Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:44201318-52171389

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1157 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Aaj2 6 4503823 to 48726677 44222854 QTL anxiety in A/J 2
Axtq2 6 4503823 to 48726677 44222854 QTL anxiety QTL 2
Bmiq2 6 4503823 to 45314181 40810358 QTL body mass index QTL 2
Bmiq3 6 4503823 to 48726677 44222854 QTL body mass index QTL 3
D6Mit207 6 44465871 to 44466016 145 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 207
Cia6c 6 44465871 to 71119467 26653596 QTL collagen induced arthritis QTL 6c
Gm44211 6 44667291 to 44667435 144 - pseudogene predicted gene, 44211
Tssr56058 6 44792927 to 44792929 2 + TSS region transcription start site region 56058
Gm44212 6 44821571 to 44822467 896 + pseudogene predicted gene, 44212
Gm44213 6 44965923 to 44966625 702 + pseudogene predicted gene, 44213
Tssr56059 6 45059582 to 45059638 56 + TSS region transcription start site region 56059
Cpgi17345 6 45059585 to 45059896 311 CpG island CpG island 17345
Tssr56060 6 45060036 to 45060067 31 + TSS region transcription start site region 56060
Cntnap2 6 45060061 to 47301393 2241332 + protein coding gene contactin associated protein-like 2
Tssr56061 6 45060100 to 45060109 9 + TSS region transcription start site region 56061
Tssr56062 6 45060113 to 45060124 11 + TSS region transcription start site region 56062
Tssr56063 6 45060183 to 45060247 64 + TSS region transcription start site region 56063
B230112I24Rik 6 45073566 to 45074794 1228 + unclassified gene RIKEN cDNA B230112I24 gene
Gm43879 6 45080746 to 45084505 3759 + unclassified gene predicted gene, 43879
Tssr56064 6 45105097 to 45105100 3 + TSS region transcription start site region 56064
Gm43872 6 45135270 to 45137482 2212 + unclassified gene predicted gene, 43872
Tssr56065 6 45158925 to 45158930 5 + TSS region transcription start site region 56065
Gm43885 6 45194876 to 45197417 2541 + unclassified gene predicted gene, 43885
Gm43889 6 45203810 to 45207490 3680 + unclassified gene predicted gene, 43889
9630039A02Rik 6 45229791 to 45233772 3981 unclassified gene RIKEN cDNA 9630039A02 gene
Gm43874 6 45245637 to 45248434 2797 + unclassified gene predicted gene, 43874
Tssr56066 6 45267291 to 45267295 4 + TSS region transcription start site region 56066
Tssr56067 6 45285165 to 45285183 18 + TSS region transcription start site region 56067
Gm43869 6 45301103 to 45302507 1404 + unclassified gene predicted gene, 43869
6330419E04Rik 6 45306124 to 45307386 1262 + unclassified gene RIKEN cDNA 6330419E04 gene
D6Mit223 6 45314059 to 45314181 122 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 223
Obrq3 6 45314059 to 45314181 122 QTL obesity resistance QTL 3
Pgia19 6 45314059 to 87426034 42111975 QTL proteoglycan induced arthritis 19
D6Dcr6 6 45314060 to 45314181 121 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 6
Tssr56068 6 45317829 to 45317833 4 + TSS region transcription start site region 56068
Gm43882 6 45326402 to 45328665 2263 + unclassified gene predicted gene, 43882
Gm43884 6 45329238 to 45329796 558 + unclassified gene predicted gene, 43884
Gm43880 6 45413235 to 45415396 2161 + unclassified gene predicted gene, 43880
Gm43876 6 45529083 to 45532311 3228 + unclassified gene predicted gene, 43876
Tssr56069 6 45545880 to 45545886 6 + TSS region transcription start site region 56069
Tssr1828 6 45808887 to 45808889 2 - TSS region transcription start site region 1828
Gm18483 6 45894474 to 45895029 555 - pseudogene predicted gene, 18483
Gm43886 6 45901938 to 45904323 2385 + unclassified gene predicted gene, 43886
Gm22839 6 46037776 to 46038079 303 + unclassified non-coding RNA gene predicted gene, 22839
Tssr56070 6 46041061 to 46041064 3 + TSS region transcription start site region 56070
Gm43871 6 46041951 to 46043905 1954 + unclassified gene predicted gene, 43871
Gm43873 6 46045143 to 46049080 3937 + unclassified gene predicted gene, 43873
Gm43877 6 46049158 to 46051395 2237 + unclassified gene predicted gene, 43877
Gm43888 6 46072409 to 46074995 2586 + unclassified gene predicted gene, 43888
Gm43887 6 46076179 to 46079364 3185 + unclassified gene predicted gene, 43887
Gm43870 6 46134102 to 46138470 4368 + unclassified gene predicted gene, 43870
Tssr60686 6 46147891 to 46147902 11 - TSS region transcription start site region 60686
D6Mit349 6 46184812 to 46184935 123 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 349
Tssr1829 6 46213952 to 46213955 3 + TSS region transcription start site region 1829
Gm43881 6 46413756 to 46416285 2529 + unclassified gene predicted gene, 43881
Gm25161 6 46481709 to 46481840 131 - snoRNA gene predicted gene, 25161
Gm43875 6 46486643 to 46489117 2474 + unclassified gene predicted gene, 43875
Rbpj-ps3 6 46529354 to 46530794 1440 - pseudogene recombination signal binding protein for immunoglobulin kappa J region, pseudogene 3
Tssr60687 6 46530186 to 46530203 17 - TSS region transcription start site region 60687
Tssr56071 6 46563303 to 46563308 5 + TSS region transcription start site region 56071
Gm18484 6 46637292 to 46638282 990 - pseudogene predicted gene, 18484
Gm35931 6 46778409 to 46778856 447 - pseudogene predicted gene, 35931
Gm43883 6 46785953 to 46789702 3749 + unclassified gene predicted gene, 43883
D6Mit273 6 46935985 to 46936108 123 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 273
Gm38801 6 46952382 to 46958234 5852 - lncRNA gene predicted gene, 38801
Gm35875 6 47006550 to 47040804 34254 - lncRNA gene predicted gene, 35875
Tssr60688 6 47044578 to 47044585 7 - TSS region transcription start site region 60688
Tssr56072 6 47044594 to 47044619 25 + TSS region transcription start site region 56072
Cpgi17346 6 47044710 to 47045070 360 CpG island CpG island 17346
Tssr56073 6 47045022 to 47045027 5 + TSS region transcription start site region 56073
Tssr56074 6 47045045 to 47045061 16 + TSS region transcription start site region 56074
Gm6352 6 47045156 to 47046286 1130 + pseudogene predicted gene 6352
D6Mit224 6 47068326 to 47068474 148 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 224
D6Mit75 6 47112360 to 47112509 149 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 75
Gm35798 6 47120009 to 47124958 4949 - lncRNA gene predicted gene, 35798
4930432J01Rik 6 47139211 to 47164232 25021 unclassified non-coding RNA gene RIKEN cDNA 4930432J01 gene
D6Mit1008a 6 47144202 to 47144315 113 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 1008a
D6Mit1008b 6 47163130 to 47163243 113 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 1008b
Tssr60689 6 47190433 to 47190442 9 - TSS region transcription start site region 60689
Gm35280 6 47191384 to 47259162 67778 - lncRNA gene predicted gene, 35280
Gm35565 6 47227498 to 47230585 3087 + lncRNA gene predicted gene, 35565
Tssr56075 6 47244359 to 47244417 58 + TSS region transcription start site region 56075
Tssr56076 6 47244418 to 47244437 19 + TSS region transcription start site region 56076
Tssr56077 6 47244438 to 47244449 11 + TSS region transcription start site region 56077
Tssr60690 6 47302666 to 47302667 1 - TSS region transcription start site region 60690
Gm18584 6 47432123 to 47432820 697 - pseudogene predicted gene, 18584
Cpgi17347 6 47453476 to 47455224 1748 CpG island CpG island 17347
Cul1 6 47453737 to 47526139 72402 + protein coding gene cullin 1
A930035D04Rik 6 47453776 to 47454320 544 - unclassified gene RIKEN cDNA A930035D04 gene
Tssr56078 6 47453831 to 47453868 37 + TSS region transcription start site region 56078
Tssr56079 6 47453874 to 47453907 33 + TSS region transcription start site region 56079
Tssr56080 6 47453913 to 47453929 16 + TSS region transcription start site region 56080
Tssr56081 6 47453954 to 47453992 38 + TSS region transcription start site region 56081
Tssr56082 6 47454006 to 47454017 11 + TSS region transcription start site region 56082
Tssr56083 6 47454340 to 47454423 83 + TSS region transcription start site region 56083
Tssr56084 6 47454433 to 47454445 12 + TSS region transcription start site region 56084
Tssr60691 6 47454609 to 47454627 18 - TSS region transcription start site region 60691
Tssr60692 6 47454637 to 47454648 11 - TSS region transcription start site region 60692
Tssr56085 6 47454682 to 47454701 19 + TSS region transcription start site region 56085
Tssr56086 6 47454702 to 47454719 17 + TSS region transcription start site region 56086
Tssr60693 6 47454842 to 47454866 24 - TSS region transcription start site region 60693
Tssr56087 6 47454985 to 47454994 9 + TSS region transcription start site region 56087
Tssr56088 6 47454999 to 47455008 9 + TSS region transcription start site region 56088
Tssr60694 6 47455051 to 47455069 18 - TSS region transcription start site region 60694
9430013L14Rik 6 47463339 to 47464553 1214 unclassified gene RIKEN cDNA 9430013L14 gene
Tssr56089 6 47468129 to 47468132 3 + TSS region transcription start site region 56089
Tssr56090 6 47468350 to 47468355 5 + TSS region transcription start site region 56090
D6Dcr7 6 47469253 to 47469361 108 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 7
D6Mit352 6 47469256 to 47469364 108 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 352
Tssr56091 6 47480787 to 47480794 7 + TSS region transcription start site region 56091
Tssr56092 6 47510174 to 47510175 1 + TSS region transcription start site region 56092
Tssr56093 6 47522332 to 47522336 4 + TSS region transcription start site region 56093
Ezh2 6 47530274 to 47595340 65066 - protein coding gene enhancer of zeste 2 polycomb repressive complex 2 subunit
Tssr56094 6 47545696 to 47545716 20 + TSS region transcription start site region 56094
Gm26625 6 47546666 to 47551704 5038 + lincRNA gene predicted gene, 26625
Tssr60695 6 47550970 to 47550981 11 - TSS region transcription start site region 60695
Tssr60696 6 47556098 to 47556114 16 - TSS region transcription start site region 60696
Tssr60697 6 47563265 to 47563280 15 - TSS region transcription start site region 60697
D6Mit351 6 47574728 to 47574837 109 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 351
D430047D06Rik 6 47580282 to 47583708 3426 unclassified gene RIKEN cDNA D430047D06 gene
Tssr1830 6 47584175 to 47584182 7 - TSS region transcription start site region 1830
Gm44282 6 47585216 to 47585405 189 + pseudogene predicted gene, 44282
Cpgi17348 6 47594102 to 47595767 1665 CpG island CpG island 17348
Tssr60698 6 47594777 to 47594788 11 - TSS region transcription start site region 60698
Tssr60699 6 47594967 to 47595047 80 - TSS region transcription start site region 60699
Tssr60700 6 47595053 to 47595065 12 - TSS region transcription start site region 60700
Tssr56095 6 47595161 to 47595217 56 + TSS region transcription start site region 56095
F830010H11Rik 6 47595189 to 47597526 2337 unclassified gene RIKEN cDNA F830010H11 gene
Gm44141 6 47635297 to 47636879 1582 + unclassified gene predicted gene, 44141
Tssr56096 6 47636577 to 47636607 30 + TSS region transcription start site region 56096
Tssr60701 6 47636870 to 47636883 13 - TSS region transcription start site region 60701
Tssr60702 6 47636891 to 47636914 23 - TSS region transcription start site region 60702
Gm25283 6 47637143 to 47637219 76 + unclassified non-coding RNA gene predicted gene, 25283
Gm40371 6 47644607 to 47651846 7239 - lncRNA gene predicted gene, 40371
Cpgi17349 6 47650694 to 47651619 925 CpG island CpG island 17349
Gm40369 6 47652126 to 47656124 3998 + protein coding gene predicted gene, 40369
Rn4.5s 6 47654921 to 47655094 173 - rRNA gene 4.5S RNA
Gm40368 6 47656370 to 47660430 4060 + protein coding gene predicted gene, 40368
Gm40367 6 47660679 to 47664791 4112 + protein coding gene predicted gene, 40367
Gm36504 6 47665038 to 47669121 4083 + protein coding gene predicted gene, 36504
Gm40365 6 47669368 to 47673447 4079 + protein coding gene predicted gene, 40365
Gm36327 6 47673689 to 47677773 4084 + protein coding gene predicted gene, 36327
Gm40364 6 47678022 to 47682091 4069 + protein coding gene predicted gene, 40364
Gm40363 6 47682345 to 47738326 55981 + protein coding gene predicted gene, 40363
Cpgi17350 6 47740297 to 47740465 168 CpG island CpG island 17350
Gm36673 6 47762210 to 47773095 10885 + lncRNA gene predicted gene, 36673
Cpgi17351 6 47778200 to 47778748 548 CpG island CpG island 17351
Tssr60703 6 47778336 to 47778339 3 - TSS region transcription start site region 60703
Tssr60704 6 47780681 to 47780688 7 - TSS region transcription start site region 60704
Tssr56097 6 47781618 to 47781628 10 + TSS region transcription start site region 56097
Rny3 6 47781624 to 47781724 100 + scRNA gene RNA, Y3 small cytoplasmic (associated with Ro protein)
Tssr56098 6 47781639 to 47781678 39 + TSS region transcription start site region 56098
D6Mit315 6 47785022 to 47785116 94 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 315
Rpl31-ps7 6 47785996 to 47786374 378 - pseudogene ribosomal protein L31, pseudogene 7
Rny1 6 47788070 to 47788180 110 - scRNA gene RNA, Y1 small cytoplasmic, Ro-associated
Tssr60705 6 47788108 to 47788140 32 - TSS region transcription start site region 60705
Tssr60706 6 47788178 to 47788188 10 - TSS region transcription start site region 60706
Pdia4 6 47796141 to 47813430 17289 - protein coding gene protein disulfide isomerase associated 4
Tssr60707 6 47796243 to 47796247 4 - TSS region transcription start site region 60707
Tssr56099 6 47796824 to 47796870 46 + TSS region transcription start site region 56099
Tssr60708 6 47798430 to 47798444 14 - TSS region transcription start site region 60708
Tssr60709 6 47798548 to 47798573 25 - TSS region transcription start site region 60709
Tssr60710 6 47799222 to 47799236 14 - TSS region transcription start site region 60710
Tssr60711 6 47799239 to 47799269 30 - TSS region transcription start site region 60711
Tssr60712 6 47800993 to 47801015 22 - TSS region transcription start site region 60712
Mir704 6 47803576 to 47803652 76 - miRNA gene microRNA 704
Tssr60713 6 47803835 to 47803862 27 - TSS region transcription start site region 60713
Tssr60714 6 47807214 to 47807225 11 - TSS region transcription start site region 60714
Tssr60715 6 47807481 to 47807493 12 - TSS region transcription start site region 60715
Cpgi17352 6 47812987 to 47813782 795 CpG island CpG island 17352
Tssr60716 6 47813338 to 47813369 31 - TSS region transcription start site region 60716
Tssr60717 6 47813377 to 47813409 32 - TSS region transcription start site region 60717
Tssr60718 6 47813514 to 47813528 14 - TSS region transcription start site region 60718
Tssr56100 6 47813758 to 47813787 29 + TSS region transcription start site region 56100
Rpl35a-ps7 6 47815300 to 47815632 332 - pseudogene ribosomal protein L35A, pseudogene 7
Zfp786 6 47819266 to 47830867 11601 - protein coding gene zinc finger protein 786
Cpgi17353 6 47830086 to 47831027 941 CpG island CpG island 17353
Tssr60719 6 47830509 to 47830584 75 - TSS region transcription start site region 60719
Cpgi17354 6 47835444 to 47836525 1081 CpG island CpG island 17354
Tssr56101 6 47835650 to 47835725 75 + TSS region transcription start site region 56101
Zfp398 6 47835661 to 47873537 37876 + protein coding gene zinc finger protein 398
Tssr56102 6 47835728 to 47835739 11 + TSS region transcription start site region 56102
Tssr56103 6 47835749 to 47835777 28 + TSS region transcription start site region 56103
Tssr56104 6 47835786 to 47835797 11 + TSS region transcription start site region 56104
Tssr56105 6 47835798 to 47835824 26 + TSS region transcription start site region 56105
Gm44041 6 47847743 to 47848138 395 + pseudogene predicted gene, 44041
Tssr56106 6 47869982 to 47869985 3 + TSS region transcription start site region 56106
Zfp282 6 47877209 to 47908485 31276 + protein coding gene zinc finger protein 282
Cpgi17355 6 47877320 to 47878437 1117 CpG island CpG island 17355
Tssr56107 6 47877548 to 47877569 21 + TSS region transcription start site region 56107
Tssr56108 6 47877571 to 47877594 23 + TSS region transcription start site region 56108
Tssr56109 6 47877620 to 47877640 20 + TSS region transcription start site region 56109
Tssr56110 6 47877643 to 47877708 65 + TSS region transcription start site region 56110
Cpgi17356 6 47904501 to 47905558 1057 CpG island CpG island 17356
Cpgi17357 6 47920285 to 47921228 943 CpG island CpG island 17357
Zfp212 6 47920568 to 47932639 12071 + protein coding gene Zinc finger protein 212
Tssr56111 6 47920584 to 47920636 52 + TSS region transcription start site region 56111
Cpgi17358 6 47942690 to 47943725 1035 CpG island CpG island 17358
Tssr56112 6 47943141 to 47943215 74 + TSS region transcription start site region 56112
Zfp783 6 47943175 to 47954549 11374 + pseudogene zinc finger protein 783