predicted gene, 40367
Gm36504 6 47665038 to 47669121 4083 + protein coding gene predicted gene, 36504
Gm40365 6 47669368 to 47673447 4079 + protein coding gene predicted gene, 40365
Gm36327 6 47673689 to 47677773 4084 + protein coding gene predicted gene, 36327
Gm40364 6 47678022 to 47682091 4069 + protein coding gene predicted gene, 40364
Gm40363 6 47682345 to 47738326 55981 + protein coding gene predicted gene, 40363
Cpgi17350 6 47740297 to 47740465 168 CpG island CpG island 17350
Gm36673 6 47762210 to 47773095 10885 + lncRNA gene predicted gene, 36673
Cpgi17351 6 47778200 to 47778748 548 CpG island CpG island 17351
Tssr60703 6 47778336 to 47778339 3 - TSS region transcription start site region 60703
Tssr60704 6 47780681 to 47780688 7 - TSS region transcription start site region 60704
Tssr56097 6 47781618 to 47781628 10 + TSS region transcription start site region 56097
Rny3 6 47781624 to 47781724 100 + scRNA gene RNA, Y3 small cytoplasmic (associated with Ro protein)
Tssr56098 6 47781639 to 47781678 39 + TSS region transcription start site region 56098
D6Mit315 6 47785022 to 47785116 94 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 315
Rpl31-ps7 6 47785996 to 47786374 378 - pseudogene ribosomal protein L31, pseudogene 7
Rny1 6 47788070 to 47788180 110 - scRNA gene RNA, Y1 small cytoplasmic, Ro-associated
Tssr60705 6 47788108 to 47788140 32 - TSS region transcription start site region 60705
Tssr60706 6 47788178 to 47788188 10 - TSS region transcription start site region 60706
Pdia4 6 47796141 to 47813430 17289 - protein coding gene protein disulfide isomerase associated 4
Tssr60707 6 47796243 to 47796247 4 - TSS region transcription start site region 60707
Tssr56099 6 47796824 to 47796870 46 + TSS region transcription start site region 56099
Tssr60708 6 47798430 to 47798444 14 - TSS region transcription start site region 60708
Tssr60709 6 47798548 to 47798573 25 - TSS region transcription start site region 60709
Tssr60710 6 47799222 to 47799236 14 - TSS region transcription start site region 60710
Tssr60711 6 47799239 to 47799269 30 - TSS region transcription start site region 60711
Tssr60712 6 47800993 to 47801015 22 - TSS region transcription start site region 60712
Mir704 6 47803576 to 47803652 76 - miRNA gene microRNA 704
Tssr60713 6 47803835 to 47803862 27 - TSS region transcription start site region 60713
Tssr60714 6 47807214 to 47807225 11 - TSS region transcription start site region 60714
Tssr60715 6 47807481 to 47807493 12 - TSS region transcription start site region 60715
Cpgi17352 6 47812987 to 47813782 795 CpG island CpG island 17352
Tssr60716 6 47813338 to 47813369 31 - TSS region transcription start site region 60716
Tssr60717 6 47813377 to 47813409 32 - TSS region transcription start site region 60717
Tssr60718 6 47813514 to 47813528 14 - TSS region transcription start site region 60718
Tssr56100 6 47813758 to 47813787 29 + TSS region transcription start site region 56100
Rpl35a-ps7 6 47815300 to 47815632 332 - pseudogene ribosomal protein L35A, pseudogene 7
Zfp786 6 47819266 to 47830867 11601 - protein coding gene zinc finger protein 786
Cpgi17353 6 47830086 to 47831027 941 CpG island CpG island 17353
Tssr60719 6 47830509 to 47830584 75 - TSS region transcription start site region 60719
Cpgi17354 6 47835444 to 47836525 1081 CpG island CpG island 17354
Tssr56101 6 47835650 to 47835725 75 + TSS region transcription start site region 56101
Zfp398 6 47835661 to 47873537 37876 + protein coding gene zinc finger protein 398
Tssr56102 6 47835728 to 47835739 11 + TSS region transcription start site region 56102
Tssr56103 6 47835749 to 47835777 28 + TSS region transcription start site region 56103
Tssr56104 6 47835786 to 47835797 11 + TSS region transcription start site region 56104
Tssr56105 6 47835798 to 47835824 26 + TSS region transcription start site region 56105
Gm44041 6 47847743 to 47848138 395 + pseudogene predicted gene, 44041
Tssr56106 6 47869982 to 47869985 3 + TSS region transcription start site region 56106
Zfp282 6 47877209 to 47908485 31276 + protein coding gene zinc finger protein 282
Cpgi17355 6 47877320 to 47878437 1117 CpG island CpG island 17355
Tssr56107 6 47877548 to 47877569 21 + TSS region transcription start site region 56107
Tssr56108 6 47877571 to 47877594 23 + TSS region transcription start site region 56108
Tssr56109 6 47877620 to 47877640 20 + TSS region transcription start site region 56109
Tssr56110 6 47877643 to 47877708 65 + TSS region transcription start site region 56110
Cpgi17356 6 47904501 to 47905558 1057 CpG island CpG island 17356
Cpgi17357 6 47920285 to 47921228 943 CpG island CpG island 17357
Zfp212 6 47920568 to 47932639 12071 + protein coding gene Zinc finger protein 212
Tssr56111 6 47920584 to 47920636 52 + TSS region transcription start site region 56111
Cpgi17358 6 47942690 to 47943725 1035 CpG island CpG island 17358
Tssr56112 6 47943141 to 47943215 74 + TSS region transcription start site region 56112
Zfp783 6 47943175 to 47954549 11374 + pseudogene zinc finger protein 783
Cpgi17359 6 47953141 to 47953825 684 CpG island CpG island 17359
Zfp956 6 47953390 to 47965300 11910 + protein coding gene zinc finger protein 956
Tssr56113 6 47953390 to 47953451 61 + TSS region transcription start site region 56113
Tssr56114 6 47953458 to 47953468 10 + TSS region transcription start site region 56114
Gm6443 6 47977003 to 47977876 873 - pseudogene predicted gene 6443
n-TCgca57 6 47978997 to 47979068 71 + tRNA gene nuclear encoded tRNA cysteine 57 (anticodon GCA)
Cpgi17360 6 48016110 to 48016300 190 CpG island CpG island 17360