Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:45328756-47501285

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cntnap2 6 45060061 to 47301393 2241332 + protein coding gene contactin associated protein-like 2
Gm43884 6 45329238 to 45329796 558 + unclassified gene predicted gene, 43884
Gm43880 6 45413235 to 45415396 2161 + unclassified gene predicted gene, 43880
Gm43876 6 45529083 to 45532311 3228 + unclassified gene predicted gene, 43876
Tssr56069 6 45545880 to 45545886 6 + TSS region transcription start site region 56069
Tssr1828 6 45808887 to 45808889 2 - TSS region transcription start site region 1828
Gm18483 6 45894474 to 45895029 555 - pseudogene predicted gene, 18483
Gm43886 6 45901938 to 45904323 2385 + unclassified gene predicted gene, 43886
Gm22839 6 46037776 to 46038079 303 + unclassified non-coding RNA gene predicted gene, 22839
Tssr56070 6 46041061 to 46041064 3 + TSS region transcription start site region 56070
Gm43871 6 46041951 to 46043905 1954 + unclassified gene predicted gene, 43871
Gm43873 6 46045143 to 46049080 3937 + unclassified gene predicted gene, 43873
Gm43877 6 46049158 to 46051395 2237 + unclassified gene predicted gene, 43877
Gm43888 6 46072409 to 46074995 2586 + unclassified gene predicted gene, 43888
Gm43887 6 46076179 to 46079364 3185 + unclassified gene predicted gene, 43887
Gm43870 6 46134102 to 46138470 4368 + unclassified gene predicted gene, 43870
Tssr60686 6 46147891 to 46147902 11 - TSS region transcription start site region 60686
D6Mit349 6 46184812 to 46184935 123 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 349
Tssr1829 6 46213952 to 46213955 3 + TSS region transcription start site region 1829
Gm43881 6 46413756 to 46416285 2529 + unclassified gene predicted gene, 43881
Gm25161 6 46481709 to 46481840 131 - snoRNA gene predicted gene, 25161
Gm43875 6 46486643 to 46489117 2474 + unclassified gene predicted gene, 43875
Rbpj-ps3 6 46529354 to 46530794 1440 - pseudogene recombination signal binding protein for immunoglobulin kappa J region, pseudogene 3
Tssr60687 6 46530186 to 46530203 17 - TSS region transcription start site region 60687
Tssr56071 6 46563303 to 46563308 5 + TSS region transcription start site region 56071
Gm18484 6 46637292 to 46638282 990 - pseudogene predicted gene, 18484
Gm35931 6 46778409 to 46778856 447 - pseudogene predicted gene, 35931
Gm43883 6 46785953 to 46789702 3749 + unclassified gene predicted gene, 43883
D6Mit273 6 46935985 to 46936108 123 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 273
Gm38801 6 46952382 to 46958234 5852 - lncRNA gene predicted gene, 38801
Gm35875 6 47006550 to 47040804 34254 - lncRNA gene predicted gene, 35875
Tssr60688 6 47044578 to 47044585 7 - TSS region transcription start site region 60688
Tssr56072 6 47044594 to 47044619 25 + TSS region transcription start site region 56072
Cpgi17346 6 47044710 to 47045070 360 CpG island CpG island 17346
Tssr56073 6 47045022 to 47045027 5 + TSS region transcription start site region 56073
Tssr56074 6 47045045 to 47045061 16 + TSS region transcription start site region 56074
Gm6352 6 47045156 to 47046286 1130 + pseudogene predicted gene 6352
D6Mit224 6 47068326 to 47068474 148 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 224
D6Mit75 6 47112360 to 47112509 149 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 75
Gm35798 6 47120009 to 47124958 4949 - lncRNA gene predicted gene, 35798
4930432J01Rik 6 47139211 to 47164232 25021 unclassified non-coding RNA gene RIKEN cDNA 4930432J01 gene
D6Mit1008a 6 47144202 to 47144315 113 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 1008a
D6Mit1008b 6 47163130 to 47163243 113 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 1008b
Tssr60689 6 47190433 to 47190442 9 - TSS region transcription start site region 60689
Gm35280 6 47191384 to 47259162 67778 - lncRNA gene predicted gene, 35280
Gm35565 6 47227498 to 47230585 3087 + lncRNA gene predicted gene, 35565
Tssr56075 6 47244359 to 47244417 58 + TSS region transcription start site region 56075
Tssr56076 6 47244418 to 47244437 19 + TSS region transcription start site region 56076
Tssr56077 6 47244438 to 47244449 11 + TSS region transcription start site region 56077
Tssr60690 6 47302666 to 47302667 1 - TSS region transcription start site region 60690
Gm18584 6 47432123 to 47432820 697 - pseudogene predicted gene, 18584
Cpgi17347 6 47453476 to 47455224 1748 CpG island CpG island 17347
Cul1 6 47453737 to 47526139 72402 + protein coding gene cullin 1
A930035D04Rik 6 47453776 to 47454320 544 - unclassified gene RIKEN cDNA A930035D04 gene
Tssr56078 6 47453831 to 47453868 37 + TSS region transcription start site region 56078
Tssr56079 6 47453874 to 47453907 33 + TSS region transcription start site region 56079
Tssr56080 6 47453913 to 47453929 16 + TSS region transcription start site region 56080
Tssr56081 6 47453954 to 47453992 38 + TSS region transcription start site region 56081
Tssr56082 6 47454006 to 47454017 11 + TSS region transcription start site region 56082
Tssr56083 6 47454340 to 47454423 83 + TSS region transcription start site region 56083
Tssr56084 6 47454433 to 47454445 12 + TSS region transcription start site region 56084
Tssr60691 6 47454609 to 47454627 18 - TSS region transcription start site region 60691
Tssr60692 6 47454637 to 47454648 11 - TSS region transcription start site region 60692
Tssr56085 6 47454682 to 47454701 19 + TSS region transcription start site region 56085
Tssr56086 6 47454702 to 47454719 17 + TSS region transcription start site region 56086
Tssr60693 6 47454842 to 47454866 24 - TSS region transcription start site region 60693
Tssr56087 6 47454985 to 47454994 9 + TSS region transcription start site region 56087
Tssr56088 6 47454999 to 47455008 9 + TSS region transcription start site region 56088
Tssr60694 6 47455051 to 47455069 18 - TSS region transcription start site region 60694
9430013L14Rik 6 47463339 to 47464553 1214 unclassified gene RIKEN cDNA 9430013L14 gene
Tssr56089 6 47468129 to 47468132 3 + TSS region transcription start site region 56089
Tssr56090 6 47468350 to 47468355 5 + TSS region transcription start site region 56090
D6Dcr7 6 47469253 to 47469361 108 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 7
D6Mit352 6 47469256 to 47469364 108 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 352
Tssr56091 6 47480787 to 47480794 7 + TSS region transcription start site region 56091
Tabw2 6 136423692 to 46935985 -89487707 QTL tally ho associated body weight 2