Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:4700852-5776242

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180 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sgce 6 4674350 to 4747204 72854 - protein coding gene sarcoglycan, epsilon
Tssr59720 6 4717135 to 4717166 31 - TSS region transcription start site region 59720
Tssr59721 6 4717169 to 4717184 15 - TSS region transcription start site region 59721
Tssr59722 6 4717208 to 4717223 15 - TSS region transcription start site region 59722
Tssr59723 6 4736421 to 4736441 20 - TSS region transcription start site region 59723
Tssr59724 6 4746391 to 4746395 4 - TSS region transcription start site region 59724
Cpgi17126 6 4746791 to 4748791 2000 CpG island CpG island 17126
Tssr59725 6 4747018 to 4747030 12 - TSS region transcription start site region 59725
Tssr59726 6 4747045 to 4747056 11 - TSS region transcription start site region 59726
Tssr59727 6 4747066 to 4747132 66 - TSS region transcription start site region 59727
Tssr59728 6 4747170 to 4747184 14 - TSS region transcription start site region 59728
Tssr1771 6 4747298 to 4747354 56 + TSS region transcription start site region 1771
Peg10 6 4747306 to 4760517 13211 + protein coding gene paternally expressed 10
Tssr54763 6 4747360 to 4747372 12 + TSS region transcription start site region 54763
Tssr1772 6 4747431 to 4747441 10 + TSS region transcription start site region 1772
Tssr1773 6 4747442 to 4747452 10 + TSS region transcription start site region 1773
Tssr54764 6 4747610 to 4747613 3 + TSS region transcription start site region 54764
Tssr54765 6 4752802 to 4752812 10 + TSS region transcription start site region 54765
Tssr54766 6 4754131 to 4754145 14 + TSS region transcription start site region 54766
Tssr54767 6 4754193 to 4754201 8 + TSS region transcription start site region 54767
Tssr54768 6 4754231 to 4754242 11 + TSS region transcription start site region 54768
Tssr59729 6 4754235 to 4754257 22 - TSS region transcription start site region 59729
Tssr54769 6 4754246 to 4754275 29 + TSS region transcription start site region 54769
Tssr54770 6 4754429 to 4754440 11 + TSS region transcription start site region 54770
Tssr54771 6 4754570 to 4754581 11 + TSS region transcription start site region 54771
Cpgi17127 6 4754723 to 4755432 709 CpG island CpG island 17127
Tssr54772 6 4755119 to 4755137 18 + TSS region transcription start site region 54772
Tssr54773 6 4755356 to 4755357 1 + TSS region transcription start site region 54773
Tssr54774 6 4755368 to 4755384 16 + TSS region transcription start site region 54774
Tssr54775 6 4755397 to 4755408 11 + TSS region transcription start site region 54775
Tssr54776 6 4755442 to 4755462 20 + TSS region transcription start site region 54776
Tssr54777 6 4755566 to 4755573 7 + TSS region transcription start site region 54777
Tssr54778 6 4755579 to 4755590 11 + TSS region transcription start site region 54778
Tssr54779 6 4755598 to 4755607 9 + TSS region transcription start site region 54779
Tssr54780 6 4755723 to 4755751 28 + TSS region transcription start site region 54780
Tssr54781 6 4755792 to 4755809 17 + TSS region transcription start site region 54781
Tssr54782 6 4755947 to 4755948 1 + TSS region transcription start site region 54782
Tssr54783 6 4755983 to 4756002 19 + TSS region transcription start site region 54783
Tssr54784 6 4756051 to 4756066 15 + TSS region transcription start site region 54784
Tssr54785 6 4756386 to 4756395 9 + TSS region transcription start site region 54785
Tssr54786 6 4756411 to 4756421 10 + TSS region transcription start site region 54786
Tssr54787 6 4756465 to 4756475 10 + TSS region transcription start site region 54787
Tssr54788 6 4756526 to 4756550 24 + TSS region transcription start site region 54788
Tssr54789 6 4756592 to 4756605 13 + TSS region transcription start site region 54789
Tssr59730 6 4756602 to 4756612 10 - TSS region transcription start site region 59730
Tssr54790 6 4756618 to 4756638 20 + TSS region transcription start site region 54790
Tssr54791 6 4756672 to 4756693 21 + TSS region transcription start site region 54791
Tssr54792 6 4756711 to 4756725 14 + TSS region transcription start site region 54792
Tssr54793 6 4756731 to 4756742 11 + TSS region transcription start site region 54793
Tssr54794 6 4756797 to 4756816 19 + TSS region transcription start site region 54794
Tssr54795 6 4756824 to 4756844 20 + TSS region transcription start site region 54795
Tssr54796 6 4756860 to 4756872 12 + TSS region transcription start site region 54796
Tssr54797 6 4756948 to 4756960 12 + TSS region transcription start site region 54797
Tssr54798 6 4757019 to 4757034 15 + TSS region transcription start site region 54798
Tssr59731 6 4757061 to 4757084 23 - TSS region transcription start site region 59731
Tssr54799 6 4757079 to 4757093 14 + TSS region transcription start site region 54799
Tssr54800 6 4757385 to 4757402 17 + TSS region transcription start site region 54800
Tssr54801 6 4758298 to 4758301 3 + TSS region transcription start site region 54801
Tssr54802 6 4758347 to 4758350 3 + TSS region transcription start site region 54802
Tssr54803 6 4758415 to 4758426 11 + TSS region transcription start site region 54803
Tssr54804 6 4758433 to 4758438 5 + TSS region transcription start site region 54804
Tssr54805 6 4758451 to 4758464 13 + TSS region transcription start site region 54805
Tssr54806 6 4758482 to 4758497 15 + TSS region transcription start site region 54806
Tssr54807 6 4758499 to 4758510 11 + TSS region transcription start site region 54807
Tssr54808 6 4758548 to 4758581 33 + TSS region transcription start site region 54808
Tssr54809 6 4758591 to 4758598 7 + TSS region transcription start site region 54809
Tssr54810 6 4758669 to 4758682 13 + TSS region transcription start site region 54810
Tssr54811 6 4758729 to 4758740 11 + TSS region transcription start site region 54811
Tssr54812 6 4758899 to 4758906 7 + TSS region transcription start site region 54812
Tssr54813 6 4758918 to 4758936 18 + TSS region transcription start site region 54813
Tssr54814 6 4759471 to 4759474 3 + TSS region transcription start site region 54814
Tssr54815 6 4759492 to 4759504 12 + TSS region transcription start site region 54815
Tssr54816 6 4759510 to 4759524 14 + TSS region transcription start site region 54816
Tssr54817 6 4759526 to 4759537 11 + TSS region transcription start site region 54817
Tssr54818 6 4759554 to 4759563 9 + TSS region transcription start site region 54818
Tssr54819 6 4759597 to 4759606 9 + TSS region transcription start site region 54819
Tssr54820 6 4759618 to 4759629 11 + TSS region transcription start site region 54820
Tssr54821 6 4759651 to 4759663 12 + TSS region transcription start site region 54821
Tssr54822 6 4759674 to 4759695 21 + TSS region transcription start site region 54822
Tssr54823 6 4759714 to 4759719 5 + TSS region transcription start site region 54823
Tssr54824 6 4759769 to 4759781 12 + TSS region transcription start site region 54824
Tssr54825 6 4759788 to 4759799 11 + TSS region transcription start site region 54825
Tssr54826 6 4759807 to 4759819 12 + TSS region transcription start site region 54826
Tssr1774 6 4759828 to 4759835 7 + TSS region transcription start site region 1774
Tssr54827 6 4759838 to 4759848 10 + TSS region transcription start site region 54827
Tssr54828 6 4759875 to 4759886 11 + TSS region transcription start site region 54828
Tssr54829 6 4759888 to 4759897 9 + TSS region transcription start site region 54829
Tssr54830 6 4759903 to 4759934 31 + TSS region transcription start site region 54830
Tssr54831 6 4759966 to 4759977 11 + TSS region transcription start site region 54831
Tssr54832 6 4759978 to 4759987 9 + TSS region transcription start site region 54832
Tssr54833 6 4760024 to 4760050 26 + TSS region transcription start site region 54833
Tssr54834 6 4760055 to 4760099 44 + TSS region transcription start site region 54834
Tssr54835 6 4760101 to 4760110 9 + TSS region transcription start site region 54835
Tssr54836 6 4760113 to 4760124 11 + TSS region transcription start site region 54836
Tssr54837 6 4760228 to 4760238 10 + TSS region transcription start site region 54837
Tssr54838 6 4760241 to 4760261 20 + TSS region transcription start site region 54838
Tssr54839 6 4760280 to 4760287 7 + TSS region transcription start site region 54839
Gm44121 6 4770900 to 4772905 2005 + unclassified gene predicted gene, 44121
Gm20714 6 4807055 to 4816329 9274 - lincRNA gene predicted gene 20714
Tssr59732 6 4816305 to 4816320 15 - TSS region transcription start site region 59732
Gm26828 6 4832227 to 4832398 171 + pseudogene predicted gene, 26828
Gmfg-ps 6 4893352 to 4893778 426 - pseudogene glia maturation factor, gamma, pseudogene
Cpgi17128 6 4902735 to 4904043 1308 CpG island CpG island 17128
Tssr54840 6 4902913 to 4903014 101 + TSS region transcription start site region 54840
Ppp1r9a 6 4902917 to 5165661 262744 + protein coding gene protein phosphatase 1, regulatory subunit 9A
Tssr54841 6 4903057 to 4903068 11 + TSS region transcription start site region 54841
Tssr54842 6 4903250 to 4903272 22 + TSS region transcription start site region 54842
Tssr54843 6 4903298 to 4903346 48 + TSS region transcription start site region 54843
Tssr54844 6 4903350 to 4903367 17 + TSS region transcription start site region 54844
Tssr59733 6 4903917 to 4903924 7 - TSS region transcription start site region 59733
2210017G18Rik 6 4919625 to 4920829 1204 unclassified non-coding RNA gene RIKEN cDNA 2210017G18 gene
Tssr54845 6 4923495 to 4923512 17 + TSS region transcription start site region 54845
Gm26814 6 4942147 to 4946295 4148 + lincRNA gene predicted gene, 26814
Gm26736 6 4946568 to 4947803 1235 + lincRNA gene predicted gene, 26736
Gm26556 6 4958983 to 4959302 319 + lincRNA gene predicted gene, 26556
Tssr59734 6 5019125 to 5019136 11 - TSS region transcription start site region 59734
Tssr54846 6 5048243 to 5048255 12 + TSS region transcription start site region 54846
Tssr54847 6 5048264 to 5048274 10 + TSS region transcription start site region 54847
Tssr54848 6 5048277 to 5048284 7 + TSS region transcription start site region 54848
Tssr54849 6 5048296 to 5048306 10 + TSS region transcription start site region 54849
Tssr54850 6 5048328 to 5048338 10 + TSS region transcription start site region 54850
Tssr59735 6 5054634 to 5054636 2 - TSS region transcription start site region 59735
C230037E05Rik 6 5087716 to 5091733 4017 unclassified non-coding RNA gene RIKEN cDNA C230037E05 gene
Tssr54851 6 5110652 to 5110664 12 + TSS region transcription start site region 54851
Gm46949 6 5151237 to 5153490 2253 - lncRNA gene predicted gene, 46949
Tssr54852 6 5163673 to 5163684 11 + TSS region transcription start site region 54852
Pon1 6 5168090 to 5193946 25856 - protein coding gene paraoxonase 1
Tssr59736 6 5178284 to 5178291 7 - TSS region transcription start site region 59736
Tssr59737 6 5182784 to 5182788 4 - TSS region transcription start site region 59737
Tssr59738 6 5188748 to 5188768 20 - TSS region transcription start site region 59738
Tssr59739 6 5193757 to 5193809 52 - TSS region transcription start site region 59739
Tssr59740 6 5193817 to 5193831 14 - TSS region transcription start site region 59740
Gm44250 6 5216258 to 5220486 4228 - unclassified gene predicted gene, 44250
Tssr59741 6 5220487 to 5220501 14 - TSS region transcription start site region 59741
Pon3 6 5220852 to 5256242 35390 - protein coding gene paraoxonase 3
Tssr59742 6 5220930 to 5220949 19 - TSS region transcription start site region 59742
Tssr59743 6 5254512 to 5254521 9 - TSS region transcription start site region 59743
Tssr59744 6 5256226 to 5256278 52 - TSS region transcription start site region 59744
Tssr59745 6 5256281 to 5256288 7 - TSS region transcription start site region 59745
Pon2 6 5264620 to 5298373 33753 - protein coding gene paraoxonase 2
Gm44424 6 5279655 to 5281480 1825 + unclassified gene predicted gene, 44424
Cpgi17129 6 5297941 to 5298556 615 CpG island CpG island 17129
Tssr59746 6 5298301 to 5298377 76 - TSS region transcription start site region 59746
Tssr59747 6 5298397 to 5298408 11 - TSS region transcription start site region 59747
Tssr59748 6 5298462 to 5298476 14 - TSS region transcription start site region 59748
Tssr59749 6 5325268 to 5325294 26 - TSS region transcription start site region 59749
Gm38762 6 5362315 to 5372988 10673 + lncRNA gene predicted gene, 38762
D6Mit166 6 5367489 to 5367588 99 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 166
Asb4 6 5383386 to 5433022 49636 + protein coding gene ankyrin repeat and SOCS box-containing 4
Tssr54853 6 5390289 to 5390296 7 + TSS region transcription start site region 54853
Tssr54854 6 5390343 to 5390365 22 + TSS region transcription start site region 54854
Tssr54855 6 5390387 to 5390423 36 + TSS region transcription start site region 54855
Tssr54856 6 5390439 to 5390452 13 + TSS region transcription start site region 54856
Tssr54857 6 5390501 to 5390517 16 + TSS region transcription start site region 54857
Tssr54858 6 5390518 to 5390546 28 + TSS region transcription start site region 54858
Tssr54859 6 5390703 to 5390716 13 + TSS region transcription start site region 54859
Tssr59750 6 5398326 to 5398365 39 - TSS region transcription start site region 59750
Tssr54860 6 5398399 to 5398411 12 + TSS region transcription start site region 54860
Tssr54861 6 5398421 to 5398432 11 + TSS region transcription start site region 54861
Cpgi17130 6 5423388 to 5423828 440 CpG island CpG island 17130
Pdk4 6 5483351 to 5496278 12927 - protein coding gene pyruvate dehydrogenase kinase, isoenzyme 4
Tssr59751 6 5484156 to 5484173 17 - TSS region transcription start site region 59751
Tssr59752 6 5491678 to 5491684 6 - TSS region transcription start site region 59752
Tssr59753 6 5495841 to 5495852 11 - TSS region transcription start site region 59753
Tssr59754 6 5495874 to 5495881 7 - TSS region transcription start site region 59754
Cpgi17131 6 5495898 to 5496640 742 CpG island CpG island 17131
Tssr59755 6 5495919 to 5495932 13 - TSS region transcription start site region 59755
Tssr59756 6 5496285 to 5496290 5 - TSS region transcription start site region 59756
Tssr59757 6 5496296 to 5496316 20 - TSS region transcription start site region 59757
Tssr1775 6 5511137 to 5511144 7 + TSS region transcription start site region 1775
Tssr54862 6 5511148 to 5511176 28 + TSS region transcription start site region 54862
D6Mit179 6 5540393 to 5540498 105 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 179
Gm34470 6 5563663 to 5570318 6655 + lncRNA gene predicted gene, 34470
Gm46983 6 5643747 to 5645853 2106 + lncRNA gene predicted gene, 46983
D6Mit296 6 5712950 to 5713049 99 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 296
Cpgi17132 6 5725573 to 5726164 591 CpG island CpG island 17132
Dync1i1 6 5725639 to 6028039 302400 + protein coding gene dynein cytoplasmic 1 intermediate chain 1
Tssr54863 6 5725738 to 5725801 63 + TSS region transcription start site region 54863
Tssr54864 6 5725812 to 5725858 46 + TSS region transcription start site region 54864
Tssr54865 6 5725877 to 5725888 11 + TSS region transcription start site region 54865