Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:47095694-48206619

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166 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cntnap2 6 45060061 to 47301393 2241332 + protein coding gene contactin associated protein-like 2
D6Mit75 6 47112360 to 47112509 149 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 75
Gm35798 6 47120009 to 47124958 4949 - lncRNA gene predicted gene, 35798
4930432J01Rik 6 47139211 to 47164232 25021 unclassified non-coding RNA gene RIKEN cDNA 4930432J01 gene
D6Mit1008a 6 47144202 to 47144315 113 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 1008a
D6Mit1008b 6 47163130 to 47163243 113 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 1008b
Tssr60689 6 47190433 to 47190442 9 - TSS region transcription start site region 60689
Gm35280 6 47191384 to 47259162 67778 - lncRNA gene predicted gene, 35280
Gm35565 6 47227498 to 47230585 3087 + lncRNA gene predicted gene, 35565
Tssr56075 6 47244359 to 47244417 58 + TSS region transcription start site region 56075
Tssr56076 6 47244418 to 47244437 19 + TSS region transcription start site region 56076
Tssr56077 6 47244438 to 47244449 11 + TSS region transcription start site region 56077
Tssr60690 6 47302666 to 47302667 1 - TSS region transcription start site region 60690
Gm18584 6 47432123 to 47432820 697 - pseudogene predicted gene, 18584
Cpgi17347 6 47453476 to 47455224 1748 CpG island CpG island 17347
Cul1 6 47453737 to 47526139 72402 + protein coding gene cullin 1
A930035D04Rik 6 47453776 to 47454320 544 - unclassified gene RIKEN cDNA A930035D04 gene
Tssr56078 6 47453831 to 47453868 37 + TSS region transcription start site region 56078
Tssr56079 6 47453874 to 47453907 33 + TSS region transcription start site region 56079
Tssr56080 6 47453913 to 47453929 16 + TSS region transcription start site region 56080
Tssr56081 6 47453954 to 47453992 38 + TSS region transcription start site region 56081
Tssr56082 6 47454006 to 47454017 11 + TSS region transcription start site region 56082
Tssr56083 6 47454340 to 47454423 83 + TSS region transcription start site region 56083
Tssr56084 6 47454433 to 47454445 12 + TSS region transcription start site region 56084
Tssr60691 6 47454609 to 47454627 18 - TSS region transcription start site region 60691
Tssr60692 6 47454637 to 47454648 11 - TSS region transcription start site region 60692
Tssr56085 6 47454682 to 47454701 19 + TSS region transcription start site region 56085
Tssr56086 6 47454702 to 47454719 17 + TSS region transcription start site region 56086
Tssr60693 6 47454842 to 47454866 24 - TSS region transcription start site region 60693
Tssr56087 6 47454985 to 47454994 9 + TSS region transcription start site region 56087
Tssr56088 6 47454999 to 47455008 9 + TSS region transcription start site region 56088
Tssr60694 6 47455051 to 47455069 18 - TSS region transcription start site region 60694
9430013L14Rik 6 47463339 to 47464553 1214 unclassified gene RIKEN cDNA 9430013L14 gene
Tssr56089 6 47468129 to 47468132 3 + TSS region transcription start site region 56089
Tssr56090 6 47468350 to 47468355 5 + TSS region transcription start site region 56090
D6Dcr7 6 47469253 to 47469361 108 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 7
D6Mit352 6 47469256 to 47469364 108 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 352
Tssr56091 6 47480787 to 47480794 7 + TSS region transcription start site region 56091
Tssr56092 6 47510174 to 47510175 1 + TSS region transcription start site region 56092
Tssr56093 6 47522332 to 47522336 4 + TSS region transcription start site region 56093
Ezh2 6 47530274 to 47595340 65066 - protein coding gene enhancer of zeste 2 polycomb repressive complex 2 subunit
Tssr56094 6 47545696 to 47545716 20 + TSS region transcription start site region 56094
Gm26625 6 47546666 to 47551704 5038 + lincRNA gene predicted gene, 26625
Tssr60695 6 47550970 to 47550981 11 - TSS region transcription start site region 60695
Tssr60696 6 47556098 to 47556114 16 - TSS region transcription start site region 60696
Tssr60697 6 47563265 to 47563280 15 - TSS region transcription start site region 60697
D6Mit351 6 47574728 to 47574837 109 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 351
D430047D06Rik 6 47580282 to 47583708 3426 unclassified gene RIKEN cDNA D430047D06 gene
Tssr1830 6 47584175 to 47584182 7 - TSS region transcription start site region 1830
Gm44282 6 47585216 to 47585405 189 + pseudogene predicted gene, 44282
Cpgi17348 6 47594102 to 47595767 1665 CpG island CpG island 17348
Tssr60698 6 47594777 to 47594788 11 - TSS region transcription start site region 60698
Tssr60699 6 47594967 to 47595047 80 - TSS region transcription start site region 60699
Tssr60700 6 47595053 to 47595065 12 - TSS region transcription start site region 60700
Tssr56095 6 47595161 to 47595217 56 + TSS region transcription start site region 56095
F830010H11Rik 6 47595189 to 47597526 2337 unclassified gene RIKEN cDNA F830010H11 gene
Gm44141 6 47635297 to 47636879 1582 + unclassified gene predicted gene, 44141
Tssr56096 6 47636577 to 47636607 30 + TSS region transcription start site region 56096
Tssr60701 6 47636870 to 47636883 13 - TSS region transcription start site region 60701
Tssr60702 6 47636891 to 47636914 23 - TSS region transcription start site region 60702
Gm25283 6 47637143 to 47637219 76 + unclassified non-coding RNA gene predicted gene, 25283
Gm40371 6 47644607 to 47651846 7239 - lncRNA gene predicted gene, 40371
Cpgi17349 6 47650694 to 47651619 925 CpG island CpG island 17349
Gm40369 6 47652126 to 47656124 3998 + protein coding gene predicted gene, 40369
Rn4.5s 6 47654921 to 47655094 173 - rRNA gene 4.5S RNA
Gm40368 6 47656370 to 47660430 4060 + protein coding gene predicted gene, 40368
Gm40367 6 47660679 to 47664791 4112 + protein coding gene predicted gene, 40367
Gm36504 6 47665038 to 47669121 4083 + protein coding gene predicted gene, 36504
Gm40365 6 47669368 to 47673447 4079 + protein coding gene predicted gene, 40365
Gm36327 6 47673689 to 47677773 4084 + protein coding gene predicted gene, 36327
Gm40364 6 47678022 to 47682091 4069 + protein coding gene predicted gene, 40364
Gm40363 6 47682345 to 47738326 55981 + protein coding gene predicted gene, 40363
Cpgi17350 6 47740297 to 47740465 168 CpG island CpG island 17350
Gm36673 6 47762210 to 47773095 10885 + lncRNA gene predicted gene, 36673
Cpgi17351 6 47778200 to 47778748 548 CpG island CpG island 17351
Tssr60703 6 47778336 to 47778339 3 - TSS region transcription start site region 60703
Tssr60704 6 47780681 to 47780688 7 - TSS region transcription start site region 60704
Tssr56097 6 47781618 to 47781628 10 + TSS region transcription start site region 56097
Rny3 6 47781624 to 47781724 100 + scRNA gene RNA, Y3 small cytoplasmic (associated with Ro protein)
Tssr56098 6 47781639 to 47781678 39 + TSS region transcription start site region 56098
D6Mit315 6 47785022 to 47785116 94 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 315
Rpl31-ps7 6 47785996 to 47786374 378 - pseudogene ribosomal protein L31, pseudogene 7
Rny1 6 47788070 to 47788180 110 - scRNA gene RNA, Y1 small cytoplasmic, Ro-associated
Tssr60705 6 47788108 to 47788140 32 - TSS region transcription start site region 60705
Tssr60706 6 47788178 to 47788188 10 - TSS region transcription start site region 60706
Pdia4 6 47796141 to 47813430 17289 - protein coding gene protein disulfide isomerase associated 4
Tssr60707 6 47796243 to 47796247 4 - TSS region transcription start site region 60707
Tssr56099 6 47796824 to 47796870 46 + TSS region transcription start site region 56099
Tssr60708 6 47798430 to 47798444 14 - TSS region transcription start site region 60708
Tssr60709 6 47798548 to 47798573 25 - TSS region transcription start site region 60709
Tssr60710 6 47799222 to 47799236 14 - TSS region transcription start site region 60710
Tssr60711 6 47799239 to 47799269 30 - TSS region transcription start site region 60711
Tssr60712 6 47800993 to 47801015 22 - TSS region transcription start site region 60712
Mir704 6 47803576 to 47803652 76 - miRNA gene microRNA 704
Tssr60713 6 47803835 to 47803862 27 - TSS region transcription start site region 60713
Tssr60714 6 47807214 to 47807225 11 - TSS region transcription start site region 60714
Tssr60715 6 47807481 to 47807493 12 - TSS region transcription start site region 60715
Cpgi17352 6 47812987 to 47813782 795 CpG island CpG island 17352
Tssr60716 6 47813338 to 47813369 31 - TSS region transcription start site region 60716
Tssr60717 6 47813377 to 47813409 32 - TSS region transcription start site region 60717
Tssr60718 6 47813514 to 47813528 14 - TSS region transcription start site region 60718
Tssr56100 6 47813758 to 47813787 29 + TSS region transcription start site region 56100
Rpl35a-ps7 6 47815300 to 47815632 332 - pseudogene ribosomal protein L35A, pseudogene 7
Zfp786 6 47819266 to 47830867 11601 - protein coding gene zinc finger protein 786
Cpgi17353 6 47830086 to 47831027 941 CpG island CpG island 17353
Tssr60719 6 47830509 to 47830584 75 - TSS region transcription start site region 60719
Cpgi17354 6 47835444 to 47836525 1081 CpG island CpG island 17354
Tssr56101 6 47835650 to 47835725 75 + TSS region transcription start site region 56101
Zfp398 6 47835661 to 47873537 37876 + protein coding gene zinc finger protein 398
Tssr56102 6 47835728 to 47835739 11 + TSS region transcription start site region 56102
Tssr56103 6 47835749 to 47835777 28 + TSS region transcription start site region 56103
Tssr56104 6 47835786 to 47835797 11 + TSS region transcription start site region 56104
Tssr56105 6 47835798 to 47835824 26 + TSS region transcription start site region 56105
Gm44041 6 47847743 to 47848138 395 + pseudogene predicted gene, 44041
Tssr56106 6 47869982 to 47869985 3 + TSS region transcription start site region 56106
Zfp282 6 47877209 to 47908485 31276 + protein coding gene zinc finger protein 282
Cpgi17355 6 47877320 to 47878437 1117 CpG island CpG island 17355
Tssr56107 6 47877548 to 47877569 21 + TSS region transcription start site region 56107
Tssr56108 6 47877571 to 47877594 23 + TSS region transcription start site region 56108
Tssr56109 6 47877620 to 47877640 20 + TSS region transcription start site region 56109
Tssr56110 6 47877643 to 47877708 65 + TSS region transcription start site region 56110
Cpgi17356 6 47904501 to 47905558 1057 CpG island CpG island 17356
Cpgi17357 6 47920285 to 47921228 943 CpG island CpG island 17357
Zfp212 6 47920568 to 47932639 12071 + protein coding gene Zinc finger protein 212
Tssr56111 6 47920584 to 47920636 52 + TSS region transcription start site region 56111
Cpgi17358 6 47942690 to 47943725 1035 CpG island CpG island 17358
Tssr56112 6 47943141 to 47943215 74 + TSS region transcription start site region 56112
Zfp783 6 47943175 to 47954549 11374 + pseudogene zinc finger protein 783
Cpgi17359 6 47953141 to 47953825 684 CpG island CpG island 17359
Tssr56113 6 47953390 to 47953451 61 + TSS region transcription start site region 56113
Zfp956 6 47953390 to 47965300 11910 + protein coding gene zinc finger protein 956
Tssr56114 6 47953458 to 47953468 10 + TSS region transcription start site region 56114
Gm6443 6 47977003 to 47977876 873 - pseudogene predicted gene 6443
n-TCgca57 6 47978997 to 47979068 71 + tRNA gene nuclear encoded tRNA cysteine 57 (anticodon GCA)
Cpgi17360 6 48016110 to 48016300 190 CpG island CpG island 17360
Zfp777 6 48024188 to 48048911 24723 - protein coding gene zinc finger protein 777
Cpgi17361 6 48024479 to 48025599 1120 CpG island CpG island 17361
Gm45738 6 48045548 to 48045955 407 - sense intronic lncRNA gene predicted gene 45738
Cpgi17362 6 48047214 to 48049214 2000 CpG island CpG island 17362
Tssr60720 6 48048499 to 48048528 29 - TSS region transcription start site region 60720
Gm24563 6 48048703 to 48048795 92 + miRNA gene predicted gene, 24563
Tssr60721 6 48048856 to 48048864 8 - TSS region transcription start site region 60721
Tssr60722 6 48048939 to 48048956 17 - TSS region transcription start site region 60722
Zfp746 6 48062395 to 48086593 24198 - protein coding gene zinc finger protein 746
Cpgi17363 6 48063818 to 48064489 671 CpG island CpG island 17363
Tssr60723 6 48064563 to 48064591 28 - TSS region transcription start site region 60723
Tssr56115 6 48065924 to 48065966 42 + TSS region transcription start site region 56115
Gt(pU21)138Imeg 6 48065950 to 48066049 99 unclassified gene gene trap 138, Institute of Molecular Embryology and Genetics
Tssr56116 6 48073632 to 48073645 13 + TSS region transcription start site region 56116
Cpgi17364 6 48085398 to 48086957 1559 CpG island CpG island 17364
Tssr60724 6 48086530 to 48086658 128 - TSS region transcription start site region 60724
Gm30435 6 48130473 to 48146077 15604 + lncRNA gene predicted gene, 30435
Gm16630 6 48130906 to 48159280 28374 - lincRNA gene predicted gene, 16630
n-TCgca37 6 48133937 to 48134008 71 + tRNA gene nuclear encoded tRNA cysteine 37 (anticodon GCA)
n-TCgca10 6 48139510 to 48139581 71 - tRNA gene nuclear encoded tRNA cysteine 10 (anticodon GCA)
n-TCgca4 6 48140484 to 48140555 71 - tRNA gene nuclear encoded tRNA cysteine 4 (anticodon GCA)
n-TCgca13 6 48143356 to 48143427 71 + tRNA gene nuclear encoded tRNA cysteine 13 (anticodon GCA)
n-TCgca36 6 48144928 to 48144999 71 - tRNA gene nuclear encoded tRNA cysteine 36 (anticodon GCA)
n-TCgca38 6 48154714 to 48154785 71 + tRNA gene nuclear encoded tRNA cysteine 38 (anticodon GCA)
n-TCgca35 6 48156275 to 48156346 71 - tRNA gene nuclear encoded tRNA cysteine 35 (anticodon GCA)
n-TCgca39 6 48160179 to 48160250 71 + tRNA gene nuclear encoded tRNA cysteine 39 (anticodon GCA)
n-TCgca40 6 48164101 to 48164172 71 + tRNA gene nuclear encoded tRNA cysteine 40 (anticodon GCA)
D6Mit43 6 48164233 to 48164439 206 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 43
n-TCgca8 6 48186318 to 48186389 71 + tRNA gene nuclear encoded tRNA cysteine 8 (anticodon GCA)
n-TCgca41 6 48197026 to 48197097 71 + tRNA gene nuclear encoded tRNA cysteine 41 (anticodon GCA)
n-TCgca1 6 48205068 to 48205139 71 + tRNA gene nuclear encoded tRNA cysteine 1 (anticodon GCA)