Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:4516051-4996066

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170 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Col1a2 6 4505618 to 4541543 35925 + protein coding gene collagen, type I, alpha 2
Tssr54721 6 4516391 to 4516413 22 + TSS region transcription start site region 54721
Tssr54722 6 4521387 to 4521423 36 + TSS region transcription start site region 54722
Tssr54723 6 4528371 to 4528385 14 + TSS region transcription start site region 54723
Tssr54724 6 4530952 to 4530966 14 + TSS region transcription start site region 54724
Tssr59717 6 4531272 to 4531294 22 - TSS region transcription start site region 59717
Tssr54725 6 4533737 to 4533768 31 + TSS region transcription start site region 54725
Tssr54726 6 4537773 to 4537798 25 + TSS region transcription start site region 54726
Tssr54727 6 4537845 to 4537879 34 + TSS region transcription start site region 54727
Tssr54728 6 4537944 to 4537956 12 + TSS region transcription start site region 54728
Tssr1769 6 4537971 to 4537980 9 + TSS region transcription start site region 1769
Tssr54729 6 4537990 to 4538010 20 + TSS region transcription start site region 54729
Tssr54730 6 4538616 to 4538645 29 + TSS region transcription start site region 54730
Tssr1770 6 4538655 to 4538668 13 + TSS region transcription start site region 1770
Tssr54731 6 4538671 to 4538690 19 + TSS region transcription start site region 54731
Tssr54732 6 4538691 to 4538777 86 + TSS region transcription start site region 54732
Tssr54733 6 4539467 to 4539474 7 + TSS region transcription start site region 54733
Tssr54734 6 4539478 to 4539491 13 + TSS region transcription start site region 54734
Tssr54735 6 4539492 to 4539502 10 + TSS region transcription start site region 54735
Tssr54736 6 4539516 to 4539528 12 + TSS region transcription start site region 54736
Tssr54737 6 4539538 to 4539545 7 + TSS region transcription start site region 54737
Tssr54738 6 4539576 to 4539588 12 + TSS region transcription start site region 54738
Tssr54739 6 4539591 to 4539600 9 + TSS region transcription start site region 54739
Tssr54740 6 4539655 to 4539677 22 + TSS region transcription start site region 54740
Tssr54741 6 4540006 to 4540016 10 + TSS region transcription start site region 54741
Tssr54742 6 4540528 to 4540542 14 + TSS region transcription start site region 54742
Tssr54743 6 4540543 to 4540573 30 + TSS region transcription start site region 54743
Tssr54744 6 4540574 to 4540585 11 + TSS region transcription start site region 54744
Tssr54745 6 4540586 to 4540591 5 + TSS region transcription start site region 54745
Tssr54746 6 4540599 to 4540620 21 + TSS region transcription start site region 54746
Tssr54747 6 4540630 to 4540671 41 + TSS region transcription start site region 54747
Tssr54748 6 4540674 to 4540679 5 + TSS region transcription start site region 54748
Tssr59718 6 4540721 to 4540735 14 - TSS region transcription start site region 59718
Tssr59719 6 4540789 to 4540832 43 - TSS region transcription start site region 59719
Tssr54749 6 4540843 to 4540852 9 + TSS region transcription start site region 54749
Tssr54750 6 4540856 to 4540861 5 + TSS region transcription start site region 54750
Tssr54751 6 4540864 to 4540875 11 + TSS region transcription start site region 54751
Tssr54752 6 4540907 to 4540922 15 + TSS region transcription start site region 54752
Tssr54753 6 4540929 to 4540946 17 + TSS region transcription start site region 54753
Tssr54754 6 4541038 to 4541055 17 + TSS region transcription start site region 54754
Tssr54755 6 4541437 to 4541448 11 + TSS region transcription start site region 54755
Gm18289 6 4570879 to 4571728 849 - pseudogene predicted gene, 18289
Gm33959 6 4584345 to 4587092 2747 - lncRNA gene predicted gene, 33959
Gm26696 6 4593804 to 4596651 2847 - lincRNA gene predicted gene, 26696
Tssr54756 6 4600334 to 4600355 21 + TSS region transcription start site region 54756
Cpgi17125 6 4600451 to 4601782 1331 CpG island CpG island 17125
Tssr54757 6 4600658 to 4600676 18 + TSS region transcription start site region 54757
Tssr54758 6 4600732 to 4600770 38 + TSS region transcription start site region 54758
Casd1 6 4600839 to 4643355 42516 + protein coding gene CAS1 domain containing 1
Tssr54759 6 4600898 to 4600956 58 + TSS region transcription start site region 54759
Tssr54760 6 4601124 to 4601164 40 + TSS region transcription start site region 54760
Gm44432 6 4610234 to 4611171 937 + unclassified gene predicted gene, 44432
Tssr54761 6 4623902 to 4623916 14 + TSS region transcription start site region 54761
Tssr54762 6 4623955 to 4623973 18 + TSS region transcription start site region 54762
Gm38761 6 4654215 to 4661370 7155 + lncRNA gene predicted gene, 38761
Sgce 6 4674350 to 4747204 72854 - protein coding gene sarcoglycan, epsilon
Tssr59720 6 4717135 to 4717166 31 - TSS region transcription start site region 59720
Tssr59721 6 4717169 to 4717184 15 - TSS region transcription start site region 59721
Tssr59722 6 4717208 to 4717223 15 - TSS region transcription start site region 59722
Tssr59723 6 4736421 to 4736441 20 - TSS region transcription start site region 59723
Tssr59724 6 4746391 to 4746395 4 - TSS region transcription start site region 59724
Cpgi17126 6 4746791 to 4748791 2000 CpG island CpG island 17126
Tssr59725 6 4747018 to 4747030 12 - TSS region transcription start site region 59725
Tssr59726 6 4747045 to 4747056 11 - TSS region transcription start site region 59726
Tssr59727 6 4747066 to 4747132 66 - TSS region transcription start site region 59727
Tssr59728 6 4747170 to 4747184 14 - TSS region transcription start site region 59728
Tssr1771 6 4747298 to 4747354 56 + TSS region transcription start site region 1771
Peg10 6 4747306 to 4760517 13211 + protein coding gene paternally expressed 10
Tssr54763 6 4747360 to 4747372 12 + TSS region transcription start site region 54763
Tssr1772 6 4747431 to 4747441 10 + TSS region transcription start site region 1772
Tssr1773 6 4747442 to 4747452 10 + TSS region transcription start site region 1773
Tssr54764 6 4747610 to 4747613 3 + TSS region transcription start site region 54764
Tssr54765 6 4752802 to 4752812 10 + TSS region transcription start site region 54765
Tssr54766 6 4754131 to 4754145 14 + TSS region transcription start site region 54766
Tssr54767 6 4754193 to 4754201 8 + TSS region transcription start site region 54767
Tssr54768 6 4754231 to 4754242 11 + TSS region transcription start site region 54768
Tssr59729 6 4754235 to 4754257 22 - TSS region transcription start site region 59729
Tssr54769 6 4754246 to 4754275 29 + TSS region transcription start site region 54769
Tssr54770 6 4754429 to 4754440 11 + TSS region transcription start site region 54770
Tssr54771 6 4754570 to 4754581 11 + TSS region transcription start site region 54771
Cpgi17127 6 4754723 to 4755432 709 CpG island CpG island 17127
Tssr54772 6 4755119 to 4755137 18 + TSS region transcription start site region 54772
Tssr54773 6 4755356 to 4755357 1 + TSS region transcription start site region 54773
Tssr54774 6 4755368 to 4755384 16 + TSS region transcription start site region 54774
Tssr54775 6 4755397 to 4755408 11 + TSS region transcription start site region 54775
Tssr54776 6 4755442 to 4755462 20 + TSS region transcription start site region 54776
Tssr54777 6 4755566 to 4755573 7 + TSS region transcription start site region 54777
Tssr54778 6 4755579 to 4755590 11 + TSS region transcription start site region 54778
Tssr54779 6 4755598 to 4755607 9 + TSS region transcription start site region 54779
Tssr54780 6 4755723 to 4755751 28 + TSS region transcription start site region 54780
Tssr54781 6 4755792 to 4755809 17 + TSS region transcription start site region 54781
Tssr54782 6 4755947 to 4755948 1 + TSS region transcription start site region 54782
Tssr54783 6 4755983 to 4756002 19 + TSS region transcription start site region 54783
Tssr54784 6 4756051 to 4756066 15 + TSS region transcription start site region 54784
Tssr54785 6 4756386 to 4756395 9 + TSS region transcription start site region 54785
Tssr54786 6 4756411 to 4756421 10 + TSS region transcription start site region 54786
Tssr54787 6 4756465 to 4756475 10 + TSS region transcription start site region 54787
Tssr54788 6 4756526 to 4756550 24 + TSS region transcription start site region 54788
Tssr54789 6 4756592 to 4756605 13 + TSS region transcription start site region 54789
Tssr59730 6 4756602 to 4756612 10 - TSS region transcription start site region 59730
Tssr54790 6 4756618 to 4756638 20 + TSS region transcription start site region 54790
Tssr54791 6 4756672 to 4756693 21 + TSS region transcription start site region 54791
Tssr54792 6 4756711 to 4756725 14 + TSS region transcription start site region 54792
Tssr54793 6 4756731 to 4756742 11 + TSS region transcription start site region 54793
Tssr54794 6 4756797 to 4756816 19 + TSS region transcription start site region 54794
Tssr54795 6 4756824 to 4756844 20 + TSS region transcription start site region 54795
Tssr54796 6 4756860 to 4756872 12 + TSS region transcription start site region 54796
Tssr54797 6 4756948 to 4756960 12 + TSS region transcription start site region 54797
Tssr54798 6 4757019 to 4757034 15 + TSS region transcription start site region 54798
Tssr59731 6 4757061 to 4757084 23 - TSS region transcription start site region 59731
Tssr54799 6 4757079 to 4757093 14 + TSS region transcription start site region 54799
Tssr54800 6 4757385 to 4757402 17 + TSS region transcription start site region 54800
Tssr54801 6 4758298 to 4758301 3 + TSS region transcription start site region 54801
Tssr54802 6 4758347 to 4758350 3 + TSS region transcription start site region 54802
Tssr54803 6 4758415 to 4758426 11 + TSS region transcription start site region 54803
Tssr54804 6 4758433 to 4758438 5 + TSS region transcription start site region 54804
Tssr54805 6 4758451 to 4758464 13 + TSS region transcription start site region 54805
Tssr54806 6 4758482 to 4758497 15 + TSS region transcription start site region 54806
Tssr54807 6 4758499 to 4758510 11 + TSS region transcription start site region 54807
Tssr54808 6 4758548 to 4758581 33 + TSS region transcription start site region 54808
Tssr54809 6 4758591 to 4758598 7 + TSS region transcription start site region 54809
Tssr54810 6 4758669 to 4758682 13 + TSS region transcription start site region 54810
Tssr54811 6 4758729 to 4758740 11 + TSS region transcription start site region 54811
Tssr54812 6 4758899 to 4758906 7 + TSS region transcription start site region 54812
Tssr54813 6 4758918 to 4758936 18 + TSS region transcription start site region 54813
Tssr54814 6 4759471 to 4759474 3 + TSS region transcription start site region 54814
Tssr54815 6 4759492 to 4759504 12 + TSS region transcription start site region 54815
Tssr54816 6 4759510 to 4759524 14 + TSS region transcription start site region 54816
Tssr54817 6 4759526 to 4759537 11 + TSS region transcription start site region 54817
Tssr54818 6 4759554 to 4759563 9 + TSS region transcription start site region 54818
Tssr54819 6 4759597 to 4759606 9 + TSS region transcription start site region 54819
Tssr54820 6 4759618 to 4759629 11 + TSS region transcription start site region 54820
Tssr54821 6 4759651 to 4759663 12 + TSS region transcription start site region 54821
Tssr54822 6 4759674 to 4759695 21 + TSS region transcription start site region 54822
Tssr54823 6 4759714 to 4759719 5 + TSS region transcription start site region 54823
Tssr54824 6 4759769 to 4759781 12 + TSS region transcription start site region 54824
Tssr54825 6 4759788 to 4759799 11 + TSS region transcription start site region 54825
Tssr54826 6 4759807 to 4759819 12 + TSS region transcription start site region 54826
Tssr1774 6 4759828 to 4759835 7 + TSS region transcription start site region 1774
Tssr54827 6 4759838 to 4759848 10 + TSS region transcription start site region 54827
Tssr54828 6 4759875 to 4759886 11 + TSS region transcription start site region 54828
Tssr54829 6 4759888 to 4759897 9 + TSS region transcription start site region 54829
Tssr54830 6 4759903 to 4759934 31 + TSS region transcription start site region 54830
Tssr54831 6 4759966 to 4759977 11 + TSS region transcription start site region 54831
Tssr54832 6 4759978 to 4759987 9 + TSS region transcription start site region 54832
Tssr54833 6 4760024 to 4760050 26 + TSS region transcription start site region 54833
Tssr54834 6 4760055 to 4760099 44 + TSS region transcription start site region 54834
Tssr54835 6 4760101 to 4760110 9 + TSS region transcription start site region 54835
Tssr54836 6 4760113 to 4760124 11 + TSS region transcription start site region 54836
Tssr54837 6 4760228 to 4760238 10 + TSS region transcription start site region 54837
Tssr54838 6 4760241 to 4760261 20 + TSS region transcription start site region 54838
Tssr54839 6 4760280 to 4760287 7 + TSS region transcription start site region 54839
Gm44121 6 4770900 to 4772905 2005 + unclassified gene predicted gene, 44121
Gm20714 6 4807055 to 4816329 9274 - lincRNA gene predicted gene 20714
Tssr59732 6 4816305 to 4816320 15 - TSS region transcription start site region 59732
Gm26828 6 4832227 to 4832398 171 + pseudogene predicted gene, 26828
Gmfg-ps 6 4893352 to 4893778 426 - pseudogene glia maturation factor, gamma, pseudogene
Cpgi17128 6 4902735 to 4904043 1308 CpG island CpG island 17128
Tssr54840 6 4902913 to 4903014 101 + TSS region transcription start site region 54840
Ppp1r9a 6 4902917 to 5165661 262744 + protein coding gene protein phosphatase 1, regulatory subunit 9A
Tssr54841 6 4903057 to 4903068 11 + TSS region transcription start site region 54841
Tssr54842 6 4903250 to 4903272 22 + TSS region transcription start site region 54842
Tssr54843 6 4903298 to 4903346 48 + TSS region transcription start site region 54843
Tssr54844 6 4903350 to 4903367 17 + TSS region transcription start site region 54844
Tssr59733 6 4903917 to 4903924 7 - TSS region transcription start site region 59733
2210017G18Rik 6 4919625 to 4920829 1204 unclassified non-coding RNA gene RIKEN cDNA 2210017G18 gene
Tssr54845 6 4923495 to 4923512 17 + TSS region transcription start site region 54845
Gm26814 6 4942147 to 4946295 4148 + lincRNA gene predicted gene, 26814
Gm26736 6 4946568 to 4947803 1235 + lincRNA gene predicted gene, 26736
Gm26556 6 4958983 to 4959302 319 + lincRNA gene predicted gene, 26556